Wall clock time and date at job start Fri Apr 10 2020 18:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.49607 * 2 1 4 4 C 1.53032 * 109.49978 * 239.92817 * 2 1 3 5 5 C 1.53044 * 109.53988 * 178.64866 * 4 2 1 6 6 C 1.53193 * 109.31039 * 61.36871 * 5 4 2 7 7 N 1.46934 * 108.77293 * 305.36427 * 6 5 4 8 8 C 1.34777 * 120.62600 * 233.58694 * 7 6 5 9 9 O 1.21350 * 119.99585 * 184.72957 * 8 7 6 10 10 C 1.49445 * 120.00447 * 4.72984 * 8 7 6 11 11 O 1.21354 * 119.99947 * 353.64913 * 10 8 7 12 12 N 1.34782 * 120.00193 * 173.64246 * 10 8 7 13 13 C 1.47018 * 125.64479 * 0.03023 * 12 10 8 14 14 C 1.54326 * 107.26904 * 181.03703 * 13 12 10 15 15 C 1.55450 * 102.96894 * 22.19275 * 14 13 12 16 16 H 1.08998 * 111.01365 * 82.52562 * 15 14 13 17 17 N 1.46505 * 111.11475 * 206.46569 * 15 14 13 18 18 C 1.46494 * 119.99963 * 53.55751 * 17 15 14 19 19 C 1.36931 * 119.99612 * 233.55294 * 17 15 14 20 20 H 1.08003 * 120.00610 * 34.50987 * 19 17 15 21 21 C 1.38820 * 119.99561 * 214.50847 * 19 17 15 22 22 N 1.31610 * 120.00070 * 5.22244 * 21 19 17 23 23 Si 1.86803 * 119.99558 * 185.22357 * 21 19 17 24 24 H 1.48498 * 109.47379 * 0.02562 * 23 21 19 25 25 H 1.48510 * 109.46998 * 120.00075 * 23 21 19 26 26 H 1.48497 * 109.47428 * 239.99859 * 23 21 19 27 27 C 1.47421 * 125.64646 * 180.02562 * 12 10 8 28 28 C 1.46922 * 118.73657 * 53.86031 * 7 6 5 29 29 H 1.09000 * 109.46851 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46871 * 300.07141 * 1 2 3 31 31 H 1.09002 * 109.47122 * 60.07215 * 1 2 3 32 32 H 1.09000 * 109.45970 * 58.63243 * 4 2 1 33 33 H 1.08998 * 109.45983 * 298.67042 * 4 2 1 34 34 H 1.09004 * 109.49648 * 301.41637 * 5 4 2 35 35 H 1.08994 * 109.52314 * 181.33465 * 5 4 2 36 36 H 1.09002 * 109.58330 * 185.57993 * 6 5 4 37 37 H 1.08997 * 109.58866 * 65.15005 * 6 5 4 38 38 H 1.09008 * 109.88432 * 300.44691 * 13 12 10 39 39 H 1.08993 * 109.88610 * 61.61707 * 13 12 10 40 40 H 1.09006 * 110.72254 * 140.55476 * 14 13 12 41 41 H 1.09002 * 110.71858 * 263.65025 * 14 13 12 42 42 H 1.08997 * 109.47550 * 85.01742 * 18 17 15 43 43 H 1.09001 * 109.47217 * 205.02096 * 18 17 15 44 44 H 1.09007 * 109.47478 * 325.01879 * 18 17 15 45 45 H 0.97006 * 119.99820 * 180.02562 * 22 21 19 46 46 H 1.08998 * 110.36783 * 274.72982 * 27 12 10 47 47 H 1.08997 * 110.37109 * 36.94663 * 27 12 10 48 48 H 1.09003 * 109.58400 * 65.92942 * 28 7 6 49 49 H 1.09002 * 109.58233 * 186.35044 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0408 -0.7228 -1.2484 5 6 3.5709 -0.6940 -1.2665 6 6 4.1060 -1.4255 -0.0314 7 7 3.5053 -0.8281 1.1692 8 6 4.2819 -0.3850 2.1776 9 8 3.7730 0.0272 3.1992 10 6 5.7697 -0.4013 2.0378 11 8 6.2823 -0.9183 1.0669 12 7 6.5423 0.1582 2.9900 13 6 6.0554 0.8148 4.2120 14 6 7.2919 1.3236 4.9825 15 6 8.3767 1.4245 3.8737 16 1 8.2849 2.3595 3.3210 17 7 9.7216 1.2794 4.4363 18 6 10.0474 0.1160 5.2648 19 6 10.6741 2.2312 4.1877 20 1 10.3900 3.2695 4.0996 21 6 12.0050 1.8616 4.0488 22 7 12.3382 0.5884 4.0534 23 14 13.3227 3.1714 3.8555 24 1 12.6923 4.5157 3.8829 25 1 14.2986 3.0600 4.9694 26 1 14.0250 2.9799 2.5612 27 6 8.0154 0.2131 2.9786 28 6 2.0418 -0.7286 1.2519 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5150 0.8894 31 1 -0.3633 0.5127 -0.8906 32 1 1.6578 -0.2244 -2.1389 33 1 1.6973 -1.7572 -1.2352 34 1 3.9154 0.3401 -1.2546 35 1 3.9339 -1.1881 -2.1676 36 1 5.1903 -1.3228 0.0128 37 1 3.8387 -2.4807 -0.0872 38 1 5.4106 1.6540 3.9502 39 1 5.5060 0.0993 4.8236 40 1 7.0972 2.3022 5.4213 41 1 7.5879 0.6098 5.7512 42 1 10.3394 -0.7161 4.6241 43 1 10.8707 0.3656 5.9341 44 1 9.1743 -0.1673 5.8529 45 1 13.2683 0.3302 3.9567 46 1 8.4324 -0.7038 3.3951 47 1 8.3815 0.3687 1.9638 48 1 1.6096 -1.7282 1.2985 49 1 1.7636 -0.1661 2.1431 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972498587.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:29 Heat of formation + Delta-G solvation = -43.816300 kcal Electronic energy + Delta-G solvation = -28520.097272 eV Core-core repulsion = 24675.802755 eV Total energy + Delta-G solvation = -3844.294516 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.17155 -40.38677 -39.02805 -38.73251 -36.62860 -34.73303 -33.50339 -32.82716 -31.43725 -29.76378 -28.21357 -28.00292 -27.19365 -25.66112 -24.16225 -23.25510 -23.15620 -21.11432 -20.98400 -20.24633 -18.95218 -18.31931 -18.04931 -17.59528 -17.21688 -16.78170 -16.25173 -16.15208 -15.48682 -15.32727 -15.20869 -15.03656 -14.89771 -14.52882 -14.48273 -14.25130 -14.00526 -13.93108 -13.61093 -13.50722 -13.18321 -13.12073 -12.80585 -12.76035 -12.60042 -12.42119 -12.37626 -12.17787 -12.04761 -12.03722 -11.86852 -11.77322 -11.54176 -11.39778 -11.32992 -10.63387 -10.10105 -9.97558 -9.73128 -8.65566 -7.88148 -5.47411 0.25400 1.12601 1.47252 1.49086 1.59124 2.02484 2.26125 2.50012 3.02563 3.27573 3.50283 3.73358 3.83367 3.89344 3.91413 3.94644 4.07922 4.18646 4.30575 4.31609 4.39255 4.41108 4.56451 4.64070 4.67883 4.75890 4.80281 4.84305 4.86911 4.87815 4.90269 5.02520 5.06370 5.10257 5.15349 5.17199 5.26381 5.28244 5.32173 5.39367 5.42473 5.49276 5.65282 5.66861 5.96112 6.19850 6.37417 6.58823 6.83923 7.13959 7.79296 8.30085 9.15643 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.025066 B = 0.002643 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.765699 B =10592.385691 C =11008.434013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.103 4.103 3 H 0.060 0.940 4 C -0.112 4.112 5 C -0.129 4.129 6 C 0.040 3.960 7 N -0.576 5.576 8 C 0.511 3.489 9 O -0.535 6.535 10 C 0.511 3.489 11 O -0.536 6.536 12 N -0.580 5.580 13 C 0.119 3.881 14 C -0.142 4.142 15 C 0.167 3.833 16 H 0.077 0.923 17 N -0.596 5.596 18 C 0.171 3.829 19 C -0.273 4.273 20 H 0.070 0.930 21 C -0.040 4.040 22 N -0.931 5.931 23 Si 0.969 3.031 24 H -0.264 1.264 25 H -0.290 1.290 26 H -0.293 1.293 27 C 0.097 3.903 28 C 0.109 3.891 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.050 0.950 35 H 0.090 0.910 36 H 0.140 0.860 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.077 0.923 42 H -0.004 1.004 43 H 0.026 0.974 44 H 0.034 0.966 45 H 0.251 0.749 46 H 0.059 0.941 47 H 0.058 0.942 48 H 0.088 0.912 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.879 -2.706 -7.410 25.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.122 4.122 3 H 0.079 0.921 4 C -0.150 4.150 5 C -0.167 4.167 6 C -0.081 4.081 7 N -0.308 5.308 8 C 0.293 3.707 9 O -0.413 6.413 10 C 0.296 3.704 11 O -0.416 6.416 12 N -0.312 5.312 13 C -0.003 4.003 14 C -0.181 4.181 15 C 0.058 3.942 16 H 0.096 0.904 17 N -0.317 5.317 18 C 0.026 3.974 19 C -0.403 4.403 20 H 0.088 0.912 21 C -0.237 4.237 22 N -0.575 5.575 23 Si 0.797 3.203 24 H -0.188 1.188 25 H -0.217 1.217 26 H -0.220 1.220 27 C -0.028 4.028 28 C -0.012 4.012 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.108 0.892 36 H 0.156 0.844 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.115 0.885 41 H 0.096 0.904 42 H 0.014 0.986 43 H 0.045 0.955 44 H 0.052 0.948 45 H 0.060 0.940 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.106 0.894 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -23.758 -2.853 -7.399 25.047 hybrid contribution 1.296 0.242 -0.191 1.332 sum -22.462 -2.612 -7.590 23.854 Atomic orbital electron populations 1.21731 0.92523 1.02893 1.02593 1.21556 0.97288 0.99129 0.94220 0.92102 1.21625 0.94368 1.01463 0.97511 1.21869 0.96690 1.00511 0.97630 1.23380 1.04716 0.97145 0.82834 1.48095 1.07439 1.57528 1.17737 1.19758 0.87133 0.79461 0.84312 1.90713 1.74880 1.47157 1.28511 1.20214 0.88352 0.79482 0.82376 1.90276 1.74674 1.46622 1.30057 1.48461 1.07724 1.53528 1.21450 1.22210 0.96453 0.97549 0.84091 1.23180 0.93573 1.02964 0.98399 1.21679 0.85086 0.95011 0.92396 0.90448 1.43881 1.07873 1.24445 1.55473 1.20557 0.95902 0.88570 0.92324 1.19498 0.87834 0.88832 1.44155 0.91241 1.26095 1.00626 0.97708 0.99269 1.70164 1.16976 1.16038 1.54360 0.85188 0.79013 0.79347 0.76767 1.18773 1.21653 1.21954 1.22923 0.77418 1.01182 1.01259 1.22101 0.77129 1.02168 0.99808 0.91426 0.92345 0.91364 0.90395 0.90600 0.93071 0.89170 0.84383 0.90337 0.89957 0.90004 0.88542 0.90410 0.98560 0.95535 0.94762 0.94006 0.92278 0.92371 0.89422 0.89804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.20 71.98 0.66 -0.70 16 2 C -0.10 -1.45 2.88 -10.57 -0.03 -1.48 16 3 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 4 C -0.11 -1.41 5.16 30.62 0.16 -1.25 16 5 C -0.13 -2.15 6.08 30.67 0.19 -1.96 16 6 C 0.04 0.85 6.27 86.36 0.54 1.39 16 7 N -0.58 -13.54 2.97 -819.63 -2.43 -15.98 16 8 C 0.51 14.94 7.71 87.27 0.67 15.61 16 9 O -0.53 -16.63 13.60 -3.25 -0.04 -16.67 16 10 C 0.51 17.01 7.84 87.27 0.68 17.70 16 11 O -0.54 -19.29 13.27 -3.26 -0.04 -19.33 16 12 N -0.58 -19.61 3.33 -813.41 -2.71 -22.32 16 13 C 0.12 3.46 5.49 86.73 0.48 3.94 16 14 C -0.14 -4.39 6.51 31.89 0.21 -4.18 16 15 C 0.17 6.60 3.56 46.48 0.17 6.77 16 16 H 0.08 3.07 7.96 -2.39 -0.02 3.06 16 17 N -0.60 -28.78 2.92 -694.47 -2.03 -30.81 16 18 C 0.17 8.16 8.00 127.77 1.02 9.18 16 19 C -0.27 -14.52 9.49 84.04 0.80 -13.72 16 20 H 0.07 3.58 7.83 -2.91 -0.02 3.56 16 21 C -0.04 -2.20 5.17 84.87 0.44 -1.76 16 22 N -0.93 -54.19 11.12 21.65 0.24 -53.95 16 23 Si 0.97 44.03 29.56 68.60 2.03 46.06 16 24 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 25 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 26 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 27 C 0.10 3.79 6.49 86.85 0.56 4.35 16 28 C 0.11 1.95 5.73 86.51 0.50 2.44 16 29 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.09 1.25 8.14 -2.39 -0.02 1.24 16 36 H 0.14 3.81 3.70 -85.66 -0.32 3.50 16 37 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.08 2.26 7.73 -2.38 -0.02 2.24 16 39 H 0.08 2.30 7.57 -2.39 -0.02 2.28 16 40 H 0.10 2.66 8.14 -2.38 -0.02 2.64 16 41 H 0.08 2.45 6.03 -2.39 -0.01 2.44 16 42 H 0.00 -0.21 7.50 -2.39 -0.02 -0.22 16 43 H 0.03 1.36 7.26 -2.39 -0.02 1.34 16 44 H 0.03 1.38 6.03 -2.38 -0.01 1.37 16 45 H 0.25 14.17 8.31 -92.70 -0.77 13.40 16 46 H 0.06 2.50 7.09 -2.39 -0.02 2.48 16 47 H 0.06 2.48 8.03 -2.39 -0.02 2.46 16 48 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.08 1.68 7.03 -2.39 -0.02 1.67 16 Total: -1.00 -63.73 375.33 2.68 -61.05 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.62 Total: 15.62 kcal Atomic # 6 Polarization: 29.29 SS G_CDS: 7.04 Total: 36.33 kcal Atomic # 7 Polarization: -116.13 SS G_CDS: -6.93 Total: -123.05 kcal Atomic # 8 Polarization: -35.92 SS G_CDS: -0.09 Total: -36.01 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -63.73 2.68 -61.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972498587.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.235 kcal (2) G-P(sol) polarization free energy of solvation -63.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds