Wall clock time and date at job start Fri Apr 10 2020 18:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21277 * 120.00502 * 2 1 4 4 N 1.34779 * 119.99731 * 180.02562 * 2 1 3 5 5 C 1.46920 * 120.63117 * 4.75282 * 4 2 1 6 6 C 1.53198 * 108.77585 * 233.58887 * 5 4 2 7 7 C 1.53039 * 109.31119 * 305.36485 * 6 5 4 8 8 C 1.50700 * 109.46021 * 181.38705 * 7 6 5 9 9 O 1.21281 * 119.99558 * 274.96267 * 8 7 6 10 10 N 1.34770 * 120.00519 * 94.96405 * 8 7 6 11 11 C 1.47022 * 125.64588 * 355.21444 * 10 8 7 12 12 C 1.54319 * 107.27327 * 181.02610 * 11 10 8 13 13 H 1.09001 * 110.87262 * 263.75824 * 12 11 10 14 14 N 1.46499 * 110.72488 * 140.55510 * 12 11 10 15 15 C 1.36942 * 119.99998 * 91.47454 * 14 12 11 16 16 H 1.08001 * 119.99605 * 0.02562 * 15 14 12 17 17 C 1.38808 * 120.00080 * 180.02562 * 15 14 12 18 18 N 1.31617 * 120.00139 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99951 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47356 * 90.00028 * 19 17 15 21 21 H 1.48505 * 109.47244 * 330.00234 * 19 17 15 22 22 H 1.48496 * 109.47376 * 210.00515 * 19 17 15 23 23 C 1.55158 * 102.94306 * 22.19063 * 12 11 10 24 24 C 1.47425 * 125.65115 * 175.17821 * 10 8 7 25 25 H 1.09003 * 110.36450 * 274.74083 * 24 10 8 26 26 C 1.52992 * 110.46218 * 37.02009 * 24 10 8 27 27 C 1.53040 * 109.52568 * 61.37332 * 7 6 5 28 28 C 1.46928 * 120.62821 * 184.73353 * 4 2 1 29 29 H 1.08999 * 109.46721 * 264.62113 * 1 2 3 30 30 H 1.09000 * 109.47045 * 24.61960 * 1 2 3 31 31 H 1.09002 * 109.47701 * 144.62420 * 1 2 3 32 32 H 1.09004 * 109.58999 * 113.80345 * 5 4 2 33 33 H 1.09001 * 109.58913 * 353.37384 * 5 4 2 34 34 H 1.08999 * 109.49529 * 185.41443 * 6 5 4 35 35 H 1.08997 * 109.52603 * 65.33308 * 6 5 4 36 36 H 1.08998 * 109.45900 * 301.35810 * 7 6 5 37 37 H 1.09004 * 109.88151 * 61.60616 * 11 10 8 38 38 H 1.09002 * 109.88263 * 300.44141 * 11 10 8 39 39 H 0.96993 * 120.00546 * 271.48426 * 14 12 11 40 40 H 0.96998 * 119.99896 * 359.97438 * 18 17 15 41 41 H 1.09002 * 111.00140 * 82.57077 * 23 12 11 42 42 H 1.09000 * 111.00548 * 206.42665 * 23 12 11 43 43 H 1.08997 * 109.47318 * 176.91971 * 26 24 10 44 44 H 1.09010 * 109.47053 * 296.91906 * 26 24 10 45 45 H 1.09001 * 109.47268 * 56.91762 * 26 24 10 46 46 H 1.08996 * 109.50144 * 58.57733 * 27 7 6 47 47 H 1.09003 * 109.49415 * 178.67812 * 27 7 6 48 48 H 1.09001 * 109.58205 * 246.19414 * 28 4 2 49 49 H 1.08993 * 109.58822 * 6.48251 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 1.4640 -2.4454 -0.1058 6 6 1.8886 -3.3463 1.0582 7 6 3.4132 -3.4794 1.0651 8 6 3.8324 -4.3924 2.1884 9 8 3.9829 -3.9482 3.3068 10 7 4.0400 -5.7025 1.9502 11 6 3.7999 -6.3897 0.6728 12 6 4.1522 -7.8778 0.8797 13 1 5.1688 -8.0862 0.5462 14 7 3.1935 -8.7393 0.1833 15 6 3.4415 -9.1402 -1.1025 16 1 4.3440 -8.8216 -1.6028 17 6 2.5329 -9.9560 -1.7625 18 7 1.4328 -10.3438 -1.1528 19 14 2.8715 -10.5035 -3.5161 20 1 3.6278 -11.7813 -3.4985 21 1 3.6713 -9.4645 -4.2134 22 1 1.5846 -10.6998 -4.2306 23 6 4.0320 -8.0530 2.4167 24 6 4.5463 -6.6838 2.9270 25 1 5.6361 -6.6716 2.9469 26 6 3.9859 -6.3900 4.3199 27 6 4.0461 -2.1005 1.2657 28 6 3.6463 -1.1856 0.1038 29 1 -0.3633 -0.0963 1.0232 30 1 -0.3633 0.9342 -0.4281 31 1 -0.3634 -0.8379 -0.5949 32 1 1.7137 -2.9276 -1.0510 33 1 0.3898 -2.2670 -0.0568 34 1 1.4379 -4.3315 0.9389 35 1 1.5576 -2.9063 1.9989 36 1 3.7456 -3.8968 0.1147 37 1 4.4353 -5.9627 -0.1031 38 1 2.7513 -6.2928 0.3911 39 1 2.3831 -9.0256 0.6327 40 1 1.2571 -10.0599 -0.2421 41 1 2.9952 -8.2153 2.7114 42 1 4.6682 -8.8652 2.7683 43 1 4.3260 -7.1555 5.0173 44 1 4.3358 -5.4130 4.6537 45 1 2.8966 -6.3919 4.2811 46 1 3.6946 -1.6718 2.2041 47 1 5.1313 -2.1990 1.2940 48 1 4.0739 -1.5652 -0.8242 49 1 4.0122 -0.1757 0.2886 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989773594.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:27 Heat of formation + Delta-G solvation = -80.553728 kcal Electronic energy + Delta-G solvation = -28621.779961 eV Core-core repulsion = 24775.892390 eV Total energy + Delta-G solvation = -3845.887571 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.76757 -40.88826 -39.12002 -37.97898 -36.26896 -34.43609 -33.26161 -32.89236 -32.25388 -30.34517 -29.85714 -27.11583 -26.58461 -25.63014 -24.35430 -23.61041 -22.18155 -21.77362 -20.27624 -19.74641 -19.37874 -18.22330 -18.05545 -17.33446 -16.92869 -16.78795 -16.48257 -16.12681 -15.83093 -15.44254 -15.25120 -14.99493 -14.90980 -14.59256 -14.37534 -14.29822 -14.16383 -13.69414 -13.50354 -13.30813 -13.17165 -13.05915 -12.96016 -12.91662 -12.72774 -12.63481 -12.42352 -12.29542 -12.08134 -11.86656 -11.82515 -11.78035 -11.69275 -11.20022 -10.99993 -10.91441 -10.52516 -9.76319 -9.66016 -9.14700 -8.34115 -5.31323 1.53002 1.56304 1.64502 1.72906 1.86736 1.90650 2.01382 2.74101 3.26783 3.41018 3.49913 3.63015 3.69802 3.78896 3.80641 3.81361 3.97823 4.09782 4.13360 4.23682 4.25085 4.32313 4.40310 4.41796 4.44722 4.52956 4.57202 4.63004 4.67765 4.72266 4.73710 4.74664 4.80524 4.85655 4.99907 5.05000 5.07223 5.09762 5.14231 5.25057 5.25352 5.45077 5.48766 5.65885 6.35055 6.52075 6.53972 7.09013 7.09345 7.13489 7.99358 8.10627 9.17184 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.011166 B = 0.003503 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.054441 B = 7990.211227 C = 9773.028970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.505 3.495 3 O -0.600 6.600 4 N -0.613 5.613 5 C 0.109 3.891 6 C -0.118 4.118 7 C -0.099 4.099 8 C 0.531 3.469 9 O -0.573 6.573 10 N -0.609 5.609 11 C 0.090 3.910 12 C 0.170 3.830 13 H 0.069 0.931 14 N -0.735 5.735 15 C -0.330 4.330 16 H 0.072 0.928 17 C -0.097 4.097 18 N -0.976 5.976 19 Si 1.125 2.875 20 H -0.289 1.289 21 H -0.270 1.270 22 H -0.297 1.297 23 C -0.128 4.128 24 C 0.135 3.865 25 H 0.084 0.916 26 C -0.150 4.150 27 C -0.104 4.104 28 C 0.113 3.887 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.088 0.912 33 H 0.121 0.879 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.103 0.897 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.362 0.638 40 H 0.246 0.754 41 H 0.066 0.934 42 H 0.092 0.908 43 H 0.077 0.923 44 H 0.068 0.932 45 H 0.041 0.959 46 H 0.059 0.941 47 H 0.080 0.920 48 H 0.084 0.916 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.496 14.536 3.793 15.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.296 3.704 3 O -0.482 6.482 4 N -0.346 5.346 5 C -0.013 4.013 6 C -0.156 4.156 7 C -0.121 4.121 8 C 0.321 3.679 9 O -0.453 6.453 10 N -0.342 5.342 11 C -0.035 4.035 12 C 0.059 3.941 13 H 0.087 0.913 14 N -0.376 5.376 15 C -0.462 4.462 16 H 0.090 0.910 17 C -0.289 4.289 18 N -0.623 5.623 19 Si 0.950 3.050 20 H -0.217 1.217 21 H -0.195 1.195 22 H -0.224 1.224 23 C -0.166 4.166 24 C 0.032 3.968 25 H 0.102 0.898 26 C -0.208 4.208 27 C -0.143 4.143 28 C -0.009 4.009 29 H 0.126 0.874 30 H 0.113 0.887 31 H 0.128 0.872 32 H 0.107 0.893 33 H 0.139 0.861 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.121 0.879 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.195 0.805 40 H 0.057 0.943 41 H 0.084 0.916 42 H 0.110 0.890 43 H 0.096 0.904 44 H 0.087 0.913 45 H 0.060 0.940 46 H 0.078 0.922 47 H 0.099 0.901 48 H 0.102 0.898 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.504 14.548 2.978 14.926 hybrid contribution 0.368 0.486 1.635 1.745 sum 1.872 15.035 4.614 15.838 Atomic orbital electron populations 1.22017 0.88543 1.06298 1.06149 1.21580 0.92315 0.82353 0.74107 1.90677 1.72053 1.32789 1.52679 1.48322 1.07393 1.06810 1.72058 1.22010 0.98795 0.82120 0.98397 1.21792 0.92596 1.01191 1.00054 1.21307 0.98187 0.94993 0.97575 1.20677 0.76139 0.81120 0.89957 1.90609 1.53940 1.75584 1.25137 1.48708 1.64331 1.07476 1.13708 1.22895 1.00971 0.94948 0.84721 1.21281 0.93462 0.88016 0.91309 0.91342 1.42512 1.23308 1.58235 1.13555 1.20397 1.06376 1.27922 0.91460 0.91004 1.27014 0.94375 0.98529 1.09006 1.70969 1.27770 1.49699 1.13906 0.82645 0.75112 0.76181 0.71017 1.21655 1.19525 1.22367 1.23090 1.01927 0.96419 0.95204 1.21935 0.98446 0.87033 0.89429 0.89839 1.22037 1.00335 1.03075 0.95311 1.21651 1.01019 0.92884 0.98746 1.21569 0.80183 1.00657 0.98525 0.87408 0.88743 0.87185 0.89345 0.86125 0.89939 0.91536 0.87919 0.91081 0.92045 0.80525 0.94349 0.91568 0.88953 0.90409 0.91348 0.93985 0.92215 0.90113 0.89755 0.90104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 9.41 71.24 0.67 -1.37 16 2 C 0.51 10.78 7.80 87.66 0.68 11.46 16 3 O -0.60 -18.39 16.53 -3.02 -0.05 -18.44 16 4 N -0.61 -11.47 2.97 -818.90 -2.43 -13.90 16 5 C 0.11 1.52 6.27 86.37 0.54 2.06 16 6 C -0.12 -2.17 5.34 30.67 0.16 -2.01 16 7 C -0.10 -2.12 2.12 -11.51 -0.02 -2.15 16 8 C 0.53 14.72 6.67 87.66 0.58 15.31 16 9 O -0.57 -18.99 13.89 -3.03 -0.04 -19.03 16 10 N -0.61 -16.78 3.24 -788.18 -2.56 -19.34 16 11 C 0.09 2.66 5.90 86.73 0.51 3.17 16 12 C 0.17 5.73 3.61 46.18 0.17 5.89 16 13 H 0.07 2.34 8.09 -2.39 -0.02 2.32 16 14 N -0.74 -32.50 5.15 -317.33 -1.63 -34.14 16 15 C -0.33 -16.60 9.96 84.03 0.84 -15.76 16 16 H 0.07 3.49 7.83 -2.91 -0.02 3.47 16 17 C -0.10 -5.20 5.50 84.86 0.47 -4.73 16 18 N -0.98 -57.06 13.70 21.65 0.30 -56.76 16 19 Si 1.12 48.19 29.92 68.60 2.05 50.24 16 20 H -0.29 -12.05 7.11 99.48 0.71 -11.34 16 21 H -0.27 -10.39 7.11 99.48 0.71 -9.69 16 22 H -0.30 -13.11 7.11 99.48 0.71 -12.41 16 23 C -0.13 -3.62 6.13 31.99 0.20 -3.43 16 24 C 0.13 3.55 3.78 45.46 0.17 3.72 16 25 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 26 C -0.15 -3.88 8.59 71.98 0.62 -3.26 16 27 C -0.10 -2.19 4.99 30.67 0.15 -2.03 16 28 C 0.11 2.22 6.42 86.36 0.55 2.78 16 29 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.11 0.75 6.29 -2.39 -0.02 0.74 16 32 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.12 1.07 5.50 -2.39 -0.01 1.05 16 34 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.10 2.02 6.96 -2.39 -0.02 2.00 16 37 H 0.07 1.94 7.73 -2.39 -0.02 1.92 16 38 H 0.06 1.96 8.03 -2.39 -0.02 1.94 16 39 H 0.36 17.05 6.59 -92.71 -0.61 16.44 16 40 H 0.25 14.26 6.77 -92.71 -0.63 13.63 16 41 H 0.07 2.01 7.93 -2.39 -0.02 1.99 16 42 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.07 2.01 6.00 -2.38 -0.01 1.99 16 45 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.06 1.50 7.90 -2.39 -0.02 1.48 16 47 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.08 1.85 7.03 -2.39 -0.02 1.83 16 Total: -1.00 -70.43 381.42 2.40 -68.03 By element: Atomic # 1 Polarization: 33.20 SS G_CDS: 0.47 Total: 33.68 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 6.29 Total: 9.65 kcal Atomic # 7 Polarization: -117.81 SS G_CDS: -6.33 Total: -124.14 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -0.09 Total: -37.46 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 2.05 Total: 50.24 kcal Total: -70.43 2.40 -68.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989773594.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.526 kcal (2) G-P(sol) polarization free energy of solvation -70.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds