Wall clock time and date at job start Fri Apr 10 2020 18:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46716 * 2 1 4 4 H 1.08996 * 109.47447 * 55.17792 * 3 2 1 5 5 C 1.50701 * 109.46811 * 175.17375 * 3 2 1 6 6 O 1.21288 * 119.99892 * 107.19841 * 5 3 2 7 7 N 1.34774 * 120.00179 * 287.20000 * 5 3 2 8 8 C 1.47023 * 125.64800 * 175.49339 * 7 5 3 9 9 C 1.54325 * 107.27115 * 178.97249 * 8 7 5 10 10 C 1.55157 * 102.94155 * 337.80601 * 9 8 7 11 11 H 1.09002 * 111.00603 * 277.42958 * 10 9 8 12 12 N 1.46499 * 111.00648 * 153.57510 * 10 9 8 13 13 C 1.46503 * 120.00008 * 301.45506 * 12 10 9 14 14 C 1.36935 * 119.99953 * 121.45231 * 12 10 9 15 15 H 1.07991 * 120.00348 * 21.12473 * 14 12 10 16 16 C 1.38817 * 119.99749 * 201.12518 * 14 12 10 17 17 N 1.31617 * 120.00029 * 16.69322 * 16 14 12 18 18 Si 1.86801 * 119.99895 * 196.69188 * 16 14 12 19 19 H 1.48505 * 109.47221 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46989 * 119.99816 * 18 16 14 21 21 H 1.48499 * 109.46895 * 240.00134 * 18 16 14 22 22 C 1.47421 * 125.64927 * 355.52933 * 7 5 3 23 23 N 1.46499 * 109.46977 * 295.17065 * 3 2 1 24 24 C 1.46763 * 124.34869 * 120.00555 * 23 3 2 25 25 C 1.54475 * 105.47535 * 197.01893 * 24 23 3 26 26 C 1.54630 * 101.76353 * 334.57943 * 25 24 23 27 27 C 1.34413 * 124.35292 * 299.70855 * 23 3 2 28 28 O 1.21285 * 124.94081 * 359.56839 * 27 23 3 29 29 H 1.08997 * 109.47105 * 59.99954 * 1 2 3 30 30 H 1.09004 * 109.47206 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47060 * 300.00457 * 1 2 3 32 32 H 1.08996 * 109.47361 * 239.99720 * 2 1 3 33 33 H 1.09000 * 109.47217 * 119.99521 * 2 1 3 34 34 H 1.09005 * 109.88452 * 59.55400 * 8 7 5 35 35 H 1.09002 * 110.00955 * 298.46138 * 8 7 5 36 36 H 1.08999 * 110.72092 * 96.16573 * 9 8 7 37 37 H 1.08996 * 110.71907 * 219.44232 * 9 8 7 38 38 H 1.09000 * 109.46866 * 95.08758 * 13 12 10 39 39 H 1.08999 * 109.47366 * 215.08810 * 13 12 10 40 40 H 1.09006 * 109.47141 * 335.09027 * 13 12 10 41 41 H 0.97007 * 119.99966 * 180.02562 * 17 16 14 42 42 H 1.08998 * 110.36706 * 322.93666 * 22 7 5 43 43 H 1.08996 * 110.36686 * 85.14354 * 22 7 5 44 44 H 1.09001 * 110.24365 * 316.01461 * 24 23 3 45 45 H 1.09002 * 110.25161 * 77.92624 * 24 23 3 46 46 H 1.08999 * 110.97313 * 92.69930 * 25 24 23 47 47 H 1.09000 * 110.97161 * 216.42431 * 25 24 23 48 48 H 1.09007 * 110.48229 * 143.47292 * 26 25 24 49 49 H 1.08995 * 110.48744 * 265.98602 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6078 1.9807 0.8436 5 6 3.5422 1.4443 0.1195 6 8 4.2266 1.7273 -0.8409 7 7 4.1252 1.1313 1.2937 8 6 5.5714 1.0032 1.5250 9 6 5.7682 0.6599 3.0167 10 6 4.4551 1.1704 3.6668 11 1 4.5074 2.2411 3.8642 12 7 4.1523 0.4269 4.8923 13 6 3.9829 -1.0275 4.8437 14 6 4.0277 1.0913 6.0831 15 1 3.8111 2.1493 6.0911 16 6 4.1797 0.4049 7.2801 17 7 4.7562 -0.7782 7.2916 18 14 3.5659 1.1604 8.8744 19 1 2.9601 2.4867 8.5928 20 1 2.5454 0.2699 9.4835 21 1 4.7037 1.3250 9.8144 22 6 3.4182 0.8600 2.5586 23 7 1.6488 2.0987 -1.2501 24 6 0.8037 3.2961 -1.3276 25 6 0.3113 3.3591 -2.7904 26 6 1.4265 2.5862 -3.5320 27 6 2.0224 1.6849 -2.4731 28 8 2.7320 0.7267 -2.6955 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 6.0689 1.9448 1.2925 35 1 5.9792 0.2054 0.9041 36 1 5.8735 -0.4162 3.1541 37 1 6.6306 1.1880 3.4234 38 1 4.9267 -1.5118 5.0946 39 1 3.2185 -1.3284 5.5600 40 1 3.6777 -1.3245 3.8403 41 1 4.8621 -1.2580 8.1280 42 1 2.5514 1.5135 2.6564 43 1 3.1118 -0.1849 2.6053 44 1 -0.0436 3.2044 -0.6480 45 1 1.3860 4.1852 -1.0856 46 1 -0.6502 2.8576 -2.9003 47 1 0.2530 4.3904 -3.1383 48 1 1.0052 1.9962 -4.3460 49 1 2.1804 3.2755 -3.9121 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980441499.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:07 Heat of formation + Delta-G solvation = -33.870952 kcal Electronic energy + Delta-G solvation = -29124.869245 eV Core-core repulsion = 25281.005991 eV Total energy + Delta-G solvation = -3843.863254 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.90185 -39.40026 -37.36625 -36.35711 -34.93818 -34.75144 -31.62812 -31.16789 -30.12963 -27.85631 -27.71719 -27.05496 -26.12875 -23.66758 -22.51312 -22.13239 -22.05737 -19.97258 -19.40915 -18.53114 -17.38123 -17.11766 -16.71221 -16.23941 -15.80896 -15.47561 -15.05802 -14.59279 -14.39895 -14.04136 -13.76015 -13.44868 -13.38405 -13.30124 -13.14827 -13.06732 -12.75616 -12.64134 -12.56385 -12.48510 -11.94190 -11.86768 -11.74800 -11.35897 -11.28295 -11.17341 -11.06016 -11.02907 -10.80890 -10.59909 -10.52443 -10.25649 -9.95886 -9.92168 -9.73300 -9.57086 -8.69598 -8.63733 -8.31871 -6.89085 -5.82803 -3.27759 2.58507 2.78404 2.81160 3.32274 3.35774 3.41054 3.42234 4.19365 4.24138 4.39029 4.53519 4.60399 4.75232 4.81676 4.90842 5.10612 5.15034 5.19850 5.23288 5.29822 5.39646 5.41987 5.42549 5.45505 5.54387 5.60826 5.62135 5.71079 5.71849 5.83069 5.90533 5.93880 5.99182 6.14819 6.17694 6.36884 6.39213 6.56935 6.62536 6.70712 6.83622 7.11400 7.25388 7.62638 7.72432 7.77836 8.22724 8.27576 8.42095 9.11828 9.75057 10.22912 11.22080 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.020766 B = 0.003077 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.037956 B = 9096.689280 C = 9535.538075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.134 4.134 3 C 0.150 3.850 4 H 0.109 0.891 5 C 0.515 3.485 6 O -0.527 6.527 7 N -0.612 5.612 8 C 0.113 3.887 9 C -0.151 4.151 10 C 0.174 3.826 11 H 0.079 0.921 12 N -0.585 5.585 13 C 0.158 3.842 14 C -0.262 4.262 15 H 0.071 0.929 16 C 0.005 3.995 17 N -0.902 5.902 18 Si 0.904 3.096 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.290 1.290 22 C 0.075 3.925 23 N -0.609 5.609 24 C 0.103 3.897 25 C -0.129 4.129 26 C -0.155 4.155 27 C 0.524 3.476 28 O -0.510 6.510 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.033 0.967 39 H 0.043 0.957 40 H 0.004 0.996 41 H 0.253 0.747 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.081 0.919 47 H 0.089 0.911 48 H 0.098 0.902 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.622 6.674 -16.606 20.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C 0.043 3.957 4 H 0.127 0.873 5 C 0.301 3.699 6 O -0.402 6.402 7 N -0.347 5.347 8 C -0.010 4.010 9 C -0.192 4.192 10 C 0.063 3.937 11 H 0.097 0.903 12 N -0.305 5.305 13 C 0.013 3.987 14 C -0.391 4.391 15 H 0.089 0.911 16 C -0.194 4.194 17 N -0.546 5.546 18 Si 0.734 3.266 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.217 1.217 22 C -0.050 4.050 23 N -0.344 5.344 24 C -0.020 4.020 25 C -0.167 4.167 26 C -0.195 4.195 27 C 0.312 3.688 28 O -0.384 6.384 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.051 0.949 39 H 0.061 0.939 40 H 0.022 0.978 41 H 0.063 0.937 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.098 0.902 45 H 0.088 0.912 46 H 0.100 0.900 47 H 0.108 0.892 48 H 0.117 0.883 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.864 6.165 -17.083 20.667 hybrid contribution -0.161 0.358 1.122 1.188 sum -10.025 6.522 -15.961 19.945 Atomic orbital electron populations 1.21694 0.94597 1.02065 1.01721 1.21844 0.96950 0.94053 1.04455 1.20797 0.92061 0.95825 0.87000 0.87301 1.20427 0.90227 0.77537 0.81730 1.90712 1.64801 1.47877 1.36834 1.48434 1.08260 1.68829 1.09168 1.21907 0.80801 1.00813 0.97486 1.23257 1.01211 1.02638 0.92066 1.21382 0.89958 0.96405 0.85907 0.90329 1.43861 1.80897 1.03281 1.02496 1.20828 1.00182 0.82962 0.94711 1.19245 1.42838 0.94099 0.82950 0.91094 1.24972 0.99279 0.97294 0.97847 1.70103 1.44141 1.14607 1.25722 0.86203 0.78267 0.78528 0.83619 1.20264 1.21548 1.21741 1.23112 0.97068 1.01230 0.83546 1.47964 1.51716 1.29325 1.05405 1.22096 0.94263 0.87675 0.97954 1.22561 0.98481 1.01810 0.93857 1.22318 0.99384 0.99597 0.98218 1.20678 0.79545 0.84690 0.83926 1.90716 1.35940 1.28365 1.83369 0.92802 0.92230 0.92437 0.89943 0.89942 0.92084 0.92261 0.90612 0.90545 0.94894 0.93857 0.97801 0.93672 0.91317 0.90864 0.90238 0.91188 0.89985 0.89242 0.88328 0.88015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.80 37.16 0.36 -1.02 16 2 C -0.13 -1.68 5.29 -26.73 -0.14 -1.82 16 3 C 0.15 1.95 2.06 -69.08 -0.14 1.81 16 4 H 0.11 1.19 7.11 -51.93 -0.37 0.83 16 5 C 0.51 8.66 6.96 -10.99 -0.08 8.58 16 6 O -0.53 -10.77 14.60 -14.89 -0.22 -10.98 16 7 N -0.61 -9.95 3.33 -170.52 -0.57 -10.52 16 8 C 0.11 1.85 6.87 -3.06 -0.02 1.82 16 9 C -0.15 -2.63 6.54 -24.90 -0.16 -2.79 16 10 C 0.17 3.27 3.54 -65.78 -0.23 3.04 16 11 H 0.08 1.49 7.93 -51.93 -0.41 1.08 16 12 N -0.58 -13.46 2.96 -171.03 -0.51 -13.97 16 13 C 0.16 3.59 7.83 59.85 0.47 4.05 16 14 C -0.26 -6.74 9.62 -15.06 -0.14 -6.88 16 15 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 16 C 0.01 0.13 5.02 -17.43 -0.09 0.05 16 17 N -0.90 -25.14 10.81 55.49 0.60 -24.54 16 18 Si 0.90 20.87 29.59 -169.99 -5.03 15.84 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 C 0.08 1.20 5.45 -2.53 -0.01 1.18 16 23 N -0.61 -7.27 2.16 -166.16 -0.36 -7.62 16 24 C 0.10 0.78 7.30 -3.12 -0.02 0.76 16 25 C -0.13 -0.74 7.18 -25.10 -0.18 -0.92 16 26 C -0.15 -1.36 6.86 -26.74 -0.18 -1.55 16 27 C 0.52 7.30 6.70 -10.86 -0.07 7.23 16 28 O -0.51 -9.52 14.91 -14.88 -0.22 -9.75 16 29 H 0.05 0.50 7.75 -51.93 -0.40 0.10 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.08 1.24 6.67 -51.93 -0.35 0.90 16 33 H 0.08 1.05 6.61 -51.93 -0.34 0.70 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.08 1.40 7.28 -51.93 -0.38 1.02 16 37 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.03 0.83 7.38 -51.93 -0.38 0.44 16 39 H 0.04 1.07 7.31 -51.93 -0.38 0.69 16 40 H 0.00 0.07 6.04 -51.93 -0.31 -0.24 16 41 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 42 H 0.07 0.99 7.14 -51.93 -0.37 0.61 16 43 H 0.07 1.20 5.31 -51.93 -0.28 0.92 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.10 0.75 8.14 -51.92 -0.42 0.33 16 49 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 378.93 15.07 5.71 5.71 Total: -1.00 -33.53 378.93 -9.41 -42.94 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -8.17 Total: -0.64 kcal Atomic # 6 Polarization: 14.19 SS G_CDS: -0.65 Total: 13.54 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: -0.83 Total: -56.66 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.44 Total: -20.73 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.53 -9.41 -42.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980441499.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.070 kcal (2) G-P(sol) polarization free energy of solvation -33.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds