Wall clock time and date at job start Fri Apr 10 2020 18:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47001 * 2 1 4 4 N 1.46506 * 109.47101 * 120.00100 * 2 1 3 5 5 C 1.46760 * 124.34691 * 119.99712 * 4 2 1 6 6 C 1.54480 * 105.47215 * 196.99532 * 5 4 2 7 7 H 1.08993 * 110.97085 * 92.70398 * 6 5 4 8 8 C 1.50702 * 110.97118 * 216.43277 * 6 5 4 9 9 O 1.21277 * 119.99911 * 359.97438 * 8 6 5 10 10 N 1.34773 * 120.00204 * 179.97438 * 8 6 5 11 11 C 1.47433 * 125.64754 * 0.02574 * 10 8 6 12 12 C 1.54907 * 104.82831 * 204.09075 * 11 10 8 13 13 C 1.55154 * 101.58555 * 322.98853 * 12 11 10 14 14 H 1.09005 * 110.71895 * 276.96468 * 13 12 11 15 15 N 1.46493 * 110.72297 * 153.86898 * 13 12 11 16 16 C 1.46501 * 119.99912 * 301.45810 * 15 13 12 17 17 C 1.36932 * 120.00561 * 121.45118 * 15 13 12 18 18 H 1.08006 * 119.99537 * 21.92599 * 17 15 13 19 19 C 1.38809 * 120.00475 * 201.92520 * 17 15 13 20 20 N 1.31615 * 120.00110 * 11.03061 * 19 17 15 21 21 Si 1.86802 * 120.00008 * 191.02678 * 19 17 15 22 22 H 1.48497 * 109.47205 * 89.99977 * 21 19 17 23 23 H 1.48507 * 109.47231 * 210.00372 * 21 19 17 24 24 H 1.48497 * 109.47446 * 330.00003 * 21 19 17 25 25 C 1.47023 * 125.65150 * 179.71326 * 10 8 6 26 26 C 1.54788 * 101.69146 * 334.39445 * 6 5 4 27 27 C 1.34417 * 124.34709 * 299.97537 * 4 2 1 28 28 O 1.21280 * 124.94473 * 359.57674 * 27 4 2 29 29 H 1.08999 * 109.47024 * 299.99970 * 1 2 3 30 30 H 1.09002 * 109.46982 * 60.00021 * 1 2 3 31 31 H 1.09000 * 109.47143 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47024 * 240.00030 * 2 1 3 33 33 H 1.08999 * 109.47207 * 60.00142 * 3 2 1 34 34 H 1.09010 * 109.46885 * 180.02562 * 3 2 1 35 35 H 1.08993 * 109.47330 * 299.99947 * 3 2 1 36 36 H 1.08999 * 110.25296 * 315.99562 * 5 4 2 37 37 H 1.09002 * 110.24826 * 77.91283 * 5 4 2 38 38 H 1.09001 * 110.36340 * 322.92650 * 11 10 8 39 39 H 1.08998 * 110.36431 * 85.24883 * 11 10 8 40 40 H 1.08996 * 111.00404 * 81.07144 * 12 11 10 41 41 H 1.09006 * 110.99774 * 204.87525 * 12 11 10 42 42 H 1.08995 * 109.47405 * 95.07145 * 16 15 13 43 43 H 1.09004 * 109.47329 * 215.07354 * 16 15 13 44 44 H 1.09005 * 109.47174 * 335.06965 * 16 15 13 45 45 H 0.97002 * 119.99852 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.88184 * 298.39774 * 25 10 8 47 47 H 1.09002 * 109.87702 * 59.56111 * 25 10 8 48 48 H 1.09002 * 110.61609 * 266.39814 * 26 6 5 49 49 H 1.09001 * 110.42751 * 143.71336 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.8655 -1.8888 1.1727 6 6 2.7613 -2.4951 2.5897 7 1 1.9680 -3.2411 2.6374 8 6 4.0790 -3.0847 3.0224 9 8 5.0369 -3.0384 2.2801 10 7 4.1928 -3.6634 4.2342 11 6 3.1141 -3.7887 5.2314 12 6 3.8445 -3.9237 6.5907 13 6 5.0764 -4.7817 6.1987 14 1 4.8191 -5.8408 6.1821 15 7 6.1923 -4.5357 7.1154 16 6 6.7303 -3.1816 7.2676 17 6 6.7325 -5.5713 7.8301 18 1 6.6061 -6.5877 7.4873 19 6 7.4425 -5.3149 8.9950 20 7 7.4158 -4.1131 9.5309 21 14 8.4358 -6.6756 9.8020 22 1 9.8162 -6.6720 9.2548 23 1 8.4842 -6.4498 11.2690 24 1 7.7965 -7.9868 9.5240 25 6 5.4116 -4.2802 4.7782 26 6 2.4092 -1.2496 3.4387 27 6 1.7484 -0.3081 2.4562 28 8 1.0771 0.6549 2.7610 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8899 36 1 2.4964 -2.5974 0.4312 37 1 3.8978 -1.6167 0.9525 38 1 2.4862 -2.8977 5.2249 39 1 2.5152 -4.6774 5.0326 40 1 4.1517 -2.9482 6.9677 41 1 3.2216 -4.4431 7.3190 42 1 6.2615 -2.6985 8.1249 43 1 7.8077 -3.2342 7.4246 44 1 6.5222 -2.6045 6.3666 45 1 7.9117 -3.9341 10.3451 46 1 5.7158 -5.1171 4.1496 47 1 6.2110 -3.5408 4.8271 48 1 3.3117 -0.7987 3.8512 49 1 1.7161 -1.5166 4.2365 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971632521.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:05 Heat of formation + Delta-G solvation = -55.591232 kcal Electronic energy + Delta-G solvation = -28399.954118 eV Core-core repulsion = 24555.149003 eV Total energy + Delta-G solvation = -3844.805116 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.03547 -40.73107 -38.96729 -37.40079 -36.55545 -35.91246 -33.47033 -31.68013 -31.03707 -29.26006 -28.75524 -28.11702 -28.07577 -25.73913 -24.11468 -23.50898 -23.14941 -20.85442 -20.12277 -19.96954 -18.93361 -18.54468 -17.67491 -17.53039 -16.95009 -16.67519 -16.43554 -15.75718 -15.65272 -15.14881 -15.11203 -15.00340 -14.74058 -14.59911 -14.40318 -14.27382 -13.94591 -13.78803 -13.62398 -13.19718 -13.03795 -12.98128 -12.93302 -12.81482 -12.57312 -12.51172 -12.38789 -12.32302 -12.22801 -12.19331 -12.07520 -12.03157 -11.80559 -11.45585 -11.06702 -10.65632 -10.60041 -9.74190 -9.63374 -8.81561 -7.82629 -5.31037 1.47368 1.48306 1.50144 1.54741 1.58029 1.77762 2.07369 2.51885 3.11354 3.30069 3.32130 3.56491 3.60313 3.80646 3.86972 3.97627 4.01846 4.10459 4.17723 4.29378 4.31859 4.35958 4.49211 4.50808 4.53449 4.64172 4.72055 4.72566 4.78969 4.83285 4.86028 4.90842 4.92879 4.96942 5.04523 5.19124 5.22273 5.28556 5.31030 5.37377 5.43107 5.64710 5.65663 5.71959 6.09220 6.31754 6.54746 7.06515 7.12475 7.14648 7.85089 8.29039 9.20899 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.032081 B = 0.002467 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.580401 B =11344.877342 C =11531.729982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.144 3.856 3 C -0.166 4.166 4 N -0.611 5.611 5 C 0.119 3.881 6 C -0.103 4.103 7 H 0.153 0.847 8 C 0.536 3.464 9 O -0.580 6.580 10 N -0.607 5.607 11 C 0.103 3.897 12 C -0.145 4.145 13 C 0.165 3.835 14 H 0.085 0.915 15 N -0.604 5.604 16 C 0.183 3.817 17 C -0.262 4.262 18 H 0.077 0.923 19 C -0.053 4.053 20 N -0.939 5.939 21 Si 0.969 3.031 22 H -0.291 1.291 23 H -0.297 1.297 24 H -0.265 1.265 25 C 0.099 3.901 26 C -0.143 4.143 27 C 0.517 3.483 28 O -0.565 6.565 29 H 0.043 0.957 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.115 0.885 33 H 0.043 0.957 34 H 0.051 0.949 35 H 0.088 0.912 36 H 0.112 0.888 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.055 0.945 41 H 0.087 0.913 42 H 0.008 0.992 43 H 0.013 0.987 44 H 0.020 0.980 45 H 0.247 0.753 46 H 0.060 0.940 47 H 0.045 0.955 48 H 0.097 0.903 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.053 3.502 -19.005 25.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.043 3.957 3 C -0.224 4.224 4 N -0.345 5.345 5 C -0.004 4.004 6 C -0.124 4.124 7 H 0.170 0.830 8 C 0.325 3.675 9 O -0.461 6.461 10 N -0.340 5.340 11 C -0.019 4.019 12 C -0.185 4.185 13 C 0.056 3.944 14 H 0.103 0.897 15 N -0.326 5.326 16 C 0.038 3.962 17 C -0.392 4.392 18 H 0.095 0.905 19 C -0.248 4.248 20 N -0.585 5.585 21 Si 0.798 3.202 22 H -0.218 1.218 23 H -0.223 1.223 24 H -0.189 1.189 25 C -0.027 4.027 26 C -0.183 4.183 27 C 0.305 3.695 28 O -0.444 6.444 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.133 0.867 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.107 0.893 36 H 0.131 0.869 37 H 0.092 0.908 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.074 0.926 41 H 0.106 0.894 42 H 0.027 0.973 43 H 0.031 0.969 44 H 0.039 0.961 45 H 0.056 0.944 46 H 0.078 0.922 47 H 0.063 0.937 48 H 0.115 0.885 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -15.834 4.138 -19.239 25.259 hybrid contribution 1.275 -0.324 1.055 1.686 sum -14.559 3.814 -18.185 23.605 Atomic orbital electron populations 1.22122 0.94133 1.02727 1.02847 1.21202 0.94849 0.92959 0.86703 1.22160 1.01019 0.96246 1.02934 1.48607 1.50368 1.29298 1.06192 1.22043 0.95681 0.86375 0.96325 1.22190 0.95848 0.98432 0.95980 0.82979 1.20279 0.90196 0.77301 0.79742 1.90701 1.41675 1.59977 1.53716 1.48492 1.13341 1.56391 1.15737 1.22648 0.89328 1.04133 0.85776 1.23230 0.97606 1.00774 0.96896 1.21497 0.87353 0.98502 0.87008 0.89716 1.44044 1.35796 1.05369 1.47359 1.20436 0.96159 0.84837 0.94798 1.19594 1.28810 0.88608 1.02205 0.90505 1.25769 1.02812 0.98817 0.97398 1.70234 1.45277 1.21883 1.21151 0.85233 0.78645 0.79434 0.76913 1.21786 1.22349 1.18931 1.22382 0.87407 0.96848 0.96027 1.22429 1.03215 0.94015 0.98619 1.20976 0.79293 0.84658 0.84565 1.90687 1.41470 1.30140 1.82113 0.93759 0.89599 0.91635 0.86680 0.93761 0.92961 0.89345 0.86947 0.90780 0.88144 0.88093 0.92622 0.89415 0.97332 0.96851 0.96118 0.94356 0.92199 0.93652 0.88501 0.85027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.20 71.98 0.66 -1.49 16 2 C 0.14 2.04 3.47 44.99 0.16 2.20 16 3 C -0.17 -2.68 9.20 71.98 0.66 -2.02 16 4 N -0.61 -10.58 2.83 -794.04 -2.25 -12.83 16 5 C 0.12 1.81 6.66 86.83 0.58 2.39 16 6 C -0.10 -1.61 2.90 -10.43 -0.03 -1.64 16 7 H 0.15 1.36 8.14 -2.39 -0.02 1.34 16 8 C 0.54 13.29 7.10 87.66 0.62 13.91 16 9 O -0.58 -19.20 15.83 -3.02 -0.05 -19.25 16 10 N -0.61 -15.59 3.33 -811.76 -2.70 -18.29 16 11 C 0.10 2.01 6.64 86.85 0.58 2.58 16 12 C -0.14 -4.19 6.65 31.98 0.21 -3.98 16 13 C 0.16 5.93 3.43 46.18 0.16 6.09 16 14 H 0.08 2.94 7.92 -2.38 -0.02 2.92 16 15 N -0.60 -28.71 2.94 -696.14 -2.05 -30.76 16 16 C 0.18 8.95 7.66 127.77 0.98 9.93 16 17 C -0.26 -13.75 9.63 84.03 0.81 -12.94 16 18 H 0.08 3.85 7.82 -2.91 -0.02 3.83 16 19 C -0.05 -2.89 5.14 84.86 0.44 -2.45 16 20 N -0.94 -54.53 10.54 21.65 0.23 -54.30 16 21 Si 0.97 44.10 29.57 68.60 2.03 46.13 16 22 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 23 H -0.30 -13.68 7.11 99.48 0.71 -12.98 16 24 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 25 C 0.10 3.30 6.40 86.73 0.56 3.85 16 26 C -0.14 -2.49 5.38 30.64 0.16 -2.33 16 27 C 0.52 11.36 7.41 87.90 0.65 12.02 16 28 O -0.56 -16.54 15.12 -3.03 -0.05 -16.59 16 29 H 0.04 0.86 6.80 -2.39 -0.02 0.85 16 30 H 0.09 0.81 8.14 -2.39 -0.02 0.80 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.12 1.05 8.07 -2.39 -0.02 1.03 16 33 H 0.04 0.98 6.77 -2.39 -0.02 0.96 16 34 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.07 1.48 6.97 -2.39 -0.02 1.46 16 38 H 0.10 1.46 5.42 -2.39 -0.01 1.44 16 39 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.05 1.86 7.28 -2.39 -0.02 1.84 16 41 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 42 H 0.01 0.45 7.38 -2.39 -0.02 0.43 16 43 H 0.01 0.70 7.21 -2.38 -0.02 0.68 16 44 H 0.02 0.90 6.29 -2.38 -0.01 0.88 16 45 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 46 H 0.06 2.01 8.14 -2.39 -0.02 2.00 16 47 H 0.05 1.78 6.13 -2.39 -0.01 1.77 16 48 H 0.10 2.00 7.90 -2.39 -0.02 1.98 16 49 H 0.13 1.75 6.77 -2.39 -0.02 1.74 16 Total: -1.00 -72.42 378.66 3.30 -69.12 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 0.94 Total: 10.64 kcal Atomic # 6 Polarization: 18.93 SS G_CDS: 7.20 Total: 26.12 kcal Atomic # 7 Polarization: -109.42 SS G_CDS: -6.77 Total: -116.18 kcal Atomic # 8 Polarization: -35.74 SS G_CDS: -0.09 Total: -35.83 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -72.42 3.30 -69.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971632521.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.532 kcal (2) G-P(sol) polarization free energy of solvation -72.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds