Wall clock time and date at job start Fri Apr 10 2020 18:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21279 * 119.99725 * 2 1 4 4 N 1.34772 * 119.99976 * 179.97438 * 2 1 3 5 5 C 1.46921 * 120.62983 * 174.40595 * 4 2 1 6 6 C 1.53196 * 108.77791 * 233.59024 * 5 4 2 7 7 C 1.53040 * 109.33646 * 305.34682 * 6 5 4 8 8 C 1.50697 * 109.45963 * 181.40341 * 7 6 5 9 9 O 1.21284 * 119.99921 * 334.85763 * 8 7 6 10 10 N 1.34775 * 119.99892 * 154.86591 * 8 7 6 11 11 C 1.47020 * 125.65405 * 4.50042 * 10 8 7 12 12 C 1.54327 * 107.27097 * 178.85006 * 11 10 8 13 13 H 1.08999 * 110.66791 * 96.51864 * 12 11 10 14 14 N 1.46496 * 110.85177 * 219.66966 * 12 11 10 15 15 C 1.36937 * 120.00342 * 268.69049 * 14 12 11 16 16 H 1.08003 * 119.99553 * 0.02562 * 15 14 12 17 17 C 1.38803 * 120.00303 * 179.97438 * 15 14 12 18 18 N 1.31624 * 120.00149 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00228 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.46658 * 60.00021 * 19 17 15 21 21 H 1.48499 * 109.46953 * 179.97438 * 19 17 15 22 22 H 1.48491 * 109.46944 * 300.00188 * 19 17 15 23 23 C 1.55162 * 103.01810 * 338.13999 * 12 11 10 24 24 C 1.47426 * 125.64661 * 184.80543 * 10 8 7 25 25 H 1.09000 * 110.36658 * 85.25226 * 24 10 8 26 26 C 1.52999 * 110.36910 * 323.04118 * 24 10 8 27 27 C 1.53109 * 109.50076 * 61.34925 * 7 6 5 28 28 C 1.46924 * 120.63341 * 354.38721 * 4 2 1 29 29 H 1.08998 * 109.46992 * 174.54066 * 1 2 3 30 30 H 1.08994 * 109.47328 * 294.54290 * 1 2 3 31 31 H 1.09003 * 109.46828 * 54.54801 * 1 2 3 32 32 H 1.09007 * 109.59002 * 113.80222 * 5 4 2 33 33 H 1.09002 * 109.59078 * 353.37485 * 5 4 2 34 34 H 1.08997 * 109.49752 * 65.31188 * 6 5 4 35 35 H 1.09003 * 109.49911 * 185.38295 * 6 5 4 36 36 H 1.09002 * 109.46409 * 301.36040 * 7 6 5 37 37 H 1.09003 * 109.87685 * 298.39630 * 11 10 8 38 38 H 1.09002 * 109.88211 * 59.55552 * 11 10 8 39 39 H 0.97006 * 119.99725 * 88.69290 * 14 12 11 40 40 H 0.96992 * 120.00190 * 180.02562 * 18 17 15 41 41 H 1.08999 * 111.00435 * 277.22896 * 23 12 11 42 42 H 1.09003 * 111.00287 * 153.37892 * 23 12 11 43 43 H 1.09002 * 109.47109 * 60.00099 * 26 24 10 44 44 H 1.09000 * 109.47450 * 179.97438 * 26 24 10 45 45 H 1.08997 * 109.47266 * 299.99986 * 26 24 10 46 46 H 1.09005 * 109.48633 * 178.69900 * 27 7 6 47 47 H 1.08988 * 109.51742 * 58.63103 * 27 7 6 48 48 H 1.09002 * 109.58590 * 246.20087 * 28 4 2 49 49 H 1.09003 * 109.58805 * 6.62459 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6448 -1.1864 -0.1227 6 6 4.0300 -2.1100 -1.2826 7 6 3.4002 -3.4876 -1.0641 8 6 3.8055 -4.4086 -2.1858 9 8 4.1155 -3.9500 -3.2650 10 7 3.8233 -5.7419 -1.9900 11 6 3.3846 -6.4348 -0.7697 12 6 3.5598 -7.9484 -1.0141 13 1 4.5062 -8.2977 -0.6013 14 7 2.4392 -8.7016 -0.4457 15 6 2.5126 -9.1746 0.8373 16 1 3.3966 -8.9919 1.4303 17 6 1.4506 -9.8877 1.3760 18 7 0.3731 -10.1099 0.6534 19 14 1.5505 -10.5323 3.1264 20 1 1.7304 -9.3942 4.0634 21 1 0.2965 -11.2542 3.4603 22 1 2.7036 -11.4600 3.2472 23 6 3.5637 -8.0544 -2.5621 24 6 4.2920 -6.7469 -2.9615 25 1 5.3716 -6.8750 -2.8838 26 6 3.9069 -6.3332 -4.3833 27 6 1.8752 -3.3541 -1.0379 28 6 1.4657 -2.4445 0.1247 29 1 -0.3633 -1.0230 -0.0978 30 1 -0.3633 0.4268 0.9347 31 1 -0.3633 0.5961 -0.8372 32 1 4.0846 -1.5589 0.8025 33 1 4.0081 -0.1783 -0.3224 34 1 3.6664 -1.6883 -2.2196 35 1 5.1148 -2.2085 -1.3246 36 1 3.7449 -3.8981 -0.1150 37 1 3.9969 -6.1204 0.0755 38 1 2.3358 -6.2118 -0.5736 39 1 1.6451 -8.8653 -0.9783 40 1 -0.3692 -10.6079 1.0299 41 1 2.5472 -8.0712 -2.9551 42 1 4.1231 -8.9297 -2.8923 43 1 4.3637 -5.3719 -4.6183 44 1 4.2603 -7.0851 -5.0888 45 1 2.8227 -6.2476 -4.4557 46 1 1.4261 -4.3384 -0.9054 47 1 1.5314 -2.9210 -1.9772 48 1 1.7276 -2.9196 1.0702 49 1 0.3909 -2.2665 0.0883 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989773593.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:23 Heat of formation + Delta-G solvation = -55.874955 kcal Electronic energy + Delta-G solvation = -28633.781625 eV Core-core repulsion = 24788.964206 eV Total energy + Delta-G solvation = -3844.817419 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.70649 -39.82007 -37.85292 -36.85672 -34.24782 -33.44236 -32.04658 -31.46777 -31.13135 -29.59055 -28.47840 -26.12842 -25.34693 -23.95062 -23.48371 -22.38571 -20.94506 -20.35045 -19.30368 -18.64353 -17.41718 -17.32502 -16.76179 -16.12172 -16.01095 -15.66198 -15.22678 -14.75361 -14.44717 -14.18877 -13.89970 -13.75527 -13.56850 -13.54487 -13.43534 -13.07401 -12.82598 -12.76315 -12.29667 -12.17333 -12.15027 -11.97735 -11.87009 -11.82564 -11.40633 -11.31334 -11.08168 -10.95144 -10.81459 -10.79182 -10.72337 -10.38161 -10.13268 -9.96586 -9.82676 -9.36602 -9.06774 -8.85487 -8.36481 -7.18374 -5.92832 -3.24287 2.42284 2.74532 2.78685 3.15852 3.33771 3.39375 3.40052 4.30189 4.41260 4.44245 4.49648 4.63446 4.82185 4.90222 4.96054 5.06111 5.07804 5.10768 5.16879 5.19346 5.25927 5.35820 5.43575 5.49296 5.51788 5.52755 5.61695 5.64584 5.66414 5.76635 5.80467 5.83983 5.89551 6.05980 6.07913 6.12041 6.15679 6.29267 6.36384 6.43414 6.46469 6.66719 6.80143 7.17519 7.54776 7.78494 7.95872 8.24284 8.35607 9.36490 9.89787 10.24654 11.28860 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.010883 B = 0.003595 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.190930 B = 7787.507667 C = 9669.297916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.514 3.486 3 O -0.553 6.553 4 N -0.612 5.612 5 C 0.111 3.889 6 C -0.113 4.113 7 C -0.103 4.103 8 C 0.533 3.467 9 O -0.548 6.548 10 N -0.608 5.608 11 C 0.073 3.927 12 C 0.172 3.828 13 H 0.067 0.933 14 N -0.712 5.712 15 C -0.252 4.252 16 H 0.072 0.928 17 C -0.006 4.006 18 N -0.929 5.929 19 Si 0.908 3.092 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.285 1.285 23 C -0.137 4.137 24 C 0.135 3.865 25 H 0.071 0.929 26 C -0.163 4.163 27 C -0.125 4.125 28 C 0.103 3.897 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.387 0.613 40 H 0.258 0.742 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.055 0.945 45 H 0.052 0.948 46 H 0.087 0.913 47 H 0.074 0.926 48 H 0.078 0.922 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.060 13.484 -3.479 14.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.303 3.697 3 O -0.431 6.431 4 N -0.346 5.346 5 C -0.011 4.011 6 C -0.152 4.152 7 C -0.124 4.124 8 C 0.322 3.678 9 O -0.427 6.427 10 N -0.342 5.342 11 C -0.053 4.053 12 C 0.060 3.940 13 H 0.085 0.915 14 N -0.352 5.352 15 C -0.383 4.383 16 H 0.090 0.910 17 C -0.203 4.203 18 N -0.576 5.576 19 Si 0.738 3.262 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.211 1.211 23 C -0.177 4.177 24 C 0.032 3.968 25 H 0.089 0.911 26 C -0.221 4.221 27 C -0.163 4.163 28 C -0.019 4.019 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.087 0.913 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.112 0.888 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.221 0.779 40 H 0.068 0.932 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.106 0.894 47 H 0.092 0.908 48 H 0.096 0.904 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.544 14.260 -3.858 15.192 hybrid contribution -0.327 -0.723 0.960 1.246 sum 3.217 13.537 -2.898 14.213 Atomic orbital electron populations 1.22047 0.91907 1.04802 1.05269 1.20804 0.90662 0.82995 0.75202 1.90699 1.70735 1.31132 1.50539 1.48220 1.07553 1.06313 1.72552 1.21628 0.79651 1.01551 0.98261 1.21751 1.01052 0.93171 0.99221 1.21278 0.97169 0.95470 0.98501 1.20166 0.77320 0.81314 0.89025 1.90597 1.50093 1.75651 1.26366 1.48662 1.62895 1.04815 1.17783 1.23341 0.99923 0.96593 0.85467 1.21163 0.93274 0.88488 0.91116 0.91488 1.42370 1.16315 1.62494 1.13998 1.19206 1.00946 1.28470 0.89637 0.91003 1.24760 0.96367 1.00761 0.98404 1.69645 1.06370 1.45054 1.36536 0.86275 0.76866 0.78718 0.84335 1.21130 1.21615 1.21120 1.23181 1.01115 0.95736 0.97619 1.21870 0.97931 0.87666 0.89328 0.91128 1.22192 1.01972 1.03088 0.94803 1.21876 0.93880 1.01076 0.99503 1.21953 0.97729 0.83339 0.98922 0.89658 0.88740 0.88745 0.91320 0.88766 0.90343 0.90361 0.88831 0.92341 0.90840 0.77859 0.93230 0.90577 0.90247 0.89669 0.92567 0.92882 0.89421 0.90757 0.90401 0.88468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.34 10.08 36.01 0.36 -0.98 16 2 C 0.51 5.86 7.79 -10.98 -0.09 5.77 16 3 O -0.55 -8.51 16.54 5.56 0.09 -8.41 16 4 N -0.61 -6.28 2.97 -172.77 -0.51 -6.79 16 5 C 0.11 1.15 6.42 -3.71 -0.02 1.12 16 6 C -0.11 -1.24 4.86 -26.61 -0.13 -1.37 16 7 C -0.10 -1.17 1.95 -91.70 -0.18 -1.35 16 8 C 0.53 7.66 6.78 -10.99 -0.07 7.59 16 9 O -0.55 -9.24 13.64 5.55 0.08 -9.16 16 10 N -0.61 -8.76 3.24 -163.05 -0.53 -9.29 16 11 C 0.07 1.11 6.03 -3.06 -0.02 1.09 16 12 C 0.17 2.98 3.60 -66.09 -0.24 2.74 16 13 H 0.07 1.17 8.09 -51.93 -0.42 0.75 16 14 N -0.71 -15.87 5.15 -51.65 -0.27 -16.13 16 15 C -0.25 -6.32 9.96 -15.06 -0.15 -6.47 16 16 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 17 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 18 N -0.93 -26.08 13.06 55.49 0.72 -25.35 16 19 Si 0.91 20.82 29.55 -169.99 -5.02 15.80 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 23 C -0.14 -2.05 6.14 -24.58 -0.15 -2.20 16 24 C 0.14 1.89 3.78 -66.42 -0.25 1.64 16 25 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 26 C -0.16 -2.23 8.71 37.16 0.32 -1.91 16 27 C -0.12 -1.27 5.35 -26.58 -0.14 -1.41 16 28 C 0.10 0.87 6.36 -3.71 -0.02 0.85 16 29 H 0.08 0.48 5.17 -51.93 -0.27 0.21 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 1.07 7.04 -51.93 -0.37 0.71 16 34 H 0.08 0.99 7.92 -51.93 -0.41 0.58 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.09 1.00 7.33 -51.93 -0.38 0.62 16 37 H 0.06 0.84 7.79 -51.93 -0.40 0.44 16 38 H 0.07 1.20 6.93 -51.93 -0.36 0.84 16 39 H 0.39 9.31 7.76 -40.82 -0.32 8.99 16 40 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.08 1.20 7.92 -51.93 -0.41 0.79 16 42 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.08 1.30 5.79 -51.93 -0.30 1.00 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16 46 H 0.09 0.95 7.04 -51.93 -0.37 0.58 16 47 H 0.07 0.81 8.14 -51.94 -0.42 0.39 16 48 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.10 0.63 5.06 -51.93 -0.26 0.37 16 LS Contribution 380.18 15.07 5.73 5.73 Total: -1.00 -31.23 380.18 -8.63 -39.86 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -8.04 Total: 8.89 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -0.88 Total: 4.87 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: -0.58 Total: -57.57 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: 0.17 Total: -17.58 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.23 -8.63 -39.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989773593.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.019 kcal (2) G-P(sol) polarization free energy of solvation -31.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds