Wall clock time and date at job start Fri Apr 10 2020 18:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 110.64221 * 2 1 4 4 C 1.55166 * 110.87338 * 236.75542 * 2 1 3 5 5 C 1.55122 * 101.48838 * 205.89736 * 4 2 1 6 6 N 1.47429 * 104.72121 * 37.29540 * 5 4 2 7 7 C 1.34782 * 125.64880 * 155.81637 * 6 5 4 8 8 O 1.21341 * 120.00156 * 179.68812 * 7 6 5 9 9 C 1.49451 * 119.99636 * 359.69493 * 7 6 5 10 10 O 1.21341 * 120.00208 * 359.97438 * 9 7 6 11 11 N 1.34782 * 119.99636 * 180.02562 * 9 7 6 12 12 C 1.46501 * 119.99775 * 179.97438 * 11 9 7 13 13 H 1.08999 * 110.88229 * 31.12394 * 12 11 9 14 14 C 1.54908 * 111.03857 * 267.21423 * 12 11 9 15 15 N 1.47424 * 104.83353 * 278.92164 * 14 12 11 16 16 C 1.36932 * 125.65060 * 155.91886 * 15 14 12 17 17 H 1.08004 * 119.99431 * 341.97406 * 16 15 14 18 18 C 1.38809 * 120.00512 * 161.97194 * 16 15 14 19 19 N 1.31613 * 120.00143 * 156.33424 * 18 16 15 20 20 Si 1.86799 * 119.99598 * 336.33966 * 18 16 15 21 21 H 1.48495 * 109.47486 * 84.67731 * 20 18 16 22 22 H 1.48506 * 109.46820 * 204.67324 * 20 18 16 23 23 H 1.48498 * 109.47608 * 324.67170 * 20 18 16 24 24 C 1.47021 * 108.70079 * 335.87371 * 15 14 12 25 25 C 1.54319 * 107.27549 * 1.05643 * 24 15 14 26 26 C 1.53004 * 110.72020 * 140.55522 * 25 24 15 27 27 C 1.52999 * 110.72405 * 263.65331 * 25 24 15 28 28 C 1.47020 * 108.70327 * 335.55114 * 6 5 4 29 29 H 1.09000 * 109.46796 * 298.30817 * 1 2 3 30 30 H 1.09003 * 109.47226 * 58.30784 * 1 2 3 31 31 H 1.09004 * 109.47314 * 178.30931 * 1 2 3 32 32 H 1.09001 * 110.99653 * 324.13839 * 4 2 1 33 33 H 1.09001 * 111.00368 * 87.94722 * 4 2 1 34 34 H 1.08996 * 110.50198 * 278.45222 * 5 4 2 35 35 H 1.09004 * 110.34466 * 156.05306 * 5 4 2 36 36 H 0.96997 * 119.99710 * 0.02562 * 11 9 7 37 37 H 1.09001 * 110.36747 * 37.76489 * 14 12 11 38 38 H 1.09006 * 110.36464 * 159.97590 * 14 12 11 39 39 H 0.97001 * 120.00426 * 180.02562 * 19 18 16 40 40 H 1.09001 * 109.88333 * 241.64127 * 24 15 14 41 41 H 1.08999 * 109.88323 * 120.47997 * 24 15 14 42 42 H 1.08995 * 109.47045 * 61.45773 * 26 25 24 43 43 H 1.09004 * 109.47102 * 181.45653 * 26 25 24 44 44 H 1.08998 * 109.47261 * 301.45517 * 26 25 24 45 45 H 1.08998 * 109.47139 * 58.54289 * 27 25 24 46 46 H 1.09000 * 109.47041 * 178.54320 * 27 25 24 47 47 H 1.08996 * 109.46842 * 298.54531 * 27 25 24 48 48 H 1.09000 * 109.88035 * 120.70847 * 28 6 5 49 49 H 1.09003 * 109.88538 * 241.87100 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0828 -0.7948 -1.2125 5 6 3.4706 -1.2412 -0.6825 6 7 3.2470 -1.5462 0.7425 7 6 3.9957 -2.3769 1.4949 8 8 3.7213 -2.5495 2.6642 9 6 5.1638 -3.0853 0.8889 10 8 5.4379 -2.9130 -0.2805 11 7 5.9121 -3.9164 1.6412 12 6 7.0569 -4.6113 1.0471 13 1 7.5077 -4.0116 0.2563 14 6 6.6464 -6.0085 0.5190 15 7 6.6466 -6.8772 1.7101 16 6 5.9317 -8.0363 1.8528 17 1 5.0946 -8.2380 1.2007 18 6 6.2826 -8.9519 2.8353 19 7 5.3869 -9.7996 3.2950 20 14 8.0261 -8.9807 3.5050 21 1 8.1572 -7.9732 4.5880 22 1 8.3262 -10.3308 4.0461 23 1 8.9811 -8.6615 2.4136 24 6 7.5426 -6.2934 2.7191 25 6 8.1047 -4.9828 2.1294 26 6 8.1826 -3.8957 3.2032 27 6 9.4790 -5.2181 1.4995 28 6 2.0760 -0.7892 1.2085 29 1 -0.3633 0.4873 0.9048 30 1 -0.3634 0.5399 -0.8744 31 1 -0.3634 -1.0272 -0.0303 32 1 1.4513 -1.6546 -1.4367 33 1 2.1879 -0.1516 -2.0862 34 1 4.1970 -0.4355 -0.7886 35 1 3.8101 -2.1314 -1.2121 36 1 5.6923 -4.0549 2.5757 37 1 5.6503 -5.9697 0.0779 38 1 7.3710 -6.3653 -0.2130 39 1 5.6319 -10.4392 3.9818 40 1 8.3588 -6.9833 2.9336 41 1 6.9851 -6.0805 3.6312 42 1 8.8567 -4.2169 3.9972 43 1 8.5572 -2.9731 2.7597 44 1 7.1895 -3.7225 3.6176 45 1 9.3960 -5.9734 0.7180 46 1 9.8449 -4.2868 1.0674 47 1 10.1752 -5.5620 2.2645 48 1 1.3141 -1.4755 1.5780 49 1 2.3711 -0.0993 1.9991 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977441966.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:27 Heat of formation + Delta-G solvation = -33.097484 kcal Electronic energy + Delta-G solvation = -28939.425509 eV Core-core repulsion = 25095.595795 eV Total energy + Delta-G solvation = -3843.829714 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.83429 -39.56915 -38.18673 -37.63374 -34.15161 -33.37951 -32.87132 -31.41270 -29.87483 -28.74211 -27.48077 -26.93862 -25.94941 -24.67796 -23.41636 -22.28152 -20.74228 -20.40722 -19.85630 -19.03337 -17.77472 -17.05796 -16.86992 -16.50653 -15.91861 -15.39363 -15.16668 -14.77308 -14.15403 -14.10145 -13.94572 -13.66558 -13.66302 -13.32574 -13.18794 -13.08311 -12.89223 -12.75514 -12.60349 -12.29543 -12.11451 -12.05019 -11.65477 -11.56226 -11.50920 -11.27629 -11.20516 -11.11326 -10.86688 -10.83779 -10.76649 -10.53158 -10.26453 -9.79521 -9.43500 -9.30195 -9.02528 -8.85891 -8.56023 -7.05903 -5.94234 -3.23257 1.53347 2.30922 3.30978 3.34789 3.47087 3.50808 3.53482 4.14461 4.31014 4.48196 4.53616 4.54938 4.67999 4.87334 4.99879 5.04134 5.09527 5.10424 5.12836 5.30998 5.36298 5.42799 5.51010 5.52448 5.58479 5.61984 5.64211 5.75626 5.78045 5.78903 5.82127 5.93976 5.95531 6.02636 6.07061 6.13847 6.20327 6.32693 6.36533 6.48537 6.57387 6.72094 6.74941 7.08673 7.39258 7.69430 7.80665 8.13831 8.31386 8.83404 9.69287 10.16452 11.22180 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.018338 B = 0.003351 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.518603 B = 8354.401780 C = 9000.267450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.105 4.105 3 H 0.085 0.915 4 C -0.133 4.133 5 C 0.097 3.903 6 N -0.594 5.594 7 C 0.520 3.480 8 O -0.518 6.518 9 C 0.511 3.489 10 O -0.526 6.526 11 N -0.671 5.671 12 C 0.136 3.864 13 H 0.102 0.898 14 C 0.126 3.874 15 N -0.606 5.606 16 C -0.241 4.241 17 H 0.092 0.908 18 C 0.023 3.977 19 N -0.906 5.906 20 Si 0.886 3.114 21 H -0.286 1.286 22 H -0.305 1.305 23 H -0.278 1.278 24 C 0.125 3.875 25 C -0.086 4.086 26 C -0.135 4.135 27 C -0.131 4.131 28 C 0.109 3.891 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.414 0.586 37 H 0.052 0.948 38 H 0.038 0.962 39 H 0.263 0.737 40 H 0.031 0.969 41 H 0.042 0.958 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.063 0.937 46 H 0.055 0.945 47 H 0.059 0.941 48 H 0.074 0.926 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.363 21.949 -7.113 23.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.124 4.124 3 H 0.104 0.896 4 C -0.171 4.171 5 C -0.025 4.025 6 N -0.329 5.329 7 C 0.304 3.696 8 O -0.393 6.393 9 C 0.292 3.708 10 O -0.404 6.404 11 N -0.323 5.323 12 C 0.031 3.969 13 H 0.120 0.880 14 C -0.001 4.001 15 N -0.333 5.333 16 C -0.368 4.368 17 H 0.109 0.891 18 C -0.176 4.176 19 N -0.549 5.549 20 Si 0.718 3.282 21 H -0.214 1.214 22 H -0.233 1.233 23 H -0.205 1.205 24 C 0.000 4.000 25 C -0.088 4.088 26 C -0.193 4.193 27 C -0.189 4.189 28 C -0.014 4.014 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.122 0.878 36 H 0.252 0.748 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.049 0.951 41 H 0.059 0.941 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.083 0.917 46 H 0.074 0.926 47 H 0.078 0.922 48 H 0.092 0.908 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.358 21.671 -7.132 22.936 hybrid contribution 0.870 -0.325 0.953 1.330 sum -1.489 21.347 -6.179 22.273 Atomic orbital electron populations 1.21756 0.93586 1.02482 1.02166 1.22246 0.96521 0.99347 0.94309 0.89616 1.23003 0.96071 1.00453 0.97569 1.22716 0.96863 1.02810 0.80141 1.48225 1.29108 1.43243 1.12374 1.19960 0.83846 0.79902 0.85938 1.90782 1.70206 1.62466 1.15847 1.19829 0.83677 0.80764 0.86559 1.90674 1.69751 1.64315 1.15634 1.45689 1.28862 1.42566 1.15183 1.22342 0.85039 0.93975 0.95576 0.87973 1.22001 0.99621 0.87999 0.90473 1.44738 1.52782 1.24936 1.10843 1.18624 1.07512 0.93256 1.17424 0.89069 1.24941 0.97604 0.97019 0.98037 1.69857 1.32393 1.23365 1.29311 0.86918 0.87591 0.75175 0.78515 1.21367 1.23339 1.20490 1.21828 0.93494 0.91425 0.93245 1.21882 0.95082 0.96328 0.95466 1.21755 1.01993 0.97469 0.98064 1.21730 0.94543 1.01579 1.01051 1.22139 0.87454 0.94756 0.97013 0.92225 0.91999 0.92135 0.90268 0.89655 0.91006 0.87771 0.74768 0.92952 0.94414 0.92722 0.95126 0.94051 0.92173 0.92485 0.92390 0.91749 0.92561 0.92234 0.90753 0.91106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 9.14 37.15 0.34 -0.49 16 2 C -0.11 -0.73 3.53 -88.78 -0.31 -1.05 16 3 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -0.98 6.55 -24.46 -0.16 -1.14 16 5 C 0.10 0.99 6.08 -2.41 -0.01 0.97 16 6 N -0.59 -7.45 3.33 -170.89 -0.57 -8.02 16 7 C 0.52 8.12 7.91 -11.58 -0.09 8.02 16 8 O -0.52 -9.30 16.80 5.50 0.09 -9.21 16 9 C 0.51 8.20 7.86 -11.58 -0.09 8.11 16 10 O -0.53 -8.65 13.41 5.50 0.07 -8.57 16 11 N -0.67 -11.02 4.51 -52.16 -0.24 -11.26 16 12 C 0.14 2.24 2.67 -65.78 -0.18 2.06 16 13 H 0.10 1.56 7.44 -51.93 -0.39 1.17 16 14 C 0.13 2.51 6.61 -2.53 -0.02 2.49 16 15 N -0.61 -14.50 3.21 -170.08 -0.55 -15.05 16 16 C -0.24 -6.88 10.56 -15.06 -0.16 -7.04 16 17 H 0.09 2.78 8.06 -52.48 -0.42 2.35 16 18 C 0.02 0.67 5.43 -17.43 -0.09 0.57 16 19 N -0.91 -28.21 13.97 55.49 0.78 -27.44 16 20 Si 0.89 22.82 24.39 -169.99 -4.15 18.67 16 21 H -0.29 -7.11 6.84 56.52 0.39 -6.73 16 22 H -0.31 -7.99 7.11 56.52 0.40 -7.59 16 23 H -0.28 -6.99 6.87 56.52 0.39 -6.60 16 24 C 0.12 2.66 4.33 -3.07 -0.01 2.65 16 25 C -0.09 -1.40 0.80 -152.67 -0.12 -1.52 16 26 C -0.14 -1.85 8.15 37.16 0.30 -1.54 16 27 C -0.13 -1.88 8.44 37.16 0.31 -1.57 16 28 C 0.11 1.09 6.46 -3.07 -0.02 1.07 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.61 8.05 -51.93 -0.42 0.19 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.10 1.25 6.14 -51.93 -0.32 0.93 16 36 H 0.41 7.05 6.60 -40.82 -0.27 6.78 16 37 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.04 0.73 7.73 -51.93 -0.40 0.33 16 39 H 0.26 7.78 8.31 -40.82 -0.34 7.45 16 40 H 0.03 0.71 3.22 -51.93 -0.17 0.55 16 41 H 0.04 0.93 7.82 -51.93 -0.41 0.52 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.81 6.34 -51.93 -0.33 0.48 16 45 H 0.06 0.99 7.47 -51.93 -0.39 0.60 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.07 0.79 7.82 -51.93 -0.41 0.38 16 49 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 377.68 15.07 5.69 5.69 Total: -1.00 -33.09 377.68 -7.33 -40.42 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -8.15 Total: 3.14 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: -0.32 Total: 11.61 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: -0.57 Total: -61.76 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: 0.17 Total: -17.78 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -4.15 Total: 18.67 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.09 -7.33 -40.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977441966.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.326 kcal (2) G-P(sol) polarization free energy of solvation -33.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds