Wall clock time and date at job start Fri Apr 10 2020 18:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.49852 * 2 1 4 4 C 1.53046 * 109.49756 * 120.05984 * 2 1 3 5 5 C 1.53040 * 109.54153 * 181.35026 * 4 2 1 6 6 C 1.53195 * 109.31046 * 298.63744 * 5 4 2 7 7 N 1.46925 * 108.77572 * 54.63316 * 6 5 4 8 8 C 1.34773 * 120.62704 * 126.36532 * 7 6 5 9 9 O 1.21355 * 120.00192 * 187.03849 * 8 7 6 10 10 C 1.49449 * 120.00299 * 7.04047 * 8 7 6 11 11 O 1.21346 * 119.99936 * 7.21720 * 10 8 7 12 12 N 1.34777 * 120.00282 * 187.21845 * 10 8 7 13 13 C 1.47021 * 125.64939 * 359.95894 * 12 10 8 14 14 C 1.54368 * 107.29325 * 181.12546 * 13 12 10 15 15 C 1.55155 * 102.91759 * 22.14058 * 14 13 12 16 16 H 1.08996 * 111.00785 * 82.63793 * 15 14 13 17 17 N 1.46504 * 111.00527 * 206.45270 * 15 14 13 18 18 C 1.46503 * 119.99553 * 56.81974 * 17 15 14 19 19 C 1.36933 * 119.99941 * 236.81840 * 17 15 14 20 20 H 1.07995 * 120.00566 * 306.74656 * 19 17 15 21 21 C 1.38814 * 119.99952 * 126.75024 * 19 17 15 22 22 N 1.31612 * 120.00172 * 184.02432 * 21 19 17 23 23 Si 1.86803 * 119.99702 * 4.02236 * 21 19 17 24 24 H 1.48506 * 109.46960 * 84.49167 * 23 21 19 25 25 H 1.48503 * 109.47300 * 204.48723 * 23 21 19 26 26 H 1.48499 * 109.47546 * 324.49242 * 23 21 19 27 27 C 1.47421 * 125.65242 * 179.97438 * 12 10 8 28 28 C 1.46925 * 118.74114 * 306.64234 * 7 6 5 29 29 H 1.08999 * 109.47312 * 299.93667 * 1 2 3 30 30 H 1.08998 * 109.46507 * 59.94081 * 1 2 3 31 31 H 1.08998 * 109.46669 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.45836 * 61.33069 * 4 2 1 33 33 H 1.09000 * 109.45020 * 301.36765 * 4 2 1 34 34 H 1.08996 * 109.49851 * 178.68398 * 5 4 2 35 35 H 1.09003 * 109.49556 * 58.58895 * 5 4 2 36 36 H 1.09000 * 109.58660 * 294.84135 * 6 5 4 37 37 H 1.09001 * 109.69718 * 174.48833 * 6 5 4 38 38 H 1.09003 * 109.88025 * 300.51351 * 13 12 10 39 39 H 1.09011 * 109.88325 * 61.67154 * 13 12 10 40 40 H 1.09000 * 110.70533 * 263.79533 * 14 13 12 41 41 H 1.09002 * 110.75826 * 140.50382 * 14 13 12 42 42 H 1.09005 * 109.47086 * 265.08667 * 18 17 15 43 43 H 1.09003 * 109.46666 * 145.09569 * 18 17 15 44 44 H 1.08993 * 109.47593 * 25.08768 * 18 17 15 45 45 H 0.97006 * 120.00119 * 179.97438 * 22 21 19 46 46 H 1.09002 * 110.36439 * 36.99509 * 27 12 10 47 47 H 1.09000 * 110.45936 * 274.72569 * 27 12 10 48 48 H 1.08993 * 109.58860 * 173.14216 * 28 7 6 49 49 H 1.09001 * 109.58243 * 293.57181 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7227 1.2487 5 6 3.5708 -0.6939 1.2668 6 6 4.1060 -1.4255 0.0318 7 7 3.5054 -0.8284 -1.1688 8 6 4.2820 -0.3846 -2.1768 9 8 3.7856 0.2207 -3.1041 10 6 5.7547 -0.6380 -2.1529 11 8 6.2335 -1.3531 -1.2973 12 7 6.5511 -0.0722 -3.0814 13 6 6.1055 0.8103 -4.1696 14 6 7.3547 1.1895 -4.9935 15 6 8.3502 0.0472 -4.6598 16 1 8.1597 -0.8301 -5.2780 17 7 9.7361 0.4988 -4.8068 18 6 10.2126 1.6591 -4.0498 19 6 10.5861 -0.1636 -5.6517 20 1 10.7172 -1.2314 -5.5580 21 6 11.2793 0.5376 -6.6289 22 7 12.0348 -0.1085 -7.4914 23 14 11.1397 2.3982 -6.7196 24 1 12.1083 3.0137 -5.7770 25 1 11.4390 2.8502 -8.1021 26 1 9.7612 2.8098 -6.3517 27 6 8.0132 -0.2359 -3.1743 28 6 2.0423 -0.7186 -1.2469 29 1 -0.3634 0.5128 0.8905 30 1 -0.3632 0.5148 -0.8895 31 1 -0.3632 -1.0277 -0.0005 32 1 1.6972 -1.7570 1.2356 33 1 1.6576 -0.2239 2.1389 34 1 3.9333 -1.1882 2.1681 35 1 3.9154 0.3402 1.2549 36 1 3.8388 -2.4808 0.0879 37 1 5.1904 -1.3251 -0.0135 38 1 5.3899 0.2857 -4.8027 39 1 5.6479 1.7085 -3.7548 40 1 7.7508 2.1526 -4.6716 41 1 7.1254 1.2022 -6.0591 42 1 10.1281 2.5544 -4.6657 43 1 11.2552 1.5073 -3.7705 44 1 9.6091 1.7787 -3.1501 45 1 12.5189 0.3814 -8.1745 46 1 8.2987 -1.2536 -2.9079 47 1 8.5188 0.4808 -2.5271 48 1 1.7654 -0.1498 -2.1344 49 1 1.6033 -1.7151 -1.2972 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972498590.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:36 Heat of formation + Delta-G solvation = -45.302163 kcal Electronic energy + Delta-G solvation = -28554.974827 eV Core-core repulsion = 24710.615879 eV Total energy + Delta-G solvation = -3844.358948 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.17043 -40.45723 -39.06024 -38.77138 -36.69890 -34.76086 -33.85671 -32.85524 -31.83587 -29.91699 -28.28747 -28.03359 -27.20363 -25.73179 -24.15248 -23.26169 -23.17330 -21.16217 -21.00674 -20.19788 -19.10281 -18.33533 -18.08396 -17.83666 -17.13341 -16.95101 -16.41165 -16.12208 -15.52087 -15.41527 -15.21463 -15.11495 -15.02763 -14.67814 -14.62732 -14.40095 -14.15253 -14.02780 -13.79215 -13.55052 -13.40394 -13.08340 -13.04470 -12.80390 -12.64377 -12.48982 -12.41279 -12.25235 -12.12074 -12.03846 -11.78706 -11.57813 -11.54881 -11.37079 -11.32576 -10.75341 -10.29951 -9.92654 -9.74020 -8.57089 -8.15967 -5.90711 0.25366 1.11734 1.37844 1.42736 1.54108 2.00750 2.24665 2.41832 3.01757 3.09758 3.24723 3.73327 3.76338 3.82743 3.84834 3.92278 4.06811 4.14477 4.24893 4.30349 4.33919 4.39773 4.53908 4.59879 4.64804 4.70227 4.75024 4.76053 4.82948 4.84997 4.88026 4.89757 4.91461 5.04830 5.05747 5.07818 5.15984 5.19102 5.27092 5.28836 5.31516 5.39771 5.48795 5.94698 5.97733 6.16411 6.24497 6.52457 6.83009 6.98697 7.51975 8.01897 8.95578 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.031522 B = 0.002649 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.049824 B =10568.312122 C =10887.479800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 H 0.061 0.939 4 C -0.113 4.113 5 C -0.131 4.131 6 C 0.062 3.938 7 N -0.577 5.577 8 C 0.509 3.491 9 O -0.536 6.536 10 C 0.514 3.486 11 O -0.534 6.534 12 N -0.582 5.582 13 C 0.120 3.880 14 C -0.147 4.147 15 C 0.168 3.832 16 H 0.072 0.928 17 N -0.607 5.607 18 C 0.094 3.906 19 C -0.274 4.274 20 H 0.034 0.966 21 C -0.009 4.009 22 N -0.951 5.951 23 Si 0.964 3.036 24 H -0.274 1.274 25 H -0.312 1.312 26 H -0.242 1.242 27 C 0.097 3.903 28 C 0.109 3.891 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.124 0.876 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.016 0.984 43 H 0.040 0.960 44 H 0.069 0.931 45 H 0.265 0.735 46 H 0.069 0.931 47 H 0.082 0.918 48 H 0.082 0.918 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.873 2.245 18.102 30.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.122 4.122 3 H 0.080 0.920 4 C -0.150 4.150 5 C -0.169 4.169 6 C -0.059 4.059 7 N -0.310 5.310 8 C 0.292 3.708 9 O -0.414 6.414 10 C 0.299 3.701 11 O -0.414 6.414 12 N -0.314 5.314 13 C -0.002 4.002 14 C -0.187 4.187 15 C 0.059 3.941 16 H 0.090 0.910 17 N -0.330 5.330 18 C -0.049 4.049 19 C -0.404 4.404 20 H 0.052 0.948 21 C -0.207 4.207 22 N -0.593 5.593 23 Si 0.792 3.208 24 H -0.200 1.200 25 H -0.241 1.241 26 H -0.167 1.167 27 C -0.027 4.027 28 C -0.012 4.012 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.141 0.859 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.034 0.966 43 H 0.059 0.941 44 H 0.088 0.912 45 H 0.074 0.926 46 H 0.087 0.913 47 H 0.100 0.900 48 H 0.101 0.899 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -23.803 2.168 17.979 29.908 hybrid contribution 0.676 0.479 -0.570 1.005 sum -23.127 2.647 17.409 29.068 Atomic orbital electron populations 1.21732 0.92646 1.02854 1.02575 1.21392 0.97221 0.99274 0.94265 0.92018 1.21625 0.94475 1.01445 0.97472 1.21922 0.96685 1.00684 0.97577 1.22963 1.02783 0.97427 0.82702 1.48072 1.07428 1.57952 1.17529 1.19865 0.87174 0.80282 0.83512 1.90728 1.74979 1.40229 1.35444 1.20042 0.87692 0.80886 0.81514 1.90466 1.76104 1.38861 1.35956 1.48363 1.08500 1.46223 1.28327 1.22171 0.96610 0.93806 0.87648 1.23214 0.94621 1.00067 1.00753 1.21635 0.83733 0.96230 0.92466 0.90967 1.43848 1.06432 1.33589 1.49160 1.21597 0.98908 0.89275 0.95159 1.18494 1.20950 0.92166 1.08772 0.94840 1.26536 0.97187 1.03320 0.93681 1.69933 1.32911 1.37775 1.18699 0.85686 0.79834 0.80190 0.75112 1.19968 1.24052 1.16651 1.22815 0.78177 1.02155 0.99582 1.21907 0.77179 1.02151 0.99999 0.91294 0.92479 0.91497 0.90678 0.90280 0.88862 0.92657 0.90366 0.85888 0.90147 0.89968 0.90351 0.89777 0.96650 0.94092 0.91222 0.92571 0.91252 0.90028 0.89932 0.89532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.20 71.98 0.66 -0.58 16 2 C -0.10 -1.29 2.86 -10.86 -0.03 -1.32 16 3 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 4 C -0.11 -1.19 5.17 30.62 0.16 -1.03 16 5 C -0.13 -1.79 6.08 30.67 0.19 -1.61 16 6 C 0.06 1.17 6.03 86.36 0.52 1.69 16 7 N -0.58 -12.52 2.98 -821.32 -2.45 -14.96 16 8 C 0.51 13.96 7.69 87.27 0.67 14.63 16 9 O -0.54 -16.13 13.60 -3.26 -0.04 -16.18 16 10 C 0.51 15.57 7.78 87.27 0.68 16.24 16 11 O -0.53 -17.24 13.40 -3.24 -0.04 -17.28 16 12 N -0.58 -17.84 3.33 -813.23 -2.70 -20.55 16 13 C 0.12 3.38 5.50 86.74 0.48 3.86 16 14 C -0.15 -4.61 6.53 31.80 0.21 -4.40 16 15 C 0.17 6.32 3.54 46.39 0.16 6.49 16 16 H 0.07 2.97 7.96 -2.39 -0.02 2.95 16 17 N -0.61 -27.21 2.43 -694.98 -1.69 -28.90 16 18 C 0.09 3.66 7.55 127.77 0.96 4.63 16 19 C -0.27 -15.20 9.84 84.03 0.83 -14.38 16 20 H 0.03 2.11 8.06 -2.91 -0.02 2.09 16 21 C -0.01 -0.53 5.50 84.86 0.47 -0.07 16 22 N -0.95 -58.65 13.97 21.65 0.30 -58.35 16 23 Si 0.96 44.90 24.89 68.60 1.71 46.61 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 25 H -0.31 -14.86 7.11 99.48 0.71 -14.16 16 26 H -0.24 -10.32 6.32 99.48 0.63 -9.69 16 27 C 0.10 3.22 6.45 86.86 0.56 3.78 16 28 C 0.11 1.82 5.70 86.22 0.49 2.31 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.48 8.14 -2.39 -0.02 0.47 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.12 2.96 4.22 -54.98 -0.23 2.73 16 38 H 0.08 2.28 7.43 -2.39 -0.02 2.26 16 39 H 0.08 2.15 7.86 -2.38 -0.02 2.13 16 40 H 0.08 2.41 7.21 -2.39 -0.02 2.39 16 41 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 42 H 0.02 0.61 4.24 -2.38 -0.01 0.60 16 43 H 0.04 1.66 8.05 -2.39 -0.02 1.64 16 44 H 0.07 2.23 6.15 -2.39 -0.01 2.21 16 45 H 0.27 15.47 8.31 -92.70 -0.77 14.70 16 46 H 0.07 2.47 8.04 -2.39 -0.02 2.45 16 47 H 0.08 2.61 6.13 -2.39 -0.01 2.60 16 48 H 0.08 1.60 7.00 -2.39 -0.02 1.58 16 49 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -66.48 370.79 2.72 -63.76 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.64 Total: 15.61 kcal Atomic # 6 Polarization: 23.23 SS G_CDS: 7.01 Total: 30.24 kcal Atomic # 7 Polarization: -116.22 SS G_CDS: -6.54 Total: -122.76 kcal Atomic # 8 Polarization: -33.37 SS G_CDS: -0.09 Total: -33.46 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.71 Total: 46.61 kcal Total: -66.48 2.72 -63.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972498590.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.460 kcal (2) G-P(sol) polarization free energy of solvation -66.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds