Wall clock time and date at job start Fri Apr 10 2020 18:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.49607 * 2 1 4 4 C 1.53032 * 109.49978 * 239.92817 * 2 1 3 5 5 C 1.53044 * 109.53988 * 178.64866 * 4 2 1 6 6 C 1.53193 * 109.31039 * 61.36871 * 5 4 2 7 7 N 1.46934 * 108.77293 * 305.36427 * 6 5 4 8 8 C 1.34777 * 120.62600 * 233.58694 * 7 6 5 9 9 O 1.21350 * 119.99585 * 184.72957 * 8 7 6 10 10 C 1.49445 * 120.00447 * 4.72984 * 8 7 6 11 11 O 1.21354 * 119.99947 * 353.64913 * 10 8 7 12 12 N 1.34782 * 120.00193 * 173.64246 * 10 8 7 13 13 C 1.47018 * 125.64479 * 0.03023 * 12 10 8 14 14 C 1.54326 * 107.26904 * 181.03703 * 13 12 10 15 15 C 1.55450 * 102.96894 * 22.19275 * 14 13 12 16 16 H 1.08998 * 111.01365 * 82.52562 * 15 14 13 17 17 N 1.46505 * 111.11475 * 206.46569 * 15 14 13 18 18 C 1.46494 * 119.99963 * 53.55751 * 17 15 14 19 19 C 1.36931 * 119.99612 * 233.55294 * 17 15 14 20 20 H 1.08003 * 120.00610 * 34.50987 * 19 17 15 21 21 C 1.38820 * 119.99561 * 214.50847 * 19 17 15 22 22 N 1.31610 * 120.00070 * 5.22244 * 21 19 17 23 23 Si 1.86803 * 119.99558 * 185.22357 * 21 19 17 24 24 H 1.48498 * 109.47379 * 0.02562 * 23 21 19 25 25 H 1.48510 * 109.46998 * 120.00075 * 23 21 19 26 26 H 1.48497 * 109.47428 * 239.99859 * 23 21 19 27 27 C 1.47421 * 125.64646 * 180.02562 * 12 10 8 28 28 C 1.46922 * 118.73657 * 53.86031 * 7 6 5 29 29 H 1.09000 * 109.46851 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46871 * 300.07141 * 1 2 3 31 31 H 1.09002 * 109.47122 * 60.07215 * 1 2 3 32 32 H 1.09000 * 109.45970 * 58.63243 * 4 2 1 33 33 H 1.08998 * 109.45983 * 298.67042 * 4 2 1 34 34 H 1.09004 * 109.49648 * 301.41637 * 5 4 2 35 35 H 1.08994 * 109.52314 * 181.33465 * 5 4 2 36 36 H 1.09002 * 109.58330 * 185.57993 * 6 5 4 37 37 H 1.08997 * 109.58866 * 65.15005 * 6 5 4 38 38 H 1.09008 * 109.88432 * 300.44691 * 13 12 10 39 39 H 1.08993 * 109.88610 * 61.61707 * 13 12 10 40 40 H 1.09006 * 110.72254 * 140.55476 * 14 13 12 41 41 H 1.09002 * 110.71858 * 263.65025 * 14 13 12 42 42 H 1.08997 * 109.47550 * 85.01742 * 18 17 15 43 43 H 1.09001 * 109.47217 * 205.02096 * 18 17 15 44 44 H 1.09007 * 109.47478 * 325.01879 * 18 17 15 45 45 H 0.97006 * 119.99820 * 180.02562 * 22 21 19 46 46 H 1.08998 * 110.36783 * 274.72982 * 27 12 10 47 47 H 1.08997 * 110.37109 * 36.94663 * 27 12 10 48 48 H 1.09003 * 109.58400 * 65.92942 * 28 7 6 49 49 H 1.09002 * 109.58233 * 186.35044 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0408 -0.7228 -1.2484 5 6 3.5709 -0.6940 -1.2665 6 6 4.1060 -1.4255 -0.0314 7 7 3.5053 -0.8281 1.1692 8 6 4.2819 -0.3850 2.1776 9 8 3.7730 0.0272 3.1992 10 6 5.7697 -0.4013 2.0378 11 8 6.2823 -0.9183 1.0669 12 7 6.5423 0.1582 2.9900 13 6 6.0554 0.8148 4.2120 14 6 7.2919 1.3236 4.9825 15 6 8.3767 1.4245 3.8737 16 1 8.2849 2.3595 3.3210 17 7 9.7216 1.2794 4.4363 18 6 10.0474 0.1160 5.2648 19 6 10.6741 2.2312 4.1877 20 1 10.3900 3.2695 4.0996 21 6 12.0050 1.8616 4.0488 22 7 12.3382 0.5884 4.0534 23 14 13.3227 3.1714 3.8555 24 1 12.6923 4.5157 3.8829 25 1 14.2986 3.0600 4.9694 26 1 14.0250 2.9799 2.5612 27 6 8.0154 0.2131 2.9786 28 6 2.0418 -0.7286 1.2519 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5150 0.8894 31 1 -0.3633 0.5127 -0.8906 32 1 1.6578 -0.2244 -2.1389 33 1 1.6973 -1.7572 -1.2352 34 1 3.9154 0.3401 -1.2546 35 1 3.9339 -1.1881 -2.1676 36 1 5.1903 -1.3228 0.0128 37 1 3.8387 -2.4807 -0.0872 38 1 5.4106 1.6540 3.9502 39 1 5.5060 0.0993 4.8236 40 1 7.0972 2.3022 5.4213 41 1 7.5879 0.6098 5.7512 42 1 10.3394 -0.7161 4.6241 43 1 10.8707 0.3656 5.9341 44 1 9.1743 -0.1673 5.8529 45 1 13.2683 0.3302 3.9567 46 1 8.4324 -0.7038 3.3951 47 1 8.3815 0.3687 1.9638 48 1 1.6096 -1.7282 1.2985 49 1 1.7636 -0.1661 2.1431 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972498587.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:30 Heat of formation + Delta-G solvation = -27.011451 kcal Electronic energy + Delta-G solvation = -28519.368559 eV Core-core repulsion = 24675.802755 eV Total energy + Delta-G solvation = -3843.565803 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.97996 -39.18194 -37.75428 -37.55176 -34.91989 -33.81576 -32.04521 -31.69468 -29.85621 -28.28036 -27.32049 -26.27556 -26.03152 -24.27832 -22.59460 -22.42384 -21.95993 -20.24547 -19.37955 -19.10017 -17.12612 -17.02773 -16.87465 -16.14625 -15.93358 -15.42944 -15.28857 -14.66101 -14.50341 -14.28260 -14.09082 -13.63982 -13.44358 -13.32229 -13.16803 -12.92419 -12.85089 -12.52320 -12.39457 -12.37706 -12.04137 -11.97104 -11.57257 -11.48460 -11.32476 -11.11779 -10.94398 -10.87971 -10.69394 -10.58933 -10.51264 -10.36496 -10.27151 -9.99633 -9.78406 -8.92989 -8.87285 -8.60975 -8.44301 -6.69753 -5.84870 -3.41262 1.50505 2.31635 3.27513 3.32785 3.40263 3.42151 3.45570 4.19484 4.41477 4.44340 4.49384 4.61353 4.84262 5.02482 5.06819 5.16353 5.23631 5.25316 5.33194 5.40348 5.41961 5.47019 5.51652 5.53463 5.63969 5.71229 5.76512 5.81310 5.85042 5.87915 5.92696 5.95715 6.11896 6.13733 6.22591 6.31199 6.38851 6.54899 6.57441 6.80331 6.86919 7.05043 7.25296 7.48299 7.60961 7.74968 7.78660 8.10505 8.38576 9.14829 9.73112 10.28673 11.20690 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.025066 B = 0.002643 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.765699 B =10592.385691 C =11008.434013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 H 0.075 0.925 4 C -0.117 4.117 5 C -0.132 4.132 6 C 0.042 3.958 7 N -0.583 5.583 8 C 0.511 3.489 9 O -0.520 6.520 10 C 0.516 3.484 11 O -0.520 6.520 12 N -0.575 5.575 13 C 0.110 3.890 14 C -0.158 4.158 15 C 0.173 3.827 16 H 0.080 0.920 17 N -0.580 5.580 18 C 0.156 3.844 19 C -0.268 4.268 20 H 0.067 0.933 21 C 0.014 3.986 22 N -0.898 5.898 23 Si 0.906 3.094 24 H -0.276 1.276 25 H -0.288 1.288 26 H -0.288 1.288 27 C 0.083 3.917 28 C 0.113 3.887 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.165 0.835 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.022 0.978 43 H 0.051 0.949 44 H 0.002 0.998 45 H 0.255 0.745 46 H 0.075 0.925 47 H 0.078 0.922 48 H 0.070 0.930 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.267 -3.134 -6.848 22.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.126 4.126 3 H 0.093 0.907 4 C -0.154 4.154 5 C -0.171 4.171 6 C -0.079 4.079 7 N -0.317 5.317 8 C 0.294 3.706 9 O -0.396 6.396 10 C 0.300 3.700 11 O -0.400 6.400 12 N -0.307 5.307 13 C -0.012 4.012 14 C -0.198 4.198 15 C 0.062 3.938 16 H 0.098 0.902 17 N -0.300 5.300 18 C 0.011 3.989 19 C -0.397 4.397 20 H 0.084 0.916 21 C -0.186 4.186 22 N -0.540 5.540 23 Si 0.735 3.265 24 H -0.201 1.201 25 H -0.215 1.215 26 H -0.215 1.215 27 C -0.041 4.041 28 C -0.010 4.010 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.181 0.819 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.041 0.959 43 H 0.070 0.930 44 H 0.020 0.980 45 H 0.065 0.935 46 H 0.093 0.907 47 H 0.096 0.904 48 H 0.088 0.912 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -21.080 -3.287 -6.811 22.396 hybrid contribution 0.583 0.416 -0.292 0.773 sum -20.498 -2.871 -7.103 21.883 Atomic orbital electron populations 1.21765 0.94318 1.02044 1.02103 1.21582 0.95913 1.00176 0.94924 0.90700 1.21634 0.95903 1.00607 0.97291 1.21892 0.95311 1.01591 0.98257 1.23436 1.06115 0.95960 0.82350 1.47955 1.06393 1.58973 1.18329 1.20122 0.88059 0.78749 0.83693 1.90726 1.75077 1.45915 1.27904 1.19735 0.87323 0.80101 0.82891 1.90226 1.73884 1.46331 1.29602 1.48453 1.08807 1.52866 1.20549 1.22192 0.96977 0.97156 0.84904 1.23311 0.94898 1.01839 0.99715 1.21593 0.86062 0.95119 0.91014 0.90199 1.43729 1.06767 1.24838 1.54670 1.20814 0.95540 0.89481 0.93053 1.19180 0.87078 0.88081 1.45389 0.91569 1.25361 0.98526 0.95929 0.98803 1.70008 1.17036 1.14317 1.52683 0.86181 0.81702 0.81151 0.77466 1.20087 1.21501 1.21457 1.23361 0.75706 1.02252 1.02761 1.21862 0.78995 1.00984 0.99133 0.92473 0.92341 0.92268 0.91787 0.91837 0.91639 0.90609 0.81941 0.91924 0.91066 0.90874 0.90420 0.90289 0.95948 0.92977 0.98013 0.93476 0.90665 0.90359 0.91224 0.88905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.20 37.16 0.34 -0.57 16 2 C -0.11 -0.88 2.88 -90.28 -0.26 -1.14 16 3 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 4 C -0.12 -0.90 5.16 -26.69 -0.14 -1.04 16 5 C -0.13 -1.22 6.08 -26.61 -0.16 -1.38 16 6 C 0.04 0.47 6.27 -3.71 -0.02 0.45 16 7 N -0.58 -7.24 2.97 -173.01 -0.51 -7.76 16 8 C 0.51 7.67 7.71 -11.59 -0.09 7.58 16 9 O -0.52 -8.41 13.60 5.50 0.07 -8.34 16 10 C 0.52 8.59 7.84 -11.58 -0.09 8.50 16 11 O -0.52 -9.21 13.27 5.49 0.07 -9.13 16 12 N -0.58 -9.79 3.33 -171.04 -0.57 -10.35 16 13 C 0.11 1.69 5.49 -3.06 -0.02 1.68 16 14 C -0.16 -2.57 6.51 -24.74 -0.16 -2.73 16 15 C 0.17 3.42 3.56 -65.63 -0.23 3.18 16 16 H 0.08 1.59 7.96 -51.93 -0.41 1.18 16 17 N -0.58 -13.87 2.92 -170.86 -0.50 -14.37 16 18 C 0.16 3.64 8.00 59.84 0.48 4.12 16 19 C -0.27 -7.07 9.49 -15.06 -0.14 -7.21 16 20 H 0.07 1.72 7.83 -52.48 -0.41 1.31 16 21 C 0.01 0.38 5.17 -17.43 -0.09 0.29 16 22 N -0.90 -25.41 11.12 55.49 0.62 -24.79 16 23 Si 0.91 21.17 29.56 -169.99 -5.02 16.15 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 C 0.08 1.59 6.49 -2.54 -0.02 1.57 16 28 C 0.11 1.12 5.73 -3.49 -0.02 1.10 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.16 2.25 3.70 -57.19 -0.21 2.04 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 1.05 7.73 -51.92 -0.40 0.65 16 39 H 0.07 1.10 7.57 -51.93 -0.39 0.70 16 40 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.08 1.32 6.03 -51.93 -0.31 1.01 16 42 H 0.02 0.56 7.50 -51.93 -0.39 0.17 16 43 H 0.05 1.32 7.26 -51.93 -0.38 0.94 16 44 H 0.00 0.03 6.03 -51.92 -0.31 -0.28 16 45 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 46 H 0.08 1.54 7.09 -51.93 -0.37 1.17 16 47 H 0.08 1.60 8.03 -51.93 -0.42 1.18 16 48 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.09 1.01 7.03 -51.93 -0.37 0.64 16 LS Contribution 375.33 15.07 5.66 5.66 Total: -1.00 -29.19 375.33 -8.97 -38.16 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -8.16 Total: 0.39 kcal Atomic # 6 Polarization: 15.02 SS G_CDS: -0.62 Total: 14.40 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -0.96 Total: -57.28 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: 0.15 Total: -17.47 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.19 -8.97 -38.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972498587.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.147 kcal (2) G-P(sol) polarization free energy of solvation -29.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds