Wall clock time and date at job start Fri Apr 10 2020 18:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47037 * 2 1 4 4 N 1.46494 * 109.47224 * 180.02562 * 3 2 1 5 5 C 1.46765 * 124.35023 * 89.99780 * 4 3 2 6 6 C 1.54485 * 105.55173 * 197.07952 * 5 4 3 7 7 H 1.08997 * 110.97168 * 92.69411 * 6 5 4 8 8 C 1.50697 * 110.97243 * 216.42461 * 6 5 4 9 9 O 1.21284 * 119.99884 * 359.97438 * 8 6 5 10 10 N 1.34776 * 120.00310 * 179.97438 * 8 6 5 11 11 C 1.47428 * 125.64596 * 359.69193 * 10 8 6 12 12 C 1.55122 * 104.72037 * 155.81394 * 11 10 8 13 13 C 1.55152 * 101.48782 * 37.29621 * 12 11 10 14 14 H 1.08999 * 110.87178 * 82.76314 * 13 12 11 15 15 N 1.46502 * 110.72560 * 205.96494 * 13 12 11 16 16 C 1.46503 * 119.99533 * 53.52213 * 15 13 12 17 17 C 1.36934 * 120.00216 * 233.52380 * 15 13 12 18 18 H 1.07996 * 120.00339 * 20.41219 * 17 15 13 19 19 C 1.38812 * 119.99680 * 200.40881 * 17 15 13 20 20 N 1.31625 * 120.00079 * 15.02523 * 19 17 15 21 21 Si 1.86800 * 119.99921 * 195.01698 * 19 17 15 22 22 H 1.48506 * 109.47009 * 85.00781 * 21 19 17 23 23 H 1.48504 * 109.47285 * 205.00442 * 21 19 17 24 24 H 1.48502 * 109.47138 * 325.00589 * 21 19 17 25 25 C 1.47018 * 125.65013 * 179.97438 * 10 8 6 26 26 C 1.54631 * 101.76330 * 334.54240 * 6 5 4 27 27 C 1.34621 * 124.46813 * 270.02692 * 4 3 2 28 28 O 1.21281 * 124.90983 * 359.55495 * 27 4 3 29 29 H 1.09003 * 109.47069 * 300.00072 * 1 2 3 30 30 H 1.09000 * 109.47151 * 59.99684 * 1 2 3 31 31 H 1.08998 * 109.47208 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46971 * 240.00418 * 2 1 3 33 33 H 1.08993 * 109.47094 * 119.99900 * 2 1 3 34 34 H 1.09003 * 109.47250 * 60.00039 * 3 2 1 35 35 H 1.09000 * 109.47408 * 300.00159 * 3 2 1 36 36 H 1.09001 * 110.24419 * 78.03851 * 5 4 3 37 37 H 1.08994 * 110.24493 * 316.12326 * 5 4 3 38 38 H 1.09002 * 110.36519 * 274.74634 * 11 10 8 39 39 H 1.09004 * 110.36422 * 37.06756 * 11 10 8 40 40 H 1.09003 * 111.19998 * 279.18896 * 12 11 10 41 41 H 1.09007 * 110.93618 * 155.28833 * 12 11 10 42 42 H 1.08996 * 109.47306 * 95.17845 * 16 15 13 43 43 H 1.09005 * 109.46942 * 215.18042 * 16 15 13 44 44 H 1.09003 * 109.47097 * 335.17188 * 16 15 13 45 45 H 0.96997 * 119.99590 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.88412 * 300.44318 * 25 10 8 47 47 H 1.09003 * 109.88220 * 61.45297 * 25 10 8 48 48 H 1.09002 * 110.48606 * 143.47210 * 26 6 5 49 49 H 1.08999 * 110.48671 * 266.12191 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3326 1.4427 -1.2127 6 6 5.7410 1.0056 -0.7525 7 1 5.8660 -0.0728 -0.8498 8 6 6.8109 1.7409 -1.5179 9 8 6.5016 2.5512 -2.3657 10 7 8.1113 1.4981 -1.2602 11 6 8.6257 0.5484 -0.2568 12 6 10.0462 0.1771 -0.7573 13 6 10.5371 1.5336 -1.3283 14 1 10.9299 2.1696 -0.5350 15 7 11.5464 1.3233 -2.3691 16 6 11.2574 0.4405 -3.5020 17 6 12.7600 1.9517 -2.2830 18 1 13.1092 2.3237 -1.3311 19 6 13.5414 2.1106 -3.4192 20 7 13.0125 1.9349 -4.6116 21 14 15.3437 2.5740 -3.2559 22 1 16.1531 1.3470 -3.0443 23 1 15.7937 3.2560 -4.4959 24 1 15.5170 3.4873 -2.0978 25 6 9.2519 2.1408 -1.9293 26 6 5.7330 1.4306 0.7342 27 6 4.2673 1.4419 1.1089 28 8 3.8407 1.4489 2.2442 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9564 -0.8899 36 1 4.3702 2.4432 -1.6436 37 1 3.9365 0.7340 -1.9399 38 1 8.6781 1.0232 0.7230 39 1 7.9943 -0.3392 -0.2159 40 1 10.0031 -0.5827 -1.5377 41 1 10.6772 -0.1502 0.0692 42 1 10.8954 1.0337 -4.3417 43 1 12.1663 -0.0856 -3.7938 44 1 10.4954 -0.2835 -3.2132 45 1 13.5585 2.0463 -5.4055 46 1 9.2135 1.9420 -3.0003 47 1 9.2286 3.2159 -1.7509 48 1 6.2763 0.7062 1.3410 49 1 6.1637 2.4253 0.8489 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972452078.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:21 Heat of formation + Delta-G solvation = -61.715862 kcal Electronic energy + Delta-G solvation = -28026.586006 eV Core-core repulsion = 24181.515306 eV Total energy + Delta-G solvation = -3845.070700 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.96834 -40.66047 -38.96020 -37.46857 -36.54426 -35.75123 -33.54553 -32.49845 -31.14118 -29.50145 -28.74146 -28.05901 -27.27169 -25.55215 -24.13238 -23.19641 -22.70414 -20.89804 -20.51556 -20.07235 -18.94982 -18.47009 -17.91704 -17.35668 -17.18090 -16.74678 -16.45083 -15.90553 -15.60223 -15.49020 -15.07185 -14.88203 -14.75154 -14.65693 -14.57467 -14.26675 -13.85894 -13.83050 -13.49658 -13.29176 -13.10677 -13.08165 -12.83701 -12.74933 -12.54663 -12.45333 -12.39951 -12.36519 -12.21665 -12.14786 -12.06996 -11.77872 -11.65517 -11.37528 -11.17702 -10.77955 -10.61856 -9.76946 -9.63796 -8.83317 -7.83046 -5.30224 1.44532 1.48848 1.49519 1.53811 1.57834 1.78080 2.07369 2.52066 3.10034 3.29252 3.31136 3.55455 3.62860 3.83351 3.86921 3.99517 4.03613 4.04335 4.18008 4.32447 4.34001 4.41043 4.48449 4.49895 4.53700 4.60497 4.66355 4.70626 4.78467 4.83517 4.86589 4.93586 4.94502 5.08170 5.15563 5.19052 5.23650 5.25220 5.33239 5.35199 5.47622 5.54774 5.65729 5.72941 6.01859 6.31127 6.56719 7.04416 7.09307 7.14210 7.85848 8.28686 9.19951 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.033502 B = 0.002329 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.560104 B =12020.238397 C =12314.678253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C 0.120 3.880 4 N -0.615 5.615 5 C 0.118 3.882 6 C -0.103 4.103 7 H 0.150 0.850 8 C 0.533 3.467 9 O -0.585 6.585 10 N -0.607 5.607 11 C 0.102 3.898 12 C -0.142 4.142 13 C 0.163 3.837 14 H 0.082 0.918 15 N -0.602 5.602 16 C 0.179 3.821 17 C -0.263 4.263 18 H 0.079 0.921 19 C -0.056 4.056 20 N -0.940 5.940 21 Si 0.970 3.030 22 H -0.284 1.284 23 H -0.301 1.301 24 H -0.267 1.267 25 C 0.098 3.902 26 C -0.135 4.135 27 C 0.515 3.485 28 O -0.572 6.572 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.049 0.951 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.075 0.925 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.110 0.890 40 H 0.069 0.931 41 H 0.099 0.901 42 H -0.005 1.005 43 H 0.018 0.982 44 H 0.036 0.964 45 H 0.247 0.753 46 H 0.036 0.964 47 H 0.043 0.957 48 H 0.138 0.862 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.515 -7.303 10.746 24.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C -0.001 4.001 4 N -0.348 5.348 5 C -0.005 4.005 6 C -0.125 4.125 7 H 0.167 0.833 8 C 0.322 3.678 9 O -0.465 6.465 10 N -0.339 5.339 11 C -0.020 4.020 12 C -0.181 4.181 13 C 0.055 3.945 14 H 0.100 0.900 15 N -0.323 5.323 16 C 0.034 3.966 17 C -0.393 4.393 18 H 0.097 0.903 19 C -0.251 4.251 20 N -0.586 5.586 21 Si 0.798 3.202 22 H -0.211 1.211 23 H -0.228 1.228 24 H -0.192 1.192 25 C -0.028 4.028 26 C -0.175 4.175 27 C 0.304 3.696 28 O -0.452 6.452 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.117 0.883 36 H 0.094 0.906 37 H 0.125 0.875 38 H 0.115 0.885 39 H 0.128 0.872 40 H 0.088 0.912 41 H 0.117 0.883 42 H 0.013 0.987 43 H 0.036 0.964 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.055 0.945 47 H 0.061 0.939 48 H 0.156 0.844 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -20.962 -6.838 10.704 24.510 hybrid contribution 1.225 0.743 -0.787 1.634 sum -19.737 -6.095 9.918 22.914 Atomic orbital electron populations 1.21683 0.93861 1.02586 1.02395 1.21844 0.97207 0.96031 1.02226 1.21621 0.76808 0.98061 1.03652 1.48511 1.06992 1.72293 1.06998 1.22009 0.87899 1.03719 0.86900 1.22133 0.92516 1.03359 0.94470 0.83276 1.20337 0.82381 0.82270 0.82790 1.90711 1.82018 1.37614 1.36202 1.48541 1.04349 1.42142 1.38865 1.22713 0.94646 0.93039 0.91587 1.23266 0.95750 0.97548 1.01536 1.21590 0.86311 0.95934 0.90689 0.90026 1.44148 1.12622 1.51127 1.24443 1.20475 0.96582 0.91055 0.88476 1.19623 0.94029 1.32026 0.93583 0.90292 1.25788 1.02890 1.01378 0.95068 1.70271 1.35552 1.55558 0.97238 0.85243 0.80503 0.77782 0.76658 1.21066 1.22769 1.19221 1.22496 0.87094 0.96475 0.96689 1.22350 0.94065 1.06144 0.94965 1.21201 0.89962 0.74386 0.84078 1.90706 1.79453 1.52536 1.22510 0.92791 0.91454 0.91803 0.90765 0.93260 0.91165 0.88350 0.90642 0.87519 0.88544 0.87179 0.91206 0.88286 0.98693 0.96362 0.94548 0.94383 0.94535 0.93888 0.84395 0.87748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 71.98 0.71 -0.71 16 2 C -0.13 -1.67 6.26 30.60 0.19 -1.48 16 3 C 0.12 1.75 5.94 86.38 0.51 2.26 16 4 N -0.62 -10.79 2.94 -817.69 -2.40 -13.20 16 5 C 0.12 1.91 6.70 86.83 0.58 2.49 16 6 C -0.10 -1.64 2.77 -10.48 -0.03 -1.66 16 7 H 0.15 1.46 7.73 -2.39 -0.02 1.44 16 8 C 0.53 13.82 7.11 87.66 0.62 14.44 16 9 O -0.58 -20.70 15.83 -3.04 -0.05 -20.75 16 10 N -0.61 -15.97 3.32 -811.36 -2.70 -18.66 16 11 C 0.10 1.80 5.96 86.93 0.52 2.32 16 12 C -0.14 -3.54 6.60 32.06 0.21 -3.32 16 13 C 0.16 5.82 3.44 46.18 0.16 5.98 16 14 H 0.08 2.85 7.91 -2.39 -0.02 2.83 16 15 N -0.60 -28.28 2.93 -696.15 -2.04 -30.32 16 16 C 0.18 8.54 7.80 127.77 1.00 9.53 16 17 C -0.26 -13.74 9.64 84.03 0.81 -12.93 16 18 H 0.08 3.93 7.82 -2.91 -0.02 3.91 16 19 C -0.06 -3.08 5.06 84.86 0.43 -2.65 16 20 N -0.94 -55.28 10.67 21.65 0.23 -55.05 16 21 Si 0.97 44.19 29.58 68.60 2.03 46.22 16 22 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 23 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 25 C 0.10 3.55 6.51 86.73 0.56 4.12 16 26 C -0.14 -2.10 5.71 30.59 0.17 -1.93 16 27 C 0.51 10.99 8.03 87.87 0.71 11.69 16 28 O -0.57 -16.70 17.60 -3.03 -0.05 -16.75 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.54 16 30 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.07 1.21 7.93 -2.39 -0.02 1.19 16 35 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.08 1.57 6.96 -2.39 -0.02 1.55 16 37 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.11 1.19 7.40 -2.38 -0.02 1.17 16 40 H 0.07 1.91 6.05 -2.39 -0.01 1.89 16 41 H 0.10 2.13 8.14 -2.38 -0.02 2.12 16 42 H -0.01 -0.29 7.33 -2.39 -0.02 -0.30 16 43 H 0.02 0.93 7.22 -2.38 -0.02 0.91 16 44 H 0.04 1.45 6.03 -2.39 -0.01 1.43 16 45 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 46 H 0.04 1.59 7.13 -2.39 -0.02 1.58 16 47 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 48 H 0.14 1.44 8.00 -2.39 -0.02 1.42 16 49 H 0.10 1.80 7.89 -2.39 -0.02 1.78 16 Total: -1.00 -74.84 386.80 3.10 -71.74 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: 0.92 Total: 8.62 kcal Atomic # 6 Polarization: 20.98 SS G_CDS: 7.16 Total: 28.15 kcal Atomic # 7 Polarization: -110.32 SS G_CDS: -6.91 Total: -117.23 kcal Atomic # 8 Polarization: -37.40 SS G_CDS: -0.10 Total: -37.50 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -74.84 3.10 -71.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972452078.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.022 kcal (2) G-P(sol) polarization free energy of solvation -74.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds