Wall clock time and date at job start Fri Apr 10 2020 18:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46716 * 2 1 4 4 H 1.08996 * 109.47447 * 55.17792 * 3 2 1 5 5 C 1.50701 * 109.46811 * 175.17375 * 3 2 1 6 6 O 1.21288 * 119.99892 * 107.19841 * 5 3 2 7 7 N 1.34774 * 120.00179 * 287.20000 * 5 3 2 8 8 C 1.47023 * 125.64800 * 175.49339 * 7 5 3 9 9 C 1.54325 * 107.27115 * 178.97249 * 8 7 5 10 10 C 1.55157 * 102.94155 * 337.80601 * 9 8 7 11 11 H 1.09002 * 111.00603 * 277.42958 * 10 9 8 12 12 N 1.46499 * 111.00648 * 153.57510 * 10 9 8 13 13 C 1.46503 * 120.00008 * 301.45506 * 12 10 9 14 14 C 1.36935 * 119.99953 * 121.45231 * 12 10 9 15 15 H 1.07991 * 120.00348 * 21.12473 * 14 12 10 16 16 C 1.38817 * 119.99749 * 201.12518 * 14 12 10 17 17 N 1.31617 * 120.00029 * 16.69322 * 16 14 12 18 18 Si 1.86801 * 119.99895 * 196.69188 * 16 14 12 19 19 H 1.48505 * 109.47221 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46989 * 119.99816 * 18 16 14 21 21 H 1.48499 * 109.46895 * 240.00134 * 18 16 14 22 22 C 1.47421 * 125.64927 * 355.52933 * 7 5 3 23 23 N 1.46499 * 109.46977 * 295.17065 * 3 2 1 24 24 C 1.46763 * 124.34869 * 120.00555 * 23 3 2 25 25 C 1.54475 * 105.47535 * 197.01893 * 24 23 3 26 26 C 1.54630 * 101.76353 * 334.57943 * 25 24 23 27 27 C 1.34413 * 124.35292 * 299.70855 * 23 3 2 28 28 O 1.21285 * 124.94081 * 359.56839 * 27 23 3 29 29 H 1.08997 * 109.47105 * 59.99954 * 1 2 3 30 30 H 1.09004 * 109.47206 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47060 * 300.00457 * 1 2 3 32 32 H 1.08996 * 109.47361 * 239.99720 * 2 1 3 33 33 H 1.09000 * 109.47217 * 119.99521 * 2 1 3 34 34 H 1.09005 * 109.88452 * 59.55400 * 8 7 5 35 35 H 1.09002 * 110.00955 * 298.46138 * 8 7 5 36 36 H 1.08999 * 110.72092 * 96.16573 * 9 8 7 37 37 H 1.08996 * 110.71907 * 219.44232 * 9 8 7 38 38 H 1.09000 * 109.46866 * 95.08758 * 13 12 10 39 39 H 1.08999 * 109.47366 * 215.08810 * 13 12 10 40 40 H 1.09006 * 109.47141 * 335.09027 * 13 12 10 41 41 H 0.97007 * 119.99966 * 180.02562 * 17 16 14 42 42 H 1.08998 * 110.36706 * 322.93666 * 22 7 5 43 43 H 1.08996 * 110.36686 * 85.14354 * 22 7 5 44 44 H 1.09001 * 110.24365 * 316.01461 * 24 23 3 45 45 H 1.09002 * 110.25161 * 77.92624 * 24 23 3 46 46 H 1.08999 * 110.97313 * 92.69930 * 25 24 23 47 47 H 1.09000 * 110.97161 * 216.42431 * 25 24 23 48 48 H 1.09007 * 110.48229 * 143.47292 * 26 25 24 49 49 H 1.08995 * 110.48744 * 265.98602 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6078 1.9807 0.8436 5 6 3.5422 1.4443 0.1195 6 8 4.2266 1.7273 -0.8409 7 7 4.1252 1.1313 1.2937 8 6 5.5714 1.0032 1.5250 9 6 5.7682 0.6599 3.0167 10 6 4.4551 1.1704 3.6668 11 1 4.5074 2.2411 3.8642 12 7 4.1523 0.4269 4.8923 13 6 3.9829 -1.0275 4.8437 14 6 4.0277 1.0913 6.0831 15 1 3.8111 2.1493 6.0911 16 6 4.1797 0.4049 7.2801 17 7 4.7562 -0.7782 7.2916 18 14 3.5659 1.1604 8.8744 19 1 2.9601 2.4867 8.5928 20 1 2.5454 0.2699 9.4835 21 1 4.7037 1.3250 9.8144 22 6 3.4182 0.8600 2.5586 23 7 1.6488 2.0987 -1.2501 24 6 0.8037 3.2961 -1.3276 25 6 0.3113 3.3591 -2.7904 26 6 1.4265 2.5862 -3.5320 27 6 2.0224 1.6849 -2.4731 28 8 2.7320 0.7267 -2.6955 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 6.0689 1.9448 1.2925 35 1 5.9792 0.2054 0.9041 36 1 5.8735 -0.4162 3.1541 37 1 6.6306 1.1880 3.4234 38 1 4.9267 -1.5118 5.0946 39 1 3.2185 -1.3284 5.5600 40 1 3.6777 -1.3245 3.8403 41 1 4.8621 -1.2580 8.1280 42 1 2.5514 1.5135 2.6564 43 1 3.1118 -0.1849 2.6053 44 1 -0.0436 3.2044 -0.6480 45 1 1.3860 4.1852 -1.0856 46 1 -0.6502 2.8576 -2.9003 47 1 0.2530 4.3904 -3.1383 48 1 1.0052 1.9962 -4.3460 49 1 2.1804 3.2755 -3.9121 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980441499.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:06 Heat of formation + Delta-G solvation = -53.652554 kcal Electronic energy + Delta-G solvation = -29125.727039 eV Core-core repulsion = 25281.005991 eV Total energy + Delta-G solvation = -3844.721048 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.94691 -40.63437 -38.83911 -37.38448 -36.49474 -35.85689 -33.37827 -31.96540 -31.63489 -29.36246 -28.44406 -28.07938 -28.00642 -25.26054 -23.88282 -23.16728 -22.69290 -21.18645 -20.97385 -19.65063 -18.91005 -18.48658 -17.80690 -17.36762 -17.16811 -16.52335 -16.43246 -16.02476 -15.58585 -15.25318 -15.00530 -14.89536 -14.55414 -14.45582 -14.35622 -14.21489 -14.08894 -13.78814 -13.67165 -13.39296 -13.33934 -12.99823 -12.86226 -12.80574 -12.51894 -12.41076 -12.33671 -12.17711 -12.12732 -12.02711 -12.01863 -11.81784 -11.77069 -11.48003 -11.02814 -10.63255 -10.59729 -9.72289 -9.65330 -8.79799 -7.81575 -5.28120 1.48736 1.50082 1.52609 1.55686 1.62030 1.85099 2.20925 2.54153 3.24848 3.30983 3.48402 3.66716 3.71926 3.82825 3.85842 3.88003 3.96954 4.09233 4.14728 4.19956 4.30603 4.35851 4.40487 4.45010 4.61465 4.69872 4.70659 4.75253 4.76308 4.86708 4.89086 4.98143 5.05188 5.09634 5.12187 5.12626 5.21408 5.25900 5.28277 5.31577 5.39551 5.57913 5.68326 5.74715 6.22458 6.32062 6.45896 7.03896 7.15549 7.31340 7.86197 8.29839 9.21793 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.020766 B = 0.003077 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.037956 B = 9096.689280 C = 9535.538075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.129 4.129 3 C 0.151 3.849 4 H 0.138 0.862 5 C 0.509 3.491 6 O -0.568 6.568 7 N -0.611 5.611 8 C 0.118 3.882 9 C -0.140 4.140 10 C 0.167 3.833 11 H 0.080 0.920 12 N -0.597 5.597 13 C 0.175 3.825 14 C -0.263 4.263 15 H 0.078 0.922 16 C -0.050 4.050 17 N -0.935 5.935 18 Si 0.965 3.035 19 H -0.263 1.263 20 H -0.293 1.293 21 H -0.298 1.298 22 C 0.091 3.909 23 N -0.609 5.609 24 C 0.093 3.907 25 C -0.113 4.113 26 C -0.151 4.151 27 C 0.505 3.495 28 O -0.572 6.572 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.048 0.952 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.003 0.997 39 H 0.019 0.981 40 H 0.035 0.965 41 H 0.247 0.753 42 H 0.094 0.906 43 H 0.072 0.928 44 H 0.106 0.894 45 H 0.073 0.927 46 H 0.099 0.901 47 H 0.116 0.884 48 H 0.108 0.892 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.374 8.945 -17.083 23.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.168 4.168 3 C 0.044 3.956 4 H 0.156 0.844 5 C 0.297 3.703 6 O -0.446 6.446 7 N -0.345 5.345 8 C -0.005 4.005 9 C -0.181 4.181 10 C 0.058 3.942 11 H 0.098 0.902 12 N -0.318 5.318 13 C 0.030 3.970 14 C -0.393 4.393 15 H 0.096 0.904 16 C -0.245 4.245 17 N -0.582 5.582 18 Si 0.794 3.206 19 H -0.187 1.187 20 H -0.220 1.220 21 H -0.226 1.226 22 C -0.033 4.033 23 N -0.343 5.343 24 C -0.028 4.028 25 C -0.151 4.151 26 C -0.191 4.191 27 C 0.295 3.705 28 O -0.451 6.451 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.021 0.979 39 H 0.037 0.963 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.112 0.888 43 H 0.090 0.910 44 H 0.125 0.875 45 H 0.092 0.908 46 H 0.118 0.882 47 H 0.135 0.865 48 H 0.127 0.873 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.660 8.497 -17.571 23.265 hybrid contribution 0.760 -0.319 1.203 1.458 sum -11.901 8.178 -16.369 21.828 Atomic orbital electron populations 1.21648 0.91990 1.02735 1.02872 1.21774 0.99077 0.93321 1.02580 1.20868 0.89204 0.96778 0.88755 0.84404 1.21231 0.91914 0.76292 0.80888 1.90694 1.66139 1.49715 1.38059 1.48492 1.08078 1.68563 1.09416 1.21803 0.81423 1.00846 0.96439 1.23089 1.00674 1.01689 0.92624 1.21534 0.91361 0.96044 0.85230 0.90156 1.43994 1.81244 1.03367 1.03177 1.20537 0.97871 0.83014 0.95598 1.19604 1.41254 0.94484 0.83941 0.90424 1.25695 1.00118 0.97932 1.00769 1.70260 1.45965 1.16036 1.25904 0.85236 0.77199 0.78242 0.79919 1.18710 1.21991 1.22551 1.22914 0.96669 1.01758 0.81976 1.48191 1.51472 1.30155 1.04442 1.22472 0.94481 0.85835 0.99999 1.22613 0.97702 1.03048 0.91711 1.22361 1.00396 0.99080 0.97297 1.21656 0.78799 0.84409 0.85654 1.90673 1.38758 1.31168 1.84502 0.92229 0.91923 0.90544 0.93284 0.90387 0.91682 0.92720 0.91892 0.90507 0.97908 0.96256 0.94714 0.94355 0.88750 0.90984 0.87548 0.90824 0.88238 0.86531 0.87337 0.87763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.80 71.98 0.71 -1.54 16 2 C -0.13 -3.07 5.29 30.60 0.16 -2.90 16 3 C 0.15 3.65 2.06 44.25 0.09 3.74 16 4 H 0.14 2.49 7.11 -2.39 -0.02 2.48 16 5 C 0.51 16.78 6.96 87.66 0.61 17.39 16 6 O -0.57 -23.53 14.60 16.48 0.24 -23.29 16 7 N -0.61 -19.24 3.33 -811.79 -2.70 -21.94 16 8 C 0.12 3.82 6.87 86.73 0.60 4.42 16 9 C -0.14 -4.84 6.54 31.78 0.21 -4.63 16 10 C 0.17 6.07 3.54 46.38 0.16 6.24 16 11 H 0.08 2.90 7.93 -2.39 -0.02 2.88 16 12 N -0.60 -27.08 2.96 -695.01 -2.06 -29.13 16 13 C 0.17 7.98 7.83 127.77 1.00 8.98 16 14 C -0.26 -13.31 9.62 84.03 0.81 -12.50 16 15 H 0.08 3.76 7.85 -2.92 -0.02 3.74 16 16 C -0.05 -2.63 5.02 84.86 0.43 -2.20 16 17 N -0.94 -53.09 10.81 21.65 0.23 -52.86 16 18 Si 0.97 42.76 29.59 68.60 2.03 44.79 16 19 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 20 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 21 H -0.30 -13.47 7.11 99.48 0.71 -12.76 16 22 C 0.09 2.71 5.45 86.86 0.47 3.18 16 23 N -0.61 -13.36 2.16 -798.20 -1.72 -15.08 16 24 C 0.09 1.07 7.30 86.83 0.63 1.70 16 25 C -0.11 -0.83 7.18 31.65 0.23 -0.61 16 26 C -0.15 -2.37 6.86 30.59 0.21 -2.16 16 27 C 0.51 13.85 6.70 87.90 0.59 14.44 16 28 O -0.57 -22.22 14.91 16.49 0.25 -21.98 16 29 H 0.06 0.93 7.75 -2.39 -0.02 0.91 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.99 16 32 H 0.05 1.51 6.67 -2.39 -0.02 1.50 16 33 H 0.08 1.88 6.61 -2.39 -0.02 1.86 16 34 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 35 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.06 2.34 7.28 -2.39 -0.02 2.32 16 37 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.00 0.13 7.38 -2.39 -0.02 0.12 16 39 H 0.02 0.94 7.31 -2.39 -0.02 0.93 16 40 H 0.03 1.34 6.04 -2.38 -0.01 1.32 16 41 H 0.25 13.73 8.31 -92.70 -0.77 12.96 16 42 H 0.09 2.36 7.14 -2.39 -0.02 2.35 16 43 H 0.07 2.20 5.31 -2.39 -0.01 2.19 16 44 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 46 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 47 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 48 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 49 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -76.15 378.93 4.10 -72.05 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.93 Total: 13.90 kcal Atomic # 6 Polarization: 26.63 SS G_CDS: 6.90 Total: 33.53 kcal Atomic # 7 Polarization: -112.76 SS G_CDS: -6.25 Total: -119.01 kcal Atomic # 8 Polarization: -45.75 SS G_CDS: 0.49 Total: -45.27 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -76.15 4.10 -72.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980441499.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.397 kcal (2) G-P(sol) polarization free energy of solvation -76.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds