Wall clock time and date at job start Fri Apr 10 2020 18:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.47487 * 2 1 4 4 O 1.21279 * 119.99801 * 359.97438 * 3 2 1 5 5 N 1.34770 * 120.00157 * 179.97438 * 3 2 1 6 6 C 1.47426 * 125.65111 * 359.97347 * 5 3 2 7 7 C 1.54908 * 104.83670 * 155.91570 * 6 5 3 8 8 C 1.55156 * 101.57829 * 37.01105 * 7 6 5 9 9 H 1.08996 * 110.72314 * 83.03629 * 8 7 6 10 10 C 1.50702 * 110.71924 * 206.13499 * 8 7 6 11 11 O 1.21281 * 119.99848 * 118.54512 * 10 8 7 12 12 N 1.34779 * 120.00028 * 298.54339 * 10 8 7 13 13 C 1.47024 * 125.64550 * 0.02705 * 12 10 8 14 14 C 1.54318 * 107.40143 * 181.09859 * 13 12 10 15 15 C 1.55160 * 102.94328 * 22.11521 * 14 13 12 16 16 H 1.09004 * 111.00466 * 82.56844 * 15 14 13 17 17 N 1.46497 * 111.00671 * 206.42459 * 15 14 13 18 18 C 1.46492 * 120.00114 * 58.54807 * 17 15 14 19 19 C 1.36942 * 119.99680 * 238.54662 * 17 15 14 20 20 H 1.07992 * 120.00336 * 23.79856 * 19 17 15 21 21 C 1.38811 * 119.99680 * 203.80414 * 19 17 15 22 22 N 1.31621 * 120.00114 * 10.98103 * 21 19 17 23 23 Si 1.86801 * 119.99879 * 190.98958 * 21 19 17 24 24 H 1.48493 * 109.47292 * 89.99524 * 23 21 19 25 25 H 1.48506 * 109.46878 * 209.99920 * 23 21 19 26 26 H 1.48496 * 109.46916 * 329.99225 * 23 21 19 27 27 C 1.47738 * 125.82442 * 179.97438 * 12 10 8 28 28 C 1.47021 * 125.64737 * 180.02562 * 5 3 2 29 29 H 1.09005 * 109.46645 * 59.99957 * 1 2 3 30 30 H 1.08996 * 109.47348 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46950 * 300.00542 * 1 2 3 32 32 H 1.08999 * 109.46950 * 239.99458 * 2 1 3 33 33 H 1.09006 * 109.46820 * 119.99519 * 2 1 3 34 34 H 1.09006 * 110.36362 * 37.07647 * 6 5 3 35 35 H 1.09005 * 110.46094 * 274.80897 * 6 5 3 36 36 H 1.08992 * 111.00308 * 278.93535 * 7 6 5 37 37 H 1.08999 * 111.03449 * 155.09483 * 7 6 5 38 38 H 1.09000 * 109.88327 * 61.60714 * 13 12 10 39 39 H 1.09004 * 109.88140 * 300.59574 * 13 12 10 40 40 H 1.09001 * 110.72222 * 140.47458 * 14 13 12 41 41 H 1.08999 * 110.72409 * 263.75569 * 14 13 12 42 42 H 1.08998 * 109.47361 * 94.82204 * 18 17 15 43 43 H 1.09002 * 109.47412 * 214.82376 * 18 17 15 44 44 H 1.09006 * 109.47177 * 334.81934 * 18 17 15 45 45 H 0.97006 * 120.00067 * 180.02562 * 22 21 19 46 46 H 1.09002 * 110.29334 * 37.02223 * 27 12 10 47 47 H 1.09011 * 110.52554 * 274.76103 * 27 12 10 48 48 H 1.08994 * 109.88383 * 61.59800 * 28 5 3 49 49 H 1.09000 * 109.88477 * 300.42497 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 8 1.2444 2.3426 -0.0005 5 7 3.3575 1.6670 0.0005 6 6 4.4211 0.6462 0.0017 7 6 5.6542 1.3575 -0.6092 8 6 5.5103 2.7874 -0.0245 9 1 5.9259 2.8362 0.9820 10 6 6.1731 3.7999 -0.9226 11 8 5.5149 4.6833 -1.4300 12 7 7.4972 3.7238 -1.1620 13 6 8.4099 2.7092 -0.6149 14 6 9.8260 3.0336 -1.1355 15 6 9.7286 4.5406 -1.4915 16 1 9.8676 5.1610 -0.6061 17 7 10.6920 4.8967 -2.5361 18 6 10.6470 4.2211 -3.8352 19 6 11.6345 5.8613 -2.2983 20 1 11.9338 6.0857 -1.2852 21 6 12.2053 6.5506 -3.3594 22 7 11.6956 6.4379 -4.5677 23 14 13.6969 7.6379 -3.0726 24 1 14.9347 6.8371 -3.2506 25 1 13.6875 8.7582 -4.0473 26 1 13.6541 8.1828 -1.6919 27 6 8.2756 4.6431 -2.0175 28 6 3.9816 2.9982 0.0011 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 4.1306 -0.2051 -0.6141 35 1 4.6363 0.3212 1.0197 36 1 5.5970 1.3728 -1.6975 37 1 6.5807 0.8903 -0.2752 38 1 8.1084 1.7181 -0.9538 39 1 8.3974 2.7481 0.4744 40 1 10.5704 2.8687 -0.3565 41 1 10.0560 2.4421 -2.0217 42 1 10.0592 4.8162 -4.5341 43 1 11.6603 4.1050 -4.2197 44 1 10.1880 3.2393 -3.7184 45 1 12.0947 6.9193 -5.3093 46 1 7.9048 5.6627 -1.9121 47 1 8.2268 4.3284 -3.0600 48 1 3.6973 3.5405 0.9028 49 1 3.6693 3.5545 -0.8827 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972681062.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:42 Heat of formation + Delta-G solvation = -63.984250 kcal Electronic energy + Delta-G solvation = -27963.569788 eV Core-core repulsion = 24118.400723 eV Total energy + Delta-G solvation = -3845.169064 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.69137 -40.67456 -39.12746 -38.05811 -36.57545 -33.98263 -33.57057 -32.63198 -31.18920 -30.16371 -29.41727 -28.07112 -26.58501 -25.19995 -24.01599 -23.69758 -22.51812 -20.93554 -20.16059 -20.07810 -18.94408 -18.59922 -18.18965 -17.49170 -17.04397 -16.59131 -16.50275 -16.10053 -15.90350 -15.36552 -15.03824 -14.81461 -14.61300 -14.45125 -14.32517 -14.06524 -13.85429 -13.77909 -13.44987 -13.28096 -13.14595 -13.07210 -12.87323 -12.78212 -12.59011 -12.47932 -12.38951 -12.31741 -12.16891 -12.06016 -12.03326 -11.85737 -11.80282 -11.35658 -10.95567 -10.90978 -10.65218 -9.72951 -9.65870 -8.79042 -7.84462 -5.35630 1.47147 1.47812 1.53518 1.56739 1.60167 1.72674 2.11588 2.50579 3.23475 3.27990 3.37888 3.57023 3.62961 3.76730 3.95049 4.01524 4.16219 4.21489 4.21930 4.23755 4.26902 4.33067 4.38609 4.48807 4.60950 4.67842 4.74368 4.79141 4.80916 4.85329 4.86951 4.97155 4.99661 5.05327 5.06547 5.12972 5.21260 5.22874 5.26569 5.34436 5.37079 5.46863 5.64330 5.72323 6.31228 6.47852 6.56540 7.07815 7.12742 7.13554 7.83740 8.27343 9.17954 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.036167 B = 0.002249 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.001499 B =12449.281382 C =12687.358395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.512 3.488 4 O -0.599 6.599 5 N -0.622 5.622 6 C 0.099 3.901 7 C -0.120 4.120 8 C -0.102 4.102 9 H 0.147 0.853 10 C 0.527 3.473 11 O -0.599 6.599 12 N -0.607 5.607 13 C 0.102 3.898 14 C -0.140 4.140 15 C 0.164 3.836 16 H 0.072 0.928 17 N -0.602 5.602 18 C 0.178 3.822 19 C -0.264 4.264 20 H 0.077 0.923 21 C -0.055 4.055 22 N -0.939 5.939 23 Si 0.971 3.029 24 H -0.282 1.282 25 H -0.300 1.300 26 H -0.267 1.267 27 C 0.096 3.904 28 C 0.119 3.881 29 H 0.039 0.961 30 H 0.090 0.910 31 H 0.045 0.955 32 H 0.118 0.882 33 H 0.126 0.874 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.066 0.934 37 H 0.136 0.864 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.073 0.927 42 H -0.004 1.004 43 H 0.018 0.982 44 H 0.037 0.963 45 H 0.248 0.752 46 H 0.035 0.965 47 H 0.048 0.952 48 H 0.064 0.936 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.022 -22.490 13.868 29.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.303 3.697 4 O -0.480 6.480 5 N -0.356 5.356 6 C -0.022 4.022 7 C -0.158 4.158 8 C -0.123 4.123 9 H 0.165 0.835 10 C 0.317 3.683 11 O -0.480 6.480 12 N -0.340 5.340 13 C -0.019 4.019 14 C -0.180 4.180 15 C 0.055 3.945 16 H 0.091 0.909 17 N -0.323 5.323 18 C 0.034 3.966 19 C -0.394 4.394 20 H 0.094 0.906 21 C -0.250 4.250 22 N -0.586 5.586 23 Si 0.800 3.200 24 H -0.209 1.209 25 H -0.227 1.227 26 H -0.192 1.192 27 C -0.029 4.029 28 C -0.005 4.005 29 H 0.058 0.942 30 H 0.109 0.891 31 H 0.064 0.936 32 H 0.136 0.864 33 H 0.144 0.856 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.085 0.915 37 H 0.154 0.846 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.091 0.909 42 H 0.014 0.986 43 H 0.037 0.963 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.054 0.946 47 H 0.066 0.934 48 H 0.083 0.917 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -12.851 -21.504 13.470 28.444 hybrid contribution 0.657 1.924 -0.847 2.202 sum -12.194 -19.580 12.624 26.295 Atomic orbital electron populations 1.21565 0.93759 1.02794 1.01593 1.21690 0.97798 0.90347 1.06877 1.21498 0.80096 0.93419 0.74699 1.90699 1.55935 1.48923 1.52440 1.48719 1.05933 1.08079 1.72832 1.22745 0.84676 0.91003 1.03799 1.23005 1.00979 0.90959 1.00833 1.22240 0.93536 0.95393 1.01158 0.83500 1.20687 0.80476 0.85685 0.81487 1.90713 1.63969 1.38973 1.54357 1.48565 1.06799 1.30849 1.47791 1.22450 0.87658 0.91743 1.00086 1.23083 0.96464 0.96120 1.02288 1.21631 0.85520 0.95995 0.91310 0.90943 1.44043 1.33612 1.42549 1.12081 1.20493 0.98114 0.92125 0.85914 1.19595 1.14125 1.12515 0.93189 0.90571 1.25893 1.02875 1.00147 0.96050 1.70245 1.41923 1.46124 1.00275 0.85202 0.79522 0.77932 0.77389 1.20900 1.22711 1.19181 1.22718 0.93582 0.92506 0.94121 1.21581 0.91574 0.85791 1.01552 0.94188 0.89082 0.93622 0.86411 0.85637 0.87340 0.87257 0.91533 0.84579 0.87898 0.88060 0.88453 0.90872 0.98568 0.96277 0.94428 0.94319 0.94622 0.93367 0.91739 0.93861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.20 71.98 0.66 -1.17 16 2 C -0.13 -1.33 5.43 29.85 0.16 -1.17 16 3 C 0.51 11.03 7.85 87.66 0.69 11.72 16 4 O -0.60 -19.76 16.31 -3.03 -0.05 -19.81 16 5 N -0.62 -11.25 3.33 -811.78 -2.70 -13.95 16 6 C 0.10 0.67 6.69 86.85 0.58 1.26 16 7 C -0.12 -1.15 5.45 31.99 0.17 -0.97 16 8 C -0.10 -1.78 2.83 -10.35 -0.03 -1.81 16 9 H 0.15 1.61 8.14 -2.39 -0.02 1.59 16 10 C 0.53 15.46 7.22 87.66 0.63 16.09 16 11 O -0.60 -24.73 15.74 -3.03 -0.05 -24.78 16 12 N -0.61 -16.92 3.34 -811.04 -2.71 -19.62 16 13 C 0.10 1.77 5.94 86.73 0.51 2.29 16 14 C -0.14 -3.47 6.50 31.78 0.21 -3.26 16 15 C 0.16 6.07 3.53 46.37 0.16 6.23 16 16 H 0.07 2.73 7.96 -2.39 -0.02 2.71 16 17 N -0.60 -28.59 2.96 -695.10 -2.06 -30.65 16 18 C 0.18 8.47 7.58 127.77 0.97 9.44 16 19 C -0.26 -13.99 9.61 84.03 0.81 -13.18 16 20 H 0.08 3.86 7.85 -2.91 -0.02 3.83 16 21 C -0.05 -3.01 5.14 84.86 0.44 -2.57 16 22 N -0.94 -55.54 10.65 21.65 0.23 -55.31 16 23 Si 0.97 44.48 29.57 68.60 2.03 46.50 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 25 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 27 C 0.10 3.66 6.49 86.78 0.56 4.22 16 28 C 0.12 2.85 6.26 86.73 0.54 3.39 16 29 H 0.04 0.69 8.10 -2.38 -0.02 0.67 16 30 H 0.09 0.64 8.14 -2.39 -0.02 0.63 16 31 H 0.04 0.74 8.10 -2.39 -0.02 0.72 16 32 H 0.12 0.68 7.85 -2.39 -0.02 0.66 16 33 H 0.13 0.52 8.14 -2.38 -0.02 0.50 16 34 H 0.11 0.24 7.48 -2.38 -0.02 0.23 16 35 H 0.11 0.14 8.14 -2.38 -0.02 0.12 16 36 H 0.07 0.92 8.04 -2.39 -0.02 0.90 16 37 H 0.14 0.30 6.47 -2.39 -0.02 0.29 16 38 H 0.10 1.10 6.07 -2.39 -0.01 1.09 16 39 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.07 1.91 6.36 -2.39 -0.02 1.90 16 42 H 0.00 -0.22 7.35 -2.39 -0.02 -0.24 16 43 H 0.02 0.97 7.32 -2.39 -0.02 0.95 16 44 H 0.04 1.47 6.34 -2.38 -0.02 1.45 16 45 H 0.25 14.31 8.31 -92.70 -0.77 13.54 16 46 H 0.04 1.58 8.05 -2.39 -0.02 1.56 16 47 H 0.05 2.01 7.06 -2.38 -0.02 2.00 16 48 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.04 1.44 6.88 -2.39 -0.02 1.43 16 Total: -1.00 -84.67 381.49 2.71 -81.96 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: 0.93 Total: 5.13 kcal Atomic # 6 Polarization: 23.43 SS G_CDS: 7.08 Total: 30.51 kcal Atomic # 7 Polarization: -112.29 SS G_CDS: -7.23 Total: -119.52 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -0.10 Total: -44.58 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -84.67 2.71 -81.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972681062.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.980 kcal (2) G-P(sol) polarization free energy of solvation -84.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds