Wall clock time and date at job start Fri Apr 10 2020 18:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50704 * 109.47198 * 2 1 4 4 O 1.21277 * 120.00183 * 0.27254 * 3 2 1 5 5 N 1.34778 * 119.99670 * 180.02562 * 3 2 1 6 6 C 1.47020 * 125.65204 * 0.02562 * 5 3 2 7 7 C 1.54329 * 107.27219 * 181.02531 * 6 5 3 8 8 C 1.55157 * 102.93939 * 22.19288 * 7 6 5 9 9 H 1.08994 * 111.00448 * 82.61464 * 8 7 6 10 10 C 1.50705 * 110.99940 * 206.42494 * 8 7 6 11 11 O 1.21287 * 119.99939 * 118.55262 * 10 8 7 12 12 N 1.34774 * 120.00092 * 298.54549 * 10 8 7 13 13 C 1.47430 * 125.64767 * 0.02603 * 12 10 8 14 14 C 1.54903 * 104.82911 * 204.09254 * 13 12 10 15 15 C 1.55153 * 101.58880 * 322.99042 * 14 13 12 16 16 H 1.08999 * 110.72312 * 277.14734 * 15 14 13 17 17 N 1.46495 * 110.72449 * 154.04091 * 15 14 13 18 18 C 1.46494 * 120.00266 * 301.45871 * 17 15 14 19 19 C 1.36936 * 119.99650 * 121.45529 * 17 15 14 20 20 H 1.08004 * 120.00505 * 21.93528 * 19 17 15 21 21 C 1.38813 * 119.99996 * 201.93119 * 19 17 15 22 22 N 1.31620 * 119.99956 * 11.02154 * 21 19 17 23 23 Si 1.86800 * 120.00153 * 191.01131 * 21 19 17 24 24 H 1.48509 * 109.46802 * 90.00417 * 23 21 19 25 25 H 1.48497 * 109.47289 * 210.00267 * 23 21 19 26 26 H 1.48496 * 109.47348 * 330.00535 * 23 21 19 27 27 C 1.47020 * 125.65054 * 179.72326 * 12 10 8 28 28 C 1.47425 * 125.64470 * 179.71487 * 5 3 2 29 29 H 1.09003 * 109.47236 * 60.00088 * 1 2 3 30 30 H 1.08998 * 109.47426 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47456 * 300.00507 * 1 2 3 32 32 H 1.08999 * 109.47418 * 239.99947 * 2 1 3 33 33 H 1.09003 * 109.47236 * 119.99912 * 2 1 3 34 34 H 1.08996 * 109.88191 * 300.43915 * 6 5 3 35 35 H 1.09007 * 109.88044 * 61.45298 * 6 5 3 36 36 H 1.08997 * 110.72012 * 140.55812 * 7 6 5 37 37 H 1.08999 * 110.71758 * 263.65225 * 7 6 5 38 38 H 1.08998 * 110.36560 * 322.93230 * 13 12 10 39 39 H 1.08998 * 110.36604 * 85.14184 * 13 12 10 40 40 H 1.08996 * 111.00857 * 81.07045 * 14 13 12 41 41 H 1.09002 * 111.00173 * 204.91549 * 14 13 12 42 42 H 1.09006 * 109.47234 * 95.06269 * 18 17 15 43 43 H 1.08997 * 109.47395 * 215.06228 * 18 17 15 44 44 H 1.09000 * 109.47100 * 335.06531 * 18 17 15 45 45 H 0.97003 * 120.00202 * 179.97438 * 22 21 19 46 46 H 1.09006 * 109.87853 * 298.39695 * 27 12 10 47 47 H 1.08997 * 109.88597 * 59.55624 * 27 12 10 48 48 H 1.09006 * 110.36875 * 274.74477 * 28 5 3 49 49 H 1.08996 * 110.37049 * 37.06515 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2443 2.3427 0.0050 5 7 3.3574 1.6670 -0.0005 6 6 4.4181 0.6490 -0.0017 7 6 5.7690 1.3948 0.0245 8 6 5.3895 2.7806 0.6099 9 1 5.3423 2.7453 1.6983 10 6 6.3524 3.8440 0.1482 11 8 5.9516 4.7805 -0.5102 12 7 7.6589 3.7545 0.4669 13 6 8.2785 2.6751 1.2572 14 6 9.5602 3.3070 1.8549 15 6 10.0307 4.2181 0.6906 16 1 10.5985 3.6451 -0.0424 17 7 10.8257 5.3390 1.1982 18 6 10.2447 6.2682 2.1703 19 6 12.1120 5.5181 0.7639 20 1 12.4299 5.0885 -0.1746 21 6 13.0073 6.2519 1.5299 22 7 12.6952 6.5905 2.7630 23 14 14.6552 6.7588 0.8109 24 1 14.5208 8.0816 0.1494 25 1 15.6629 6.8491 1.8979 26 1 15.0919 5.7488 -0.1863 27 6 8.7032 4.7138 0.0789 28 6 3.9832 3.0018 -0.0065 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.3264 0.0172 0.8817 35 1 4.3459 0.0394 -0.9025 36 1 6.4794 0.8832 0.6738 37 1 6.1731 1.4961 -0.9828 38 1 7.6068 2.3543 2.0534 39 1 8.5331 1.8325 0.6143 40 1 9.3284 3.8956 2.7425 41 1 10.3048 2.5429 2.0784 42 1 10.5186 5.9574 3.1786 43 1 10.6240 7.2730 1.9842 44 1 9.1592 6.2655 2.0717 45 1 13.3210 7.1029 3.2984 46 1 8.7851 4.7533 -1.0073 47 1 8.4629 5.7021 0.4708 48 1 4.0683 3.3764 -1.0267 49 1 3.4058 3.6944 0.6058 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972681063.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:45 Heat of formation + Delta-G solvation = -63.015374 kcal Electronic energy + Delta-G solvation = -27937.300154 eV Core-core repulsion = 24092.173103 eV Total energy + Delta-G solvation = -3845.127051 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.66877 -40.69359 -39.12638 -38.06052 -36.56792 -33.97217 -33.53804 -32.61312 -31.21857 -30.17269 -29.39905 -28.09219 -26.58597 -25.18483 -23.99673 -23.63018 -22.60818 -20.87797 -20.25087 -20.04854 -18.95862 -18.45964 -18.25583 -17.45463 -17.08291 -16.67751 -16.42591 -16.25811 -15.62180 -15.34102 -15.01205 -14.92474 -14.57765 -14.51385 -14.33800 -14.12252 -13.88177 -13.79176 -13.42771 -13.16148 -13.11271 -12.99485 -12.86179 -12.78031 -12.58012 -12.54922 -12.38373 -12.25909 -12.22696 -12.05542 -12.04075 -11.84398 -11.78573 -11.45427 -10.96744 -10.90200 -10.64492 -9.72580 -9.64532 -8.82603 -7.83533 -5.31971 1.47464 1.49723 1.53619 1.57417 1.59249 1.73234 2.13548 2.51360 3.20972 3.29415 3.37294 3.58098 3.68571 3.76975 3.86245 4.00872 4.14122 4.21243 4.24040 4.26265 4.30660 4.31882 4.37918 4.49525 4.58524 4.67577 4.71977 4.76865 4.79400 4.84699 4.93682 4.97235 5.01545 5.03305 5.06344 5.12422 5.18159 5.24074 5.29075 5.36498 5.37833 5.43011 5.63765 5.70184 6.30850 6.47900 6.55232 7.07286 7.12514 7.13755 7.83946 8.28130 9.20073 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.041162 B = 0.002199 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.078919 B =12727.523124 C =12923.115394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.514 3.486 4 O -0.597 6.597 5 N -0.622 5.622 6 C 0.099 3.901 7 C -0.116 4.116 8 C -0.107 4.107 9 H 0.133 0.867 10 C 0.532 3.468 11 O -0.594 6.594 12 N -0.606 5.606 13 C 0.106 3.894 14 C -0.144 4.144 15 C 0.166 3.834 16 H 0.085 0.915 17 N -0.604 5.604 18 C 0.183 3.817 19 C -0.263 4.263 20 H 0.077 0.923 21 C -0.053 4.053 22 N -0.938 5.938 23 Si 0.969 3.031 24 H -0.292 1.292 25 H -0.295 1.295 26 H -0.264 1.264 27 C 0.096 3.904 28 C 0.126 3.874 29 H 0.041 0.959 30 H 0.089 0.911 31 H 0.043 0.957 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.129 0.871 37 H 0.077 0.923 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.054 0.946 41 H 0.091 0.909 42 H 0.011 0.989 43 H 0.012 0.988 44 H 0.018 0.982 45 H 0.247 0.753 46 H 0.055 0.945 47 H 0.041 0.959 48 H 0.055 0.945 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.468 -22.250 -2.939 27.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.305 3.695 4 O -0.478 6.478 5 N -0.355 5.355 6 C -0.023 4.023 7 C -0.153 4.153 8 C -0.128 4.128 9 H 0.151 0.849 10 C 0.321 3.679 11 O -0.475 6.475 12 N -0.339 5.339 13 C -0.015 4.015 14 C -0.184 4.184 15 C 0.057 3.943 16 H 0.104 0.896 17 N -0.326 5.326 18 C 0.038 3.962 19 C -0.393 4.393 20 H 0.095 0.905 21 C -0.248 4.248 22 N -0.585 5.585 23 Si 0.798 3.202 24 H -0.220 1.220 25 H -0.222 1.222 26 H -0.189 1.189 27 C -0.029 4.029 28 C 0.002 3.998 29 H 0.060 0.940 30 H 0.108 0.892 31 H 0.063 0.937 32 H 0.137 0.863 33 H 0.141 0.859 34 H 0.126 0.874 35 H 0.114 0.886 36 H 0.147 0.853 37 H 0.096 0.904 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.073 0.927 41 H 0.110 0.890 42 H 0.029 0.971 43 H 0.030 0.970 44 H 0.036 0.964 45 H 0.057 0.943 46 H 0.073 0.927 47 H 0.059 0.941 48 H 0.074 0.926 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.125 -21.220 -3.187 27.454 hybrid contribution 1.060 1.679 -0.182 1.994 sum -16.065 -19.541 -3.369 25.520 Atomic orbital electron populations 1.21563 0.93744 1.02765 1.01636 1.21685 0.97784 0.90398 1.06869 1.21456 0.80014 0.93391 0.74600 1.90700 1.55801 1.48859 1.52438 1.48699 1.05880 1.08015 1.72939 1.22402 0.84359 0.90513 1.04982 1.22822 0.97980 0.91401 1.03144 1.22366 0.91963 0.95151 1.03358 0.84906 1.20518 0.81578 0.86675 0.79107 1.90710 1.77833 1.36704 1.42278 1.48504 1.06174 1.26173 1.53041 1.22663 0.93973 0.89482 0.95384 1.23234 0.97277 0.99527 0.98401 1.21485 0.89316 0.88244 0.95209 0.89646 1.44035 1.11017 1.27993 1.49530 1.20433 0.91661 0.92166 0.91964 1.19595 0.87286 1.30611 1.01769 0.90517 1.25774 1.01330 1.02061 0.95648 1.70231 1.36903 1.42948 1.08429 0.85228 0.79562 0.78177 0.77229 1.21954 1.22204 1.18864 1.22393 0.88813 0.92751 0.98947 1.21803 0.91828 0.85729 1.00476 0.93960 0.89188 0.93739 0.86304 0.85863 0.87413 0.88644 0.85259 0.90389 0.87664 0.87703 0.92743 0.89045 0.97093 0.96954 0.96356 0.94323 0.92696 0.94072 0.92635 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.20 71.98 0.66 -1.04 16 2 C -0.13 -1.23 5.61 29.85 0.17 -1.06 16 3 C 0.51 10.44 7.85 87.66 0.69 11.13 16 4 O -0.60 -18.73 16.23 -3.02 -0.05 -18.78 16 5 N -0.62 -10.69 3.32 -811.33 -2.70 -13.38 16 6 C 0.10 0.68 6.48 86.73 0.56 1.24 16 7 C -0.12 -1.03 5.60 31.78 0.18 -0.85 16 8 C -0.11 -1.90 2.69 -10.07 -0.03 -1.93 16 9 H 0.13 1.86 7.99 -2.39 -0.02 1.84 16 10 C 0.53 14.91 7.22 87.66 0.63 15.54 16 11 O -0.59 -22.95 16.13 -3.05 -0.05 -23.00 16 12 N -0.61 -16.28 3.33 -811.76 -2.70 -18.98 16 13 C 0.11 1.95 5.30 86.85 0.46 2.41 16 14 C -0.14 -4.04 6.65 31.98 0.21 -3.83 16 15 C 0.17 5.99 3.42 46.18 0.16 6.15 16 16 H 0.09 2.96 7.92 -2.39 -0.02 2.94 16 17 N -0.60 -28.88 2.94 -696.15 -2.05 -30.92 16 18 C 0.18 9.03 7.67 127.77 0.98 10.01 16 19 C -0.26 -13.81 9.63 84.03 0.81 -13.00 16 20 H 0.08 3.85 7.82 -2.91 -0.02 3.83 16 21 C -0.05 -2.90 5.14 84.86 0.44 -2.46 16 22 N -0.94 -54.43 10.54 21.65 0.23 -54.20 16 23 Si 0.97 44.12 29.57 68.60 2.03 46.15 16 24 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 25 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 26 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 27 C 0.10 3.36 6.41 86.73 0.56 3.92 16 28 C 0.13 2.94 5.97 86.93 0.52 3.46 16 29 H 0.04 0.67 8.10 -2.39 -0.02 0.65 16 30 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.04 0.69 8.10 -2.38 -0.02 0.67 16 32 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 35 H 0.10 0.33 8.14 -2.38 -0.02 0.31 16 36 H 0.13 0.33 6.98 -2.39 -0.02 0.31 16 37 H 0.08 0.86 8.04 -2.39 -0.02 0.84 16 38 H 0.11 1.27 7.45 -2.39 -0.02 1.25 16 39 H 0.10 1.27 7.87 -2.39 -0.02 1.25 16 40 H 0.05 1.78 7.28 -2.39 -0.02 1.76 16 41 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.01 0.58 7.38 -2.38 -0.02 0.56 16 43 H 0.01 0.65 7.21 -2.39 -0.02 0.63 16 44 H 0.02 0.81 6.30 -2.39 -0.02 0.80 16 45 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 46 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 47 H 0.04 1.70 6.15 -2.39 -0.01 1.69 16 48 H 0.06 1.58 7.53 -2.38 -0.02 1.57 16 49 H 0.06 1.63 8.03 -2.39 -0.02 1.61 16 Total: -1.00 -80.44 383.68 2.63 -77.80 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: 0.92 Total: 5.63 kcal Atomic # 6 Polarization: 22.69 SS G_CDS: 7.00 Total: 29.68 kcal Atomic # 7 Polarization: -110.27 SS G_CDS: -7.22 Total: -117.49 kcal Atomic # 8 Polarization: -41.68 SS G_CDS: -0.10 Total: -41.78 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -80.44 2.63 -77.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972681063.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.789 kcal (2) G-P(sol) polarization free energy of solvation -80.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds