Wall clock time and date at job start Fri Apr 10 2020 18:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21277 * 120.00502 * 2 1 4 4 N 1.34779 * 119.99731 * 180.02562 * 2 1 3 5 5 C 1.46920 * 120.63117 * 4.75282 * 4 2 1 6 6 C 1.53198 * 108.77585 * 233.58887 * 5 4 2 7 7 C 1.53039 * 109.31119 * 305.36485 * 6 5 4 8 8 C 1.50700 * 109.46021 * 181.38705 * 7 6 5 9 9 O 1.21281 * 119.99558 * 274.96267 * 8 7 6 10 10 N 1.34770 * 120.00519 * 94.96405 * 8 7 6 11 11 C 1.47022 * 125.64588 * 355.21444 * 10 8 7 12 12 C 1.54319 * 107.27327 * 181.02610 * 11 10 8 13 13 H 1.09001 * 110.87262 * 263.75824 * 12 11 10 14 14 N 1.46499 * 110.72488 * 140.55510 * 12 11 10 15 15 C 1.36942 * 119.99998 * 91.47454 * 14 12 11 16 16 H 1.08001 * 119.99605 * 0.02562 * 15 14 12 17 17 C 1.38808 * 120.00080 * 180.02562 * 15 14 12 18 18 N 1.31617 * 120.00139 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99951 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47356 * 90.00028 * 19 17 15 21 21 H 1.48505 * 109.47244 * 330.00234 * 19 17 15 22 22 H 1.48496 * 109.47376 * 210.00515 * 19 17 15 23 23 C 1.55158 * 102.94306 * 22.19063 * 12 11 10 24 24 C 1.47425 * 125.65115 * 175.17821 * 10 8 7 25 25 H 1.09003 * 110.36450 * 274.74083 * 24 10 8 26 26 C 1.52992 * 110.46218 * 37.02009 * 24 10 8 27 27 C 1.53040 * 109.52568 * 61.37332 * 7 6 5 28 28 C 1.46928 * 120.62821 * 184.73353 * 4 2 1 29 29 H 1.08999 * 109.46721 * 264.62113 * 1 2 3 30 30 H 1.09000 * 109.47045 * 24.61960 * 1 2 3 31 31 H 1.09002 * 109.47701 * 144.62420 * 1 2 3 32 32 H 1.09004 * 109.58999 * 113.80345 * 5 4 2 33 33 H 1.09001 * 109.58913 * 353.37384 * 5 4 2 34 34 H 1.08999 * 109.49529 * 185.41443 * 6 5 4 35 35 H 1.08997 * 109.52603 * 65.33308 * 6 5 4 36 36 H 1.08998 * 109.45900 * 301.35810 * 7 6 5 37 37 H 1.09004 * 109.88151 * 61.60616 * 11 10 8 38 38 H 1.09002 * 109.88263 * 300.44141 * 11 10 8 39 39 H 0.96993 * 120.00546 * 271.48426 * 14 12 11 40 40 H 0.96998 * 119.99896 * 359.97438 * 18 17 15 41 41 H 1.09002 * 111.00140 * 82.57077 * 23 12 11 42 42 H 1.09000 * 111.00548 * 206.42665 * 23 12 11 43 43 H 1.08997 * 109.47318 * 176.91971 * 26 24 10 44 44 H 1.09010 * 109.47053 * 296.91906 * 26 24 10 45 45 H 1.09001 * 109.47268 * 56.91762 * 26 24 10 46 46 H 1.08996 * 109.50144 * 58.57733 * 27 7 6 47 47 H 1.09003 * 109.49415 * 178.67812 * 27 7 6 48 48 H 1.09001 * 109.58205 * 246.19414 * 28 4 2 49 49 H 1.08993 * 109.58822 * 6.48251 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 1.4640 -2.4454 -0.1058 6 6 1.8886 -3.3463 1.0582 7 6 3.4132 -3.4794 1.0651 8 6 3.8324 -4.3924 2.1884 9 8 3.9829 -3.9482 3.3068 10 7 4.0400 -5.7025 1.9502 11 6 3.7999 -6.3897 0.6728 12 6 4.1522 -7.8778 0.8797 13 1 5.1688 -8.0862 0.5462 14 7 3.1935 -8.7393 0.1833 15 6 3.4415 -9.1402 -1.1025 16 1 4.3440 -8.8216 -1.6028 17 6 2.5329 -9.9560 -1.7625 18 7 1.4328 -10.3438 -1.1528 19 14 2.8715 -10.5035 -3.5161 20 1 3.6278 -11.7813 -3.4985 21 1 3.6713 -9.4645 -4.2134 22 1 1.5846 -10.6998 -4.2306 23 6 4.0320 -8.0530 2.4167 24 6 4.5463 -6.6838 2.9270 25 1 5.6361 -6.6716 2.9469 26 6 3.9859 -6.3900 4.3199 27 6 4.0461 -2.1005 1.2657 28 6 3.6463 -1.1856 0.1038 29 1 -0.3633 -0.0963 1.0232 30 1 -0.3633 0.9342 -0.4281 31 1 -0.3634 -0.8379 -0.5949 32 1 1.7137 -2.9276 -1.0510 33 1 0.3898 -2.2670 -0.0568 34 1 1.4379 -4.3315 0.9389 35 1 1.5576 -2.9063 1.9989 36 1 3.7456 -3.8968 0.1147 37 1 4.4353 -5.9627 -0.1031 38 1 2.7513 -6.2928 0.3911 39 1 2.3831 -9.0256 0.6327 40 1 1.2571 -10.0599 -0.2421 41 1 2.9952 -8.2153 2.7114 42 1 4.6682 -8.8652 2.7683 43 1 4.3260 -7.1555 5.0173 44 1 4.3358 -5.4130 4.6537 45 1 2.8966 -6.3919 4.2811 46 1 3.6946 -1.6718 2.2041 47 1 5.1313 -2.1990 1.2940 48 1 4.0739 -1.5652 -0.8242 49 1 4.0122 -0.1757 0.2886 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989773594.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:28 Heat of formation + Delta-G solvation = -60.138672 kcal Electronic energy + Delta-G solvation = -28620.894698 eV Core-core repulsion = 24775.892390 eV Total energy + Delta-G solvation = -3845.002308 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.74066 -39.86705 -37.94075 -36.90120 -34.55144 -33.47161 -32.02762 -31.50742 -31.24822 -29.65142 -28.26619 -26.14960 -25.40447 -23.77839 -23.53482 -22.47935 -21.04948 -20.50354 -19.34549 -18.67889 -17.56329 -17.32273 -16.88365 -16.17134 -16.06045 -15.66081 -15.31163 -14.72579 -14.47874 -14.34089 -13.99366 -13.84209 -13.62258 -13.58794 -13.46775 -13.21198 -12.90985 -12.87702 -12.38686 -12.26736 -12.23056 -12.04076 -11.95231 -11.90761 -11.49615 -11.26498 -11.05355 -10.94628 -10.85999 -10.78094 -10.62213 -10.39189 -10.11096 -10.02617 -9.44724 -9.32312 -9.08635 -8.89147 -8.43353 -7.25744 -6.25814 -3.28959 2.38768 2.69030 2.74749 3.09493 3.43405 3.46883 3.61029 4.26212 4.38573 4.45024 4.54666 4.60894 4.77735 4.88732 4.91976 4.99226 5.01746 5.04703 5.09492 5.12126 5.21740 5.30804 5.36337 5.44434 5.48528 5.51211 5.54707 5.56671 5.59007 5.69970 5.73560 5.75787 5.84178 5.92731 5.96754 6.06034 6.06491 6.25411 6.27293 6.34197 6.38215 6.57696 6.70968 7.14006 7.64549 7.72513 7.92480 8.29594 8.59521 9.02842 9.89538 10.02756 11.21775 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.011166 B = 0.003503 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.054441 B = 7990.211227 C = 9773.028970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.514 3.486 3 O -0.551 6.551 4 N -0.613 5.613 5 C 0.106 3.894 6 C -0.122 4.122 7 C -0.103 4.103 8 C 0.534 3.466 9 O -0.547 6.547 10 N -0.609 5.609 11 C 0.075 3.925 12 C 0.177 3.823 13 H 0.069 0.931 14 N -0.724 5.724 15 C -0.342 4.342 16 H 0.067 0.933 17 C -0.039 4.039 18 N -0.939 5.939 19 Si 1.082 2.918 20 H -0.294 1.294 21 H -0.294 1.294 22 H -0.287 1.287 23 C -0.139 4.139 24 C 0.135 3.865 25 H 0.072 0.928 26 C -0.159 4.159 27 C -0.114 4.114 28 C 0.112 3.888 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.370 0.630 40 H 0.256 0.744 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.056 0.944 44 H 0.082 0.918 45 H 0.052 0.948 46 H 0.079 0.921 47 H 0.077 0.923 48 H 0.069 0.931 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.216 14.360 4.542 15.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.303 3.697 3 O -0.429 6.429 4 N -0.347 5.347 5 C -0.016 4.016 6 C -0.161 4.161 7 C -0.125 4.125 8 C 0.322 3.678 9 O -0.426 6.426 10 N -0.342 5.342 11 C -0.051 4.051 12 C 0.065 3.935 13 H 0.087 0.913 14 N -0.365 5.365 15 C -0.472 4.472 16 H 0.085 0.915 17 C -0.237 4.237 18 N -0.583 5.583 19 Si 0.912 3.088 20 H -0.222 1.222 21 H -0.220 1.220 22 H -0.213 1.213 23 C -0.178 4.178 24 C 0.032 3.968 25 H 0.090 0.910 26 C -0.217 4.217 27 C -0.153 4.153 28 C -0.011 4.011 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.204 0.796 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.075 0.925 44 H 0.101 0.899 45 H 0.071 0.929 46 H 0.097 0.903 47 H 0.096 0.904 48 H 0.087 0.913 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.187 14.361 3.704 14.878 hybrid contribution 0.375 0.526 1.293 1.445 sum 1.562 14.887 4.996 15.781 Atomic orbital electron populations 1.21983 0.91837 1.05041 1.04775 1.20813 0.90672 0.82961 0.75243 1.90701 1.70789 1.31110 1.50326 1.48196 1.07408 1.06238 1.72881 1.21865 0.97431 0.83443 0.98906 1.21825 0.93786 1.00890 0.99571 1.21273 0.97132 0.95577 0.98502 1.20176 0.76903 0.81125 0.89589 1.90611 1.52886 1.75245 1.23847 1.48684 1.64314 1.07206 1.14039 1.23275 1.01380 0.96392 0.84069 1.21100 0.94674 0.87669 0.90035 0.91298 1.42390 1.22718 1.57251 1.14131 1.20084 1.07035 1.29673 0.90444 0.91468 1.25796 0.94434 0.97564 1.05896 1.70867 1.26041 1.47454 1.13975 0.83213 0.75417 0.75737 0.74430 1.22178 1.22031 1.21309 1.23197 1.02013 0.95339 0.97270 1.21859 0.97780 0.87818 0.89326 0.91031 1.22141 1.01174 1.03178 0.95189 1.21766 1.00917 0.93195 0.99429 1.21620 0.79597 1.01600 0.98249 0.88791 0.88976 0.89648 0.90450 0.88803 0.89787 0.90631 0.88903 0.92228 0.91071 0.79630 0.93257 0.90774 0.90201 0.92491 0.89935 0.92890 0.90251 0.90413 0.91259 0.88692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.26 9.41 36.01 0.34 -0.92 16 2 C 0.51 5.77 7.80 -10.98 -0.09 5.68 16 3 O -0.55 -8.40 16.53 5.56 0.09 -8.31 16 4 N -0.61 -6.21 2.97 -172.77 -0.51 -6.72 16 5 C 0.11 0.88 6.27 -3.71 -0.02 0.86 16 6 C -0.12 -1.23 5.34 -26.61 -0.14 -1.37 16 7 C -0.10 -1.18 2.12 -91.73 -0.19 -1.37 16 8 C 0.53 7.69 6.67 -10.99 -0.07 7.61 16 9 O -0.55 -9.21 13.89 5.56 0.08 -9.14 16 10 N -0.61 -8.84 3.24 -163.05 -0.53 -9.37 16 11 C 0.07 1.16 5.90 -3.07 -0.02 1.15 16 12 C 0.18 3.13 3.61 -66.10 -0.24 2.89 16 13 H 0.07 1.24 8.09 -51.93 -0.42 0.82 16 14 N -0.72 -16.24 5.15 -51.65 -0.27 -16.50 16 15 C -0.34 -8.76 9.96 -15.06 -0.15 -8.91 16 16 H 0.07 1.70 7.83 -52.49 -0.41 1.28 16 17 C -0.04 -1.04 5.50 -17.43 -0.10 -1.14 16 18 N -0.94 -27.25 13.70 55.49 0.76 -26.49 16 19 Si 1.08 24.29 29.92 -169.99 -5.09 19.21 16 20 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 23 C -0.14 -2.08 6.13 -24.58 -0.15 -2.23 16 24 C 0.14 1.90 3.78 -66.42 -0.25 1.65 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 26 C -0.16 -2.16 8.59 37.15 0.32 -1.85 16 27 C -0.11 -1.24 4.99 -26.61 -0.13 -1.38 16 28 C 0.11 1.15 6.42 -3.71 -0.02 1.12 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.45 6.29 -51.93 -0.33 0.12 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.58 5.50 -51.93 -0.29 0.30 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.09 1.02 6.96 -51.93 -0.36 0.66 16 37 H 0.06 0.89 7.73 -51.93 -0.40 0.49 16 38 H 0.07 1.19 8.03 -51.93 -0.42 0.77 16 39 H 0.37 8.66 6.59 -40.82 -0.27 8.39 16 40 H 0.26 7.29 6.77 -40.82 -0.28 7.01 16 41 H 0.07 1.16 7.93 -51.93 -0.41 0.75 16 42 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.08 1.25 6.00 -51.92 -0.31 0.94 16 45 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.08 0.99 7.90 -51.93 -0.41 0.58 16 47 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.09 1.07 7.03 -51.93 -0.37 0.71 16 LS Contribution 381.42 15.07 5.75 5.75 Total: -1.00 -32.43 381.42 -8.75 -41.18 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -8.11 Total: 8.60 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -0.92 Total: 1.79 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: -0.55 Total: -59.08 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: 0.17 Total: -17.44 kcal Atomic # 14 Polarization: 24.29 SS G_CDS: -5.09 Total: 19.21 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.43 -8.75 -41.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989773594.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.957 kcal (2) G-P(sol) polarization free energy of solvation -32.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds