Wall clock time and date at job start Fri Apr 10 2020 18:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21279 * 119.99725 * 2 1 4 4 N 1.34772 * 119.99976 * 179.97438 * 2 1 3 5 5 C 1.46921 * 120.62983 * 174.40595 * 4 2 1 6 6 C 1.53196 * 108.77791 * 233.59024 * 5 4 2 7 7 C 1.53040 * 109.33646 * 305.34682 * 6 5 4 8 8 C 1.50697 * 109.45963 * 181.40341 * 7 6 5 9 9 O 1.21284 * 119.99921 * 334.85763 * 8 7 6 10 10 N 1.34775 * 119.99892 * 154.86591 * 8 7 6 11 11 C 1.47020 * 125.65405 * 4.50042 * 10 8 7 12 12 C 1.54327 * 107.27097 * 178.85006 * 11 10 8 13 13 H 1.08999 * 110.66791 * 96.51864 * 12 11 10 14 14 N 1.46496 * 110.85177 * 219.66966 * 12 11 10 15 15 C 1.36937 * 120.00342 * 268.69049 * 14 12 11 16 16 H 1.08003 * 119.99553 * 0.02562 * 15 14 12 17 17 C 1.38803 * 120.00303 * 179.97438 * 15 14 12 18 18 N 1.31624 * 120.00149 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00228 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.46658 * 60.00021 * 19 17 15 21 21 H 1.48499 * 109.46953 * 179.97438 * 19 17 15 22 22 H 1.48491 * 109.46944 * 300.00188 * 19 17 15 23 23 C 1.55162 * 103.01810 * 338.13999 * 12 11 10 24 24 C 1.47426 * 125.64661 * 184.80543 * 10 8 7 25 25 H 1.09000 * 110.36658 * 85.25226 * 24 10 8 26 26 C 1.52999 * 110.36910 * 323.04118 * 24 10 8 27 27 C 1.53109 * 109.50076 * 61.34925 * 7 6 5 28 28 C 1.46924 * 120.63341 * 354.38721 * 4 2 1 29 29 H 1.08998 * 109.46992 * 174.54066 * 1 2 3 30 30 H 1.08994 * 109.47328 * 294.54290 * 1 2 3 31 31 H 1.09003 * 109.46828 * 54.54801 * 1 2 3 32 32 H 1.09007 * 109.59002 * 113.80222 * 5 4 2 33 33 H 1.09002 * 109.59078 * 353.37485 * 5 4 2 34 34 H 1.08997 * 109.49752 * 65.31188 * 6 5 4 35 35 H 1.09003 * 109.49911 * 185.38295 * 6 5 4 36 36 H 1.09002 * 109.46409 * 301.36040 * 7 6 5 37 37 H 1.09003 * 109.87685 * 298.39630 * 11 10 8 38 38 H 1.09002 * 109.88211 * 59.55552 * 11 10 8 39 39 H 0.97006 * 119.99725 * 88.69290 * 14 12 11 40 40 H 0.96992 * 120.00190 * 180.02562 * 18 17 15 41 41 H 1.08999 * 111.00435 * 277.22896 * 23 12 11 42 42 H 1.09003 * 111.00287 * 153.37892 * 23 12 11 43 43 H 1.09002 * 109.47109 * 60.00099 * 26 24 10 44 44 H 1.09000 * 109.47450 * 179.97438 * 26 24 10 45 45 H 1.08997 * 109.47266 * 299.99986 * 26 24 10 46 46 H 1.09005 * 109.48633 * 178.69900 * 27 7 6 47 47 H 1.08988 * 109.51742 * 58.63103 * 27 7 6 48 48 H 1.09002 * 109.58590 * 246.20087 * 28 4 2 49 49 H 1.09003 * 109.58805 * 6.62459 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6448 -1.1864 -0.1227 6 6 4.0300 -2.1100 -1.2826 7 6 3.4002 -3.4876 -1.0641 8 6 3.8055 -4.4086 -2.1858 9 8 4.1155 -3.9500 -3.2650 10 7 3.8233 -5.7419 -1.9900 11 6 3.3846 -6.4348 -0.7697 12 6 3.5598 -7.9484 -1.0141 13 1 4.5062 -8.2977 -0.6013 14 7 2.4392 -8.7016 -0.4457 15 6 2.5126 -9.1746 0.8373 16 1 3.3966 -8.9919 1.4303 17 6 1.4506 -9.8877 1.3760 18 7 0.3731 -10.1099 0.6534 19 14 1.5505 -10.5323 3.1264 20 1 1.7304 -9.3942 4.0634 21 1 0.2965 -11.2542 3.4603 22 1 2.7036 -11.4600 3.2472 23 6 3.5637 -8.0544 -2.5621 24 6 4.2920 -6.7469 -2.9615 25 1 5.3716 -6.8750 -2.8838 26 6 3.9069 -6.3332 -4.3833 27 6 1.8752 -3.3541 -1.0379 28 6 1.4657 -2.4445 0.1247 29 1 -0.3633 -1.0230 -0.0978 30 1 -0.3633 0.4268 0.9347 31 1 -0.3633 0.5961 -0.8372 32 1 4.0846 -1.5589 0.8025 33 1 4.0081 -0.1783 -0.3224 34 1 3.6664 -1.6883 -2.2196 35 1 5.1148 -2.2085 -1.3246 36 1 3.7449 -3.8981 -0.1150 37 1 3.9969 -6.1204 0.0755 38 1 2.3358 -6.2118 -0.5736 39 1 1.6451 -8.8653 -0.9783 40 1 -0.3692 -10.6079 1.0299 41 1 2.5472 -8.0712 -2.9551 42 1 4.1231 -8.9297 -2.8923 43 1 4.3637 -5.3719 -4.6183 44 1 4.2603 -7.0851 -5.0888 45 1 2.8227 -6.2476 -4.4557 46 1 1.4261 -4.3384 -0.9054 47 1 1.5314 -2.9210 -1.9772 48 1 1.7276 -2.9196 1.0702 49 1 0.3909 -2.2665 0.0883 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989773593.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:22 Heat of formation + Delta-G solvation = -75.385186 kcal Electronic energy + Delta-G solvation = -28634.627652 eV Core-core repulsion = 24788.964206 eV Total energy + Delta-G solvation = -3845.663446 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.72418 -40.84918 -39.01514 -37.93845 -35.91904 -34.41103 -33.24490 -32.90065 -32.14842 -30.30280 -30.03928 -27.09152 -26.53267 -25.70815 -24.31518 -23.50002 -22.00295 -21.68932 -20.22817 -19.69430 -19.18820 -18.22661 -17.94578 -17.28847 -16.89728 -16.67133 -16.49491 -16.14175 -15.51875 -15.36839 -15.23944 -14.90102 -14.84350 -14.55454 -14.37731 -14.23680 -14.07042 -13.65462 -13.40969 -13.29994 -13.07713 -13.01461 -12.92676 -12.85969 -12.83069 -12.74209 -12.38273 -12.21536 -12.11968 -12.07596 -11.83326 -11.71895 -11.63267 -11.48886 -10.96406 -10.86733 -10.44279 -9.73610 -9.57656 -9.02481 -7.90594 -5.20375 1.54364 1.55221 1.56220 1.61147 1.61460 1.96489 2.05416 2.60408 3.34978 3.41253 3.54142 3.65655 3.78535 3.83317 3.90284 3.92168 4.01419 4.17113 4.21450 4.24498 4.32813 4.35636 4.39688 4.53067 4.54432 4.57431 4.65676 4.69364 4.72845 4.76550 4.78506 4.81819 4.89771 4.92825 5.05190 5.13832 5.14857 5.18101 5.22426 5.31089 5.36278 5.47506 5.57654 5.59249 6.29902 6.37069 6.60197 7.11165 7.19473 7.38166 8.09656 8.33430 9.31960 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.010883 B = 0.003595 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.190930 B = 7787.507667 C = 9669.297916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.505 3.495 3 O -0.601 6.601 4 N -0.612 5.612 5 C 0.113 3.887 6 C -0.103 4.103 7 C -0.098 4.098 8 C 0.530 3.470 9 O -0.575 6.575 10 N -0.608 5.608 11 C 0.087 3.913 12 C 0.165 3.835 13 H 0.071 0.929 14 N -0.723 5.723 15 C -0.242 4.242 16 H 0.081 0.919 17 C -0.066 4.066 18 N -0.967 5.967 19 Si 0.966 3.034 20 H -0.275 1.275 21 H -0.301 1.301 22 H -0.281 1.281 23 C -0.127 4.127 24 C 0.135 3.865 25 H 0.084 0.916 26 C -0.154 4.154 27 C -0.120 4.120 28 C 0.105 3.895 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.375 0.625 40 H 0.250 0.750 41 H 0.065 0.935 42 H 0.092 0.908 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.041 0.959 46 H 0.084 0.916 47 H 0.064 0.936 48 H 0.090 0.910 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.491 13.543 -2.524 14.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.297 3.703 3 O -0.483 6.483 4 N -0.345 5.345 5 C -0.009 4.009 6 C -0.142 4.142 7 C -0.120 4.120 8 C 0.320 3.680 9 O -0.455 6.455 10 N -0.341 5.341 11 C -0.038 4.038 12 C 0.054 3.946 13 H 0.089 0.911 14 N -0.362 5.362 15 C -0.374 4.374 16 H 0.099 0.901 17 C -0.259 4.259 18 N -0.617 5.617 19 Si 0.795 3.205 20 H -0.201 1.201 21 H -0.228 1.228 22 H -0.207 1.207 23 C -0.166 4.166 24 C 0.032 3.968 25 H 0.102 0.898 26 C -0.212 4.212 27 C -0.158 4.158 28 C -0.016 4.016 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.118 0.882 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.125 0.875 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.208 0.792 40 H 0.059 0.941 41 H 0.084 0.916 42 H 0.110 0.890 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.060 0.940 46 H 0.103 0.897 47 H 0.083 0.917 48 H 0.108 0.892 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.020 14.322 -2.906 15.156 hybrid contribution -0.369 -0.733 0.563 0.995 sum 3.651 13.588 -2.343 14.264 Atomic orbital electron populations 1.22080 0.88714 1.06396 1.06181 1.21547 0.92262 0.82422 0.74112 1.90675 1.71977 1.32787 1.52863 1.48345 1.07588 1.06842 1.71702 1.21585 0.80158 1.00589 0.98605 1.21631 1.01105 0.92948 0.98490 1.21308 0.98065 0.94828 0.97753 1.20666 0.76583 0.81358 0.89367 1.90596 1.51241 1.75984 1.27684 1.48685 1.62824 1.05057 1.17551 1.22985 0.99756 0.94965 0.86128 1.21347 0.91681 0.89072 0.92450 0.91148 1.42489 1.17164 1.63278 1.13258 1.19596 1.00574 1.26614 0.90570 0.90080 1.25451 0.96525 1.02202 1.01739 1.69793 1.07094 1.46776 1.37996 0.85333 0.76175 0.78211 0.80738 1.20140 1.22792 1.20733 1.23076 1.00912 0.96858 0.95719 1.21939 0.98492 0.86982 0.89416 0.89847 1.22090 1.01060 1.02923 0.95110 1.21831 0.92825 1.01260 0.99928 1.22095 0.98989 0.82044 0.98494 0.87567 0.87443 0.88236 0.89647 0.90221 0.92436 0.90111 0.87490 0.90910 0.91740 0.79211 0.94087 0.91630 0.88993 0.91164 0.90538 0.94009 0.89741 0.91732 0.89151 0.86041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 10.08 71.24 0.72 -1.48 16 2 C 0.51 10.98 7.79 87.66 0.68 11.66 16 3 O -0.60 -18.57 16.54 -3.03 -0.05 -18.62 16 4 N -0.61 -11.61 2.97 -818.90 -2.43 -14.04 16 5 C 0.11 2.22 6.42 86.36 0.55 2.77 16 6 C -0.10 -2.17 4.86 30.67 0.15 -2.02 16 7 C -0.10 -2.08 1.95 -11.49 -0.02 -2.10 16 8 C 0.53 14.63 6.78 87.66 0.59 15.22 16 9 O -0.57 -19.09 13.64 -3.04 -0.04 -19.13 16 10 N -0.61 -16.54 3.24 -788.16 -2.56 -19.09 16 11 C 0.09 2.49 6.03 86.73 0.52 3.01 16 12 C 0.16 5.43 3.60 46.18 0.17 5.60 16 13 H 0.07 2.30 8.09 -2.39 -0.02 2.28 16 14 N -0.72 -31.59 5.15 -317.33 -1.64 -33.23 16 15 C -0.24 -11.85 9.96 84.03 0.84 -11.01 16 16 H 0.08 3.75 7.83 -2.91 -0.02 3.73 16 17 C -0.07 -3.47 5.50 84.86 0.47 -3.00 16 18 N -0.97 -54.66 13.06 21.65 0.28 -54.37 16 19 Si 0.97 42.32 29.55 68.60 2.03 44.35 16 20 H -0.28 -11.50 7.11 99.48 0.71 -10.80 16 21 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 22 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 23 C -0.13 -3.58 6.14 31.99 0.20 -3.38 16 24 C 0.13 3.53 3.78 45.47 0.17 3.71 16 25 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 26 C -0.15 -4.03 8.71 71.98 0.63 -3.40 16 27 C -0.12 -2.24 5.35 30.69 0.16 -2.08 16 28 C 0.11 1.52 6.36 86.36 0.55 2.06 16 29 H 0.11 0.84 5.17 -2.39 -0.01 0.83 16 30 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.08 1.83 7.04 -2.39 -0.02 1.81 16 34 H 0.06 1.46 7.92 -2.39 -0.02 1.44 16 35 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.11 2.01 7.33 -2.39 -0.02 1.99 16 37 H 0.07 1.89 7.79 -2.39 -0.02 1.87 16 38 H 0.06 1.99 6.93 -2.39 -0.02 1.98 16 39 H 0.38 18.07 7.76 -92.70 -0.72 17.35 16 40 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 41 H 0.06 2.01 7.92 -2.39 -0.02 2.00 16 42 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.07 2.09 5.79 -2.39 -0.01 2.08 16 44 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.04 1.17 8.13 -2.39 -0.02 1.15 16 46 H 0.08 1.68 7.04 -2.38 -0.02 1.66 16 47 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 49 H 0.12 1.17 5.06 -2.39 -0.01 1.16 16 Total: -1.00 -67.58 380.18 2.20 -65.38 By element: Atomic # 1 Polarization: 32.98 SS G_CDS: 0.23 Total: 33.21 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: 6.38 Total: 15.55 kcal Atomic # 7 Polarization: -114.39 SS G_CDS: -6.34 Total: -120.73 kcal Atomic # 8 Polarization: -37.66 SS G_CDS: -0.09 Total: -37.75 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -67.58 2.20 -65.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989773593.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.009 kcal (2) G-P(sol) polarization free energy of solvation -67.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds