Wall clock time and date at job start Fri Apr 10 2020 18:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.66912 * 2 1 4 4 C 1.53068 * 109.70685 * 120.52050 * 2 1 3 5 5 C 1.50162 * 109.94904 * 168.44023 * 4 2 1 6 6 O 1.21284 * 118.23141 * 162.62307 * 5 4 2 7 7 N 1.33353 * 123.52069 * 342.90665 * 5 4 2 8 8 C 1.45749 * 124.10698 * 1.66189 * 7 5 4 9 9 H 1.08999 * 109.30354 * 101.31342 * 8 7 5 10 10 C 1.50699 * 109.30020 * 220.89828 * 8 7 5 11 11 O 1.21280 * 120.00522 * 19.99950 * 10 8 7 12 12 N 1.34780 * 120.00199 * 200.00082 * 10 8 7 13 13 C 1.46499 * 120.00380 * 180.02562 * 12 10 8 14 14 H 1.08996 * 110.88480 * 37.41819 * 13 12 10 15 15 C 1.54911 * 110.99888 * 273.54143 * 13 12 10 16 16 N 1.47416 * 104.83488 * 278.93469 * 15 13 12 17 17 C 1.36941 * 125.65001 * 155.83917 * 16 15 13 18 18 H 1.07999 * 119.99920 * 342.02543 * 17 16 15 19 19 C 1.38813 * 119.99871 * 162.03266 * 17 16 15 20 20 N 1.31624 * 119.99625 * 156.39967 * 19 17 16 21 21 Si 1.86799 * 120.00049 * 336.38841 * 19 17 16 22 22 H 1.48504 * 109.46686 * 84.69147 * 21 19 17 23 23 H 1.48496 * 109.47199 * 204.68758 * 21 19 17 24 24 H 1.48493 * 109.47248 * 324.69390 * 21 19 17 25 25 C 1.47027 * 108.70485 * 335.87073 * 16 15 13 26 26 C 1.54323 * 107.26685 * 1.05973 * 25 16 15 27 27 C 1.52995 * 110.71996 * 263.82721 * 26 25 16 28 28 C 1.53002 * 110.71708 * 140.55386 * 26 25 16 29 29 C 1.52927 * 110.49056 * 341.20471 * 8 7 5 30 30 H 1.09004 * 109.46676 * 180.49733 * 1 2 3 31 31 H 1.08996 * 109.47166 * 300.49285 * 1 2 3 32 32 H 1.08995 * 109.47239 * 60.49724 * 1 2 3 33 33 H 1.09000 * 109.39740 * 288.77758 * 4 2 1 34 34 H 1.08993 * 109.40351 * 48.52090 * 4 2 1 35 35 H 0.96998 * 117.94606 * 181.94258 * 7 5 4 36 36 H 0.96999 * 119.99956 * 359.97438 * 12 10 8 37 37 H 1.08999 * 110.36827 * 37.77581 * 15 13 12 38 38 H 1.09001 * 110.36496 * 159.98275 * 15 13 12 39 39 H 0.97006 * 119.99608 * 179.97438 * 20 19 17 40 40 H 1.09002 * 109.88175 * 120.47341 * 25 16 15 41 41 H 1.08994 * 109.88130 * 241.48736 * 25 16 15 42 42 H 1.08999 * 109.46999 * 173.52522 * 27 26 25 43 43 H 1.08998 * 109.47474 * 293.52247 * 27 26 25 44 44 H 1.08990 * 109.47111 * 53.52676 * 27 26 25 45 45 H 1.09000 * 109.47585 * 306.47673 * 28 26 25 46 46 H 1.08999 * 109.47253 * 66.48028 * 28 26 25 47 47 H 1.09005 * 109.47153 * 186.47836 * 28 26 25 48 48 H 1.08995 * 109.60413 * 170.51017 * 29 8 7 49 49 H 1.09000 * 109.60569 * 290.83759 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8969 1.0264 0.0000 4 6 2.0462 -0.7318 1.2414 5 6 3.5208 -0.9836 1.1115 6 8 4.1468 -1.2561 2.1140 7 7 4.1799 -0.9183 -0.0459 8 6 3.5642 -0.5625 -1.3181 9 1 3.7962 0.4763 -1.5527 10 6 4.1129 -1.4527 -2.4033 11 8 4.6383 -2.5071 -2.1149 12 7 4.0199 -1.0771 -3.6943 13 6 4.5529 -1.9426 -4.7493 14 1 4.3807 -2.9929 -4.5141 15 6 6.0586 -1.6662 -4.9864 16 7 6.0917 -0.4721 -5.8502 17 6 7.1335 0.4107 -5.9520 18 1 7.8925 0.4412 -5.1843 19 6 7.2141 1.2665 -7.0420 20 7 7.8924 2.3906 -6.9473 21 14 6.3601 0.8229 -8.6430 22 1 4.9401 1.2532 -8.5823 23 1 7.0375 1.5094 -9.7721 24 1 6.4237 -0.6466 -8.8472 25 6 4.8205 -0.3856 -6.5839 26 6 3.9476 -1.5744 -6.1296 27 6 4.0760 -2.7447 -7.1067 28 6 2.4856 -1.1475 -5.9831 29 6 2.0462 -0.7328 -1.2443 30 1 -0.3633 -1.0277 0.0089 31 1 -0.3633 0.5214 0.8855 32 1 -0.3633 0.5061 -0.8944 33 1 1.8567 -0.1230 2.1254 34 1 1.5272 -1.6850 1.3417 35 1 5.1278 -1.1243 -0.0415 36 1 3.5995 -0.2339 -3.9251 37 1 6.5607 -1.4640 -4.0403 38 1 6.5252 -2.5133 -5.4891 39 1 7.9489 2.9885 -7.7091 40 1 4.3196 0.5534 -6.3482 41 1 5.0064 -0.4475 -7.6561 42 1 3.5454 -3.6098 -6.7090 43 1 3.6452 -2.4646 -8.0679 44 1 5.1288 -2.9936 -7.2391 45 1 2.4248 -0.2779 -5.3287 46 1 2.0812 -0.8939 -6.9629 47 1 1.9092 -1.9667 -5.5531 48 1 1.5867 -0.3072 -2.1363 49 1 1.7999 -1.7924 -1.1761 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974594705.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:10 Heat of formation + Delta-G solvation = -52.976503 kcal Electronic energy + Delta-G solvation = -29165.579810 eV Core-core repulsion = 25320.888077 eV Total energy + Delta-G solvation = -3844.691733 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.99774 -39.81226 -38.34974 -36.82212 -34.26912 -34.08596 -33.26632 -31.49068 -30.35268 -28.52344 -28.17710 -27.09008 -26.01795 -25.05444 -23.42125 -21.81711 -20.99383 -20.10699 -19.51349 -19.22072 -17.74963 -17.22333 -16.91854 -16.61058 -15.81527 -15.55689 -15.25967 -14.95755 -14.63234 -14.30992 -14.17172 -13.84330 -13.72318 -13.65055 -13.29068 -13.02511 -12.87366 -12.76895 -12.49372 -12.35111 -12.14451 -12.06459 -11.79231 -11.67913 -11.56623 -11.30792 -11.25705 -11.15732 -10.94463 -10.83293 -10.55812 -10.33836 -10.17192 -9.87068 -9.80921 -9.39732 -9.16255 -8.99022 -8.61569 -7.11490 -6.00560 -3.29560 2.46717 2.48777 2.94041 3.27344 3.33070 3.42315 3.45464 4.21055 4.25731 4.27704 4.35608 4.48429 4.60090 4.74210 4.82282 4.85476 5.01003 5.03339 5.06924 5.15427 5.20940 5.29315 5.36329 5.38742 5.43855 5.44933 5.56467 5.59559 5.69444 5.73466 5.78570 5.86872 5.87596 5.96246 6.07636 6.14275 6.28206 6.29308 6.45534 6.53520 6.60334 6.64957 6.76982 7.16081 7.52371 7.65582 8.06109 8.20927 8.25378 8.77937 9.63203 10.10717 11.15840 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.016390 B = 0.003549 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.987923 B = 7887.724914 C = 8328.342662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 H 0.084 0.916 4 C -0.131 4.131 5 C 0.524 3.476 6 O -0.557 6.557 7 N -0.697 5.697 8 C 0.124 3.876 9 H 0.102 0.898 10 C 0.504 3.496 11 O -0.533 6.533 12 N -0.699 5.699 13 C 0.140 3.860 14 H 0.095 0.905 15 C 0.125 3.875 16 N -0.606 5.606 17 C -0.241 4.241 18 H 0.092 0.908 19 C 0.023 3.977 20 N -0.906 5.906 21 Si 0.886 3.114 22 H -0.287 1.287 23 H -0.305 1.305 24 H -0.279 1.279 25 C 0.127 3.873 26 C -0.086 4.086 27 C -0.133 4.133 28 C -0.133 4.133 29 C -0.122 4.122 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.407 0.593 36 H 0.403 0.597 37 H 0.052 0.948 38 H 0.034 0.966 39 H 0.263 0.737 40 H 0.039 0.961 41 H 0.030 0.970 42 H 0.055 0.945 43 H 0.058 0.942 44 H 0.063 0.937 45 H 0.055 0.945 46 H 0.058 0.942 47 H 0.057 0.943 48 H 0.093 0.907 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.689 -5.559 8.313 21.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.102 0.898 4 C -0.171 4.171 5 C 0.311 3.689 6 O -0.436 6.436 7 N -0.350 5.350 8 C 0.015 3.985 9 H 0.119 0.881 10 C 0.288 3.712 11 O -0.410 6.410 12 N -0.350 5.350 13 C 0.035 3.965 14 H 0.113 0.887 15 C -0.001 4.001 16 N -0.333 5.333 17 C -0.368 4.368 18 H 0.109 0.891 19 C -0.176 4.176 20 N -0.550 5.550 21 Si 0.718 3.282 22 H -0.215 1.215 23 H -0.233 1.233 24 H -0.206 1.206 25 C 0.002 3.998 26 C -0.087 4.087 27 C -0.190 4.190 28 C -0.190 4.190 29 C -0.160 4.160 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.244 0.756 36 H 0.239 0.761 37 H 0.070 0.930 38 H 0.052 0.948 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.047 0.953 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.111 0.889 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -18.069 -6.191 8.964 21.099 hybrid contribution -0.075 0.231 -1.451 1.471 sum -18.143 -5.960 7.512 20.522 Atomic orbital electron populations 1.21806 0.93692 1.02367 1.02451 1.21269 0.96825 0.99980 0.93251 0.89753 1.21757 0.91803 1.03366 1.00177 1.20116 0.90336 0.76005 0.82438 1.90772 1.68393 1.49234 1.35187 1.45229 1.13804 1.69827 1.06119 1.20894 0.94783 0.99183 0.83656 0.88068 1.20597 0.79776 0.87066 0.83758 1.90735 1.43871 1.23868 1.82487 1.45830 1.59882 1.24055 1.05227 1.22196 0.94944 0.94029 0.85357 0.88704 1.21991 0.92746 0.90199 0.95210 1.44748 1.13203 1.26125 1.49186 1.18641 1.02582 1.10450 1.05157 0.89064 1.24946 0.98404 0.96367 0.97869 1.69859 1.45131 1.09145 1.30824 0.86927 0.78163 0.77933 0.85159 1.21451 1.23315 1.20554 1.21794 0.87189 0.94982 0.95815 1.21862 0.95391 0.97033 0.94462 1.21733 1.02662 0.96453 0.98187 1.21735 0.94585 1.00862 1.01863 1.21950 0.91461 1.02759 0.99859 0.92286 0.92076 0.91928 0.87949 0.88108 0.75635 0.76149 0.92964 0.94791 0.92708 0.94276 0.95290 0.92581 0.92311 0.91768 0.92618 0.92247 0.92409 0.88894 0.90104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.20 37.16 0.34 -0.34 16 2 C -0.09 -0.59 2.80 -90.40 -0.25 -0.84 16 3 H 0.08 0.51 8.13 -51.93 -0.42 0.09 16 4 C -0.13 -1.07 5.36 -28.11 -0.15 -1.22 16 5 C 0.52 6.54 7.71 -11.88 -0.09 6.45 16 6 O -0.56 -9.33 17.78 5.55 0.10 -9.24 16 7 N -0.70 -8.41 4.79 -55.99 -0.27 -8.68 16 8 C 0.12 1.24 3.46 -69.53 -0.24 1.00 16 9 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 10 C 0.50 6.65 6.99 -10.98 -0.08 6.57 16 11 O -0.53 -9.03 16.12 5.56 0.09 -8.94 16 12 N -0.70 -9.03 4.69 -51.73 -0.24 -9.27 16 13 C 0.14 2.10 2.56 -65.78 -0.17 1.93 16 14 H 0.10 1.40 7.63 -51.93 -0.40 1.00 16 15 C 0.12 2.41 6.61 -2.53 -0.02 2.39 16 16 N -0.61 -13.72 3.21 -170.07 -0.55 -14.26 16 17 C -0.24 -6.62 10.56 -15.06 -0.16 -6.78 16 18 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 19 C 0.02 0.65 5.43 -17.43 -0.09 0.55 16 20 N -0.91 -27.31 13.97 55.49 0.78 -26.54 16 21 Si 0.89 22.02 24.39 -169.99 -4.15 17.88 16 22 H -0.29 -6.79 6.84 56.52 0.39 -6.40 16 23 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 24 H -0.28 -6.84 6.87 56.52 0.39 -6.45 16 25 C 0.13 2.50 4.33 -3.06 -0.01 2.49 16 26 C -0.09 -1.25 0.81 -152.68 -0.12 -1.38 16 27 C -0.13 -1.79 8.41 37.16 0.31 -1.48 16 28 C -0.13 -1.47 8.07 37.16 0.30 -1.17 16 29 C -0.12 -0.87 4.58 -26.59 -0.12 -0.99 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.10 0.74 8.10 -51.93 -0.42 0.32 16 35 H 0.41 5.51 8.44 -40.82 -0.34 5.16 16 36 H 0.40 4.59 6.88 -40.82 -0.28 4.30 16 37 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.03 0.66 7.81 -51.93 -0.41 0.25 16 39 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.04 0.79 7.76 -51.93 -0.40 0.39 16 41 H 0.03 0.64 3.22 -51.93 -0.17 0.47 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.97 7.58 -51.93 -0.39 0.58 16 45 H 0.05 0.56 6.35 -51.93 -0.33 0.23 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 LS Contribution 378.59 15.07 5.71 5.71 Total: -1.00 -34.65 378.59 -7.31 -41.96 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -8.22 Total: 4.20 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -0.56 Total: 7.19 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: -0.28 Total: -58.75 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: 0.19 Total: -18.17 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.15 Total: 17.88 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.65 -7.31 -41.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974594705.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.018 kcal (2) G-P(sol) polarization free energy of solvation -34.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds