Wall clock time and date at job start Fri Apr 10 2020 18:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 110.78356 * 2 1 4 4 C 1.55165 * 110.71789 * 123.23843 * 2 1 3 5 5 C 1.54915 * 101.57980 * 153.86302 * 4 2 1 6 6 N 1.47425 * 104.83334 * 322.99105 * 5 4 2 7 7 C 1.34777 * 125.65136 * 204.16738 * 6 5 4 8 8 O 1.21346 * 120.00255 * 179.97438 * 7 6 5 9 9 C 1.49446 * 119.99501 * 359.95401 * 7 6 5 10 10 O 1.21348 * 120.00378 * 0.02562 * 9 7 6 11 11 N 1.34781 * 120.00029 * 180.02562 * 9 7 6 12 12 C 1.46497 * 120.00501 * 180.02562 * 11 9 7 13 13 H 1.09008 * 110.63995 * 325.69787 * 12 11 9 14 14 C 1.54322 * 110.72242 * 88.83915 * 12 11 9 15 15 N 1.47022 * 107.26823 * 96.17062 * 14 12 11 16 16 C 1.36934 * 125.64669 * 178.90312 * 15 14 12 17 17 H 1.08003 * 120.00201 * 180.02562 * 16 15 14 18 18 C 1.38816 * 120.00180 * 0.03202 * 16 15 14 19 19 N 1.31614 * 119.99888 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99878 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47562 * 90.00046 * 20 18 16 22 22 H 1.48503 * 109.46795 * 209.99636 * 20 18 16 23 23 H 1.48495 * 109.47508 * 329.99570 * 20 18 16 24 24 C 1.47422 * 108.70482 * 358.94799 * 15 14 12 25 25 C 1.55150 * 110.72441 * 202.56103 * 12 11 9 26 26 C 1.53000 * 111.00294 * 35.20796 * 25 12 11 27 27 C 1.52997 * 111.00965 * 159.06068 * 25 12 11 28 28 C 1.47022 * 108.70334 * 24.12789 * 6 5 4 29 29 H 1.08999 * 109.47239 * 181.78845 * 1 2 3 30 30 H 1.09007 * 109.46791 * 301.78830 * 1 2 3 31 31 H 1.08997 * 109.47298 * 61.78039 * 1 2 3 32 32 H 1.08995 * 111.00547 * 271.93634 * 4 2 1 33 33 H 1.09001 * 111.00003 * 35.79214 * 4 2 1 34 34 H 1.08997 * 110.36462 * 204.15099 * 5 4 2 35 35 H 1.08999 * 110.46102 * 81.87572 * 5 4 2 36 36 H 0.97003 * 119.99515 * 0.02562 * 11 9 7 37 37 H 1.08998 * 109.88277 * 215.59237 * 14 12 11 38 38 H 1.09002 * 109.88160 * 336.60145 * 14 12 11 39 39 H 0.97002 * 120.00497 * 180.02562 * 19 18 16 40 40 H 1.08997 * 110.37020 * 142.96933 * 24 15 14 41 41 H 1.09006 * 110.36082 * 265.17611 * 24 15 14 42 42 H 1.09006 * 109.47446 * 60.00601 * 26 25 12 43 43 H 1.09005 * 109.47060 * 180.02562 * 26 25 12 44 44 H 1.08999 * 109.47256 * 300.00275 * 26 25 12 45 45 H 1.09001 * 109.46689 * 60.00010 * 27 25 12 46 46 H 1.08997 * 109.47431 * 179.97438 * 27 25 12 47 47 H 1.08994 * 109.47344 * 300.00267 * 27 25 12 48 48 H 1.08997 * 109.88723 * 239.52626 * 28 6 5 49 49 H 1.09000 * 110.01436 * 118.43179 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0190 0.0000 4 6 2.0789 -0.7955 1.2139 5 6 3.4632 -1.2499 0.6876 6 7 3.2445 -1.5508 -0.7390 7 6 3.9913 -2.3848 -1.4894 8 8 3.7177 -2.5582 -2.6588 9 6 5.1568 -3.0956 -0.8813 10 8 5.4304 -2.9223 0.2882 11 7 5.9041 -3.9293 -1.6318 12 6 7.0463 -4.6265 -1.0356 13 1 7.5287 -4.0012 -0.2843 14 6 6.6054 -5.9730 -0.4240 15 7 6.8711 -7.0155 -1.4261 16 6 6.6395 -8.3554 -1.2644 17 1 6.8700 -9.0436 -2.0642 18 6 6.1083 -8.8292 -0.0726 19 7 5.8277 -7.9906 0.9022 20 14 5.7918 -10.6569 0.1475 21 1 7.0008 -11.3036 0.7176 22 1 4.6443 -10.8529 1.0695 23 1 5.4784 -11.2672 -1.1695 24 6 7.4292 -6.3795 -2.6333 25 6 8.0612 -5.0525 -2.1291 26 6 8.1296 -4.0122 -3.2489 27 6 9.4458 -5.2982 -1.5265 28 6 2.0760 -0.7913 -1.2072 29 1 -0.3634 -1.0271 0.0321 30 1 -0.3633 0.5414 0.8736 31 1 -0.3634 0.4859 -0.9055 32 1 2.1849 -0.1519 2.0871 33 1 1.4450 -1.6536 1.4375 34 1 3.7959 -2.1427 1.2170 35 1 4.1946 -0.4493 0.7985 36 1 5.6856 -4.0675 -2.5667 37 1 7.1782 -6.1742 0.4813 38 1 5.5412 -5.9431 -0.1900 39 1 5.4569 -8.3216 1.7351 40 1 8.1922 -7.0171 -3.0798 41 1 6.6378 -6.1745 -3.3543 42 1 8.4432 -3.0535 -2.8356 43 1 8.8480 -4.3358 -4.0022 44 1 7.1462 -3.9062 -3.7070 45 1 9.3821 -6.0909 -0.7811 46 1 10.1375 -5.5958 -2.3146 47 1 9.8042 -4.3835 -1.0545 48 1 1.3129 -1.4758 -1.5775 49 1 2.3715 -0.1026 -1.9988 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977441965.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:24 Heat of formation + Delta-G solvation = -40.406247 kcal Electronic energy + Delta-G solvation = -28917.731771 eV Core-core repulsion = 25073.585126 eV Total energy + Delta-G solvation = -3844.146645 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.67267 -39.30892 -37.94248 -37.47225 -33.99674 -33.28828 -32.72769 -30.69913 -29.79528 -28.38414 -27.31535 -26.76563 -25.62240 -24.47077 -23.29664 -22.19615 -20.58057 -20.15731 -19.75173 -18.71788 -17.51939 -16.87314 -16.69207 -16.38948 -15.62856 -15.32426 -14.67837 -14.50723 -13.98901 -13.93161 -13.86309 -13.71058 -13.53641 -13.28521 -13.04673 -12.98869 -12.58885 -12.53971 -12.07272 -11.98959 -11.96769 -11.68949 -11.48288 -11.39956 -11.17903 -11.07718 -11.02932 -10.99568 -10.77545 -10.73668 -10.38247 -10.27082 -10.02574 -9.87947 -9.64188 -9.22968 -8.81536 -8.64964 -8.53071 -6.82262 -5.68776 -3.03043 1.68870 2.45341 3.41480 3.46465 3.48122 3.48699 3.69342 4.23324 4.40312 4.51067 4.55735 4.69868 4.91623 5.07669 5.13142 5.16157 5.27195 5.31402 5.36322 5.43316 5.54820 5.58111 5.61486 5.69778 5.72446 5.78628 5.85293 5.87689 5.93300 6.02001 6.04368 6.12895 6.14395 6.17260 6.25819 6.36371 6.55267 6.61313 6.64740 6.68213 6.92154 7.18279 7.45453 7.58069 7.65630 7.82540 7.95343 8.25341 8.35256 9.22640 9.83383 10.48610 11.42322 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.013075 B = 0.003634 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.938282 B = 7702.131731 C = 9001.530573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.105 4.105 3 H 0.086 0.914 4 C -0.133 4.133 5 C 0.096 3.904 6 N -0.594 5.594 7 C 0.522 3.478 8 O -0.525 6.525 9 C 0.508 3.492 10 O -0.519 6.519 11 N -0.676 5.676 12 C 0.121 3.879 13 H 0.092 0.908 14 C 0.176 3.824 15 N -0.602 5.602 16 C -0.228 4.228 17 H 0.078 0.922 18 C -0.007 4.007 19 N -0.920 5.920 20 Si 0.911 3.089 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.142 3.858 25 C -0.089 4.089 26 C -0.133 4.133 27 C -0.125 4.125 28 C 0.109 3.891 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.072 0.928 36 H 0.407 0.593 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.252 0.748 40 H 0.043 0.957 41 H 0.018 0.982 42 H 0.053 0.947 43 H 0.057 0.943 44 H 0.053 0.947 45 H 0.070 0.930 46 H 0.053 0.947 47 H 0.048 0.952 48 H 0.073 0.927 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.007 17.670 -2.499 18.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 H 0.104 0.896 4 C -0.171 4.171 5 C -0.026 4.026 6 N -0.328 5.328 7 C 0.306 3.694 8 O -0.401 6.401 9 C 0.288 3.712 10 O -0.396 6.396 11 N -0.328 5.328 12 C 0.016 3.984 13 H 0.110 0.890 14 C 0.051 3.949 15 N -0.329 5.329 16 C -0.356 4.356 17 H 0.096 0.904 18 C -0.204 4.204 19 N -0.567 5.567 20 Si 0.742 3.258 21 H -0.216 1.216 22 H -0.218 1.218 23 H -0.208 1.208 24 C 0.016 3.984 25 C -0.090 4.090 26 C -0.191 4.191 27 C -0.183 4.183 28 C -0.013 4.013 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.124 0.876 35 H 0.090 0.910 36 H 0.244 0.756 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.035 0.965 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.089 0.911 46 H 0.073 0.927 47 H 0.067 0.933 48 H 0.091 0.909 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.986 17.472 -2.175 18.052 hybrid contribution -0.413 -1.039 -0.262 1.148 sum -4.400 16.433 -2.437 17.186 Atomic orbital electron populations 1.21755 0.93652 1.02444 1.02097 1.22248 0.96458 0.99344 0.94385 0.89605 1.22972 0.96198 1.00394 0.97541 1.22687 0.96828 1.03022 0.80073 1.48227 1.29283 1.42998 1.12341 1.20084 0.83836 0.79664 0.85865 1.90739 1.70465 1.62945 1.15986 1.19760 0.83727 0.81014 0.86702 1.90698 1.69423 1.63996 1.15498 1.45844 1.29455 1.42799 1.14668 1.22668 0.84918 0.95610 0.95157 0.88978 1.21520 1.00064 0.82004 0.91325 1.44418 1.74229 1.03078 1.11160 1.19033 1.35978 0.81402 0.99229 0.90417 1.24800 1.01316 0.97854 0.96409 1.69945 1.49240 1.32241 1.05300 0.86128 0.77465 0.84747 0.77461 1.21626 1.21750 1.20762 1.21745 0.94985 0.91210 0.90498 1.22101 0.95343 0.96526 0.95063 1.21697 1.01434 0.98151 0.97830 1.21594 0.94026 1.01664 1.01009 1.22115 0.87576 0.94678 0.96975 0.92160 0.92006 0.92300 0.89623 0.90284 0.87584 0.90999 0.75575 0.92493 0.93387 0.93720 0.93911 0.96450 0.92826 0.92444 0.92827 0.91122 0.92746 0.93287 0.90912 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.13 37.16 0.34 -0.58 16 2 C -0.11 -0.83 3.55 -88.78 -0.31 -1.14 16 3 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.13 -1.15 6.53 -24.57 -0.16 -1.31 16 5 C 0.10 1.14 6.06 -2.53 -0.02 1.12 16 6 N -0.59 -8.17 3.33 -171.03 -0.57 -8.74 16 7 C 0.52 8.75 7.91 -11.59 -0.09 8.66 16 8 O -0.53 -9.66 16.80 5.50 0.09 -9.56 16 9 C 0.51 9.18 7.86 -11.59 -0.09 9.09 16 10 O -0.52 -10.05 13.46 5.50 0.07 -9.98 16 11 N -0.68 -12.12 4.50 -52.46 -0.24 -12.36 16 12 C 0.12 2.30 2.54 -66.10 -0.17 2.13 16 13 H 0.09 1.75 7.53 -51.92 -0.39 1.36 16 14 C 0.18 4.30 4.80 -3.07 -0.01 4.29 16 15 N -0.60 -15.10 3.38 -169.77 -0.57 -15.67 16 16 C -0.23 -6.32 10.28 -15.06 -0.15 -6.48 16 17 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 18 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 19 N -0.92 -27.26 10.31 55.49 0.57 -26.68 16 20 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 C 0.14 2.86 6.16 -2.27 -0.01 2.84 16 25 C -0.09 -1.49 0.84 -152.11 -0.13 -1.61 16 26 C -0.13 -1.81 8.23 37.16 0.31 -1.50 16 27 C -0.13 -1.97 8.58 37.16 0.32 -1.65 16 28 C 0.11 1.17 6.46 -3.06 -0.02 1.15 16 29 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 30 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.72 8.04 -51.93 -0.42 0.30 16 34 H 0.11 1.51 6.16 -51.93 -0.32 1.19 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.41 7.02 6.48 -40.82 -0.26 6.76 16 37 H 0.06 1.55 7.38 -51.93 -0.38 1.17 16 38 H 0.05 1.35 7.41 -51.93 -0.38 0.97 16 39 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.04 0.84 8.06 -51.93 -0.42 0.42 16 41 H 0.02 0.36 8.00 -51.93 -0.42 -0.06 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.05 0.72 6.44 -51.93 -0.33 0.39 16 45 H 0.07 1.31 7.91 -51.93 -0.41 0.90 16 46 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.07 0.82 7.82 -51.93 -0.41 0.41 16 49 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 384.00 15.07 5.79 5.79 Total: -1.00 -32.08 384.00 -8.52 -40.60 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -8.34 Total: 4.64 kcal Atomic # 6 Polarization: 15.00 SS G_CDS: -0.30 Total: 14.70 kcal Atomic # 7 Polarization: -62.65 SS G_CDS: -0.81 Total: -63.45 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: 0.17 Total: -19.54 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.08 -8.52 -40.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977441965.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.193 kcal (2) G-P(sol) polarization free energy of solvation -32.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds