Wall clock time and date at job start Fri Apr 10 2020 18:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47450 * 2 1 4 4 N 1.46502 * 109.47219 * 120.00343 * 2 1 3 5 5 C 1.34418 * 124.34888 * 300.01909 * 4 2 1 6 6 O 1.21281 * 124.94184 * 0.41287 * 5 4 2 7 7 C 1.51280 * 110.11640 * 180.38920 * 5 4 2 8 8 C 1.54633 * 104.19555 * 16.25085 * 7 5 4 9 9 C 1.46765 * 124.35188 * 120.00222 * 4 2 1 10 10 H 1.09006 * 110.24775 * 43.90896 * 9 4 2 11 11 C 1.50707 * 110.24370 * 282.00471 * 9 4 2 12 12 O 1.21285 * 119.99449 * 359.97438 * 11 9 4 13 13 N 1.34773 * 120.00047 * 180.02562 * 11 9 4 14 14 C 1.46923 * 120.62750 * 179.97438 * 13 11 9 15 15 C 1.53196 * 108.77455 * 233.58193 * 14 13 11 16 16 C 1.53038 * 109.31164 * 305.36559 * 15 14 13 17 17 N 1.46505 * 109.45776 * 181.38342 * 16 15 14 18 18 C 1.36931 * 119.99788 * 155.00227 * 17 16 15 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 16 20 20 C 1.38817 * 119.99680 * 179.72358 * 18 17 16 21 21 N 1.31614 * 119.99888 * 0.27479 * 20 18 17 22 22 Si 1.86803 * 119.99862 * 180.27671 * 20 18 17 23 23 H 1.48508 * 109.46872 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 119.99997 * 22 20 18 25 25 H 1.48498 * 109.47018 * 240.00044 * 22 20 18 26 26 C 1.53045 * 109.53825 * 61.36664 * 16 15 14 27 27 C 1.46920 * 120.62930 * 359.97302 * 13 11 9 28 28 H 1.09005 * 109.46998 * 299.99846 * 1 2 3 29 29 H 1.09000 * 109.47516 * 59.99501 * 1 2 3 30 30 H 1.09002 * 109.47104 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47382 * 240.00324 * 2 1 3 32 32 H 1.09000 * 109.47144 * 180.02562 * 3 2 1 33 33 H 1.08992 * 109.47051 * 300.00432 * 3 2 1 34 34 H 1.09002 * 109.46665 * 60.00575 * 3 2 1 35 35 H 1.09001 * 110.49272 * 134.93179 * 7 5 4 36 36 H 1.09008 * 110.48609 * 257.44699 * 7 5 4 37 37 H 1.09000 * 110.97022 * 217.08480 * 8 7 5 38 38 H 1.09007 * 110.96368 * 93.32272 * 8 7 5 39 39 H 1.09007 * 109.58482 * 113.80056 * 14 13 11 40 40 H 1.08998 * 109.59242 * 353.37071 * 14 13 11 41 41 H 1.09000 * 109.49664 * 185.41723 * 15 14 13 42 42 H 1.09001 * 109.49178 * 65.31889 * 15 14 13 43 43 H 1.08991 * 109.46608 * 301.35544 * 16 15 14 44 44 H 0.97000 * 119.99792 * 335.00022 * 17 16 15 45 45 H 0.97005 * 119.99715 * 179.97438 * 21 20 18 46 46 H 1.09007 * 109.49596 * 58.57948 * 26 16 15 47 47 H 1.08994 * 109.49915 * 178.67709 * 26 16 15 48 48 H 1.09000 * 109.58989 * 246.19942 * 27 13 11 49 49 H 1.08992 * 109.59078 * 6.62976 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.7477 -0.3086 2.4561 6 8 1.0638 0.6454 2.7610 7 6 2.4198 -1.2422 3.4386 8 6 3.4719 -1.9927 2.5896 9 6 2.8656 -1.8888 1.1727 10 1 3.6557 -1.7777 0.4300 11 6 2.0347 -3.1092 0.8702 12 8 0.8404 -3.0000 0.6891 13 7 2.6186 -4.3220 0.8020 14 6 1.8217 -5.5210 0.5086 15 6 2.0766 -6.5624 1.6029 16 6 3.5810 -6.8197 1.7161 17 7 3.8260 -7.8395 2.7390 18 6 4.9625 -8.6016 2.6875 19 1 5.6784 -8.4506 1.8930 20 6 5.1975 -9.5639 3.6599 21 7 4.3253 -9.7475 4.6284 22 14 6.7516 -10.5983 3.5940 23 1 7.5619 -10.1996 2.4151 24 1 7.5413 -10.3846 4.8333 25 1 6.3867 -12.0332 3.4808 26 6 4.2939 -5.5233 2.1075 27 6 4.0640 -4.4702 1.0195 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6768 1.9563 0.8901 35 1 2.9047 -0.6752 4.2332 36 1 1.6956 -1.9412 3.8573 37 1 3.5557 -3.0334 2.9028 38 1 4.4398 -1.4934 2.6373 39 1 2.1163 -5.9279 -0.4588 40 1 0.7633 -5.2611 0.4910 41 1 1.5669 -7.4912 1.3470 42 1 1.6985 -6.1896 2.5549 43 1 3.9630 -7.1685 0.7568 44 1 3.1832 -7.9747 3.4527 45 1 4.4894 -10.4202 5.3077 46 1 3.8949 -5.1604 3.0548 47 1 5.3623 -5.7126 2.2109 48 1 4.5419 -4.7912 0.0940 49 1 4.4851 -3.5170 1.3390 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996914565.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:42 Heat of formation + Delta-G solvation = -53.358342 kcal Electronic energy + Delta-G solvation = -29043.802186 eV Core-core repulsion = 25199.093895 eV Total energy + Delta-G solvation = -3844.708290 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.38254 -39.57191 -37.48257 -36.33622 -35.32495 -34.51008 -32.16200 -31.10972 -30.22514 -29.46816 -28.13647 -27.28595 -25.07540 -23.30574 -23.08796 -22.56967 -22.23655 -20.66881 -19.27072 -18.72798 -17.53842 -17.13652 -16.97927 -16.29217 -15.59704 -15.21611 -15.03204 -14.87839 -14.32807 -14.10991 -13.96190 -13.89755 -13.77747 -13.53720 -13.50970 -13.29535 -13.06577 -12.77721 -12.41846 -12.23808 -12.03063 -11.97815 -11.76611 -11.62555 -11.55751 -11.34764 -11.26475 -11.05285 -10.95929 -10.88918 -10.56996 -10.26947 -10.02962 -9.89781 -9.75211 -9.71009 -9.00112 -8.83838 -8.61648 -7.05756 -5.84687 -3.14326 2.38783 2.46871 2.63651 3.07946 3.37166 3.42657 3.45356 4.04699 4.14550 4.25078 4.50861 4.54068 4.71640 4.81968 4.89611 4.97435 5.03688 5.12055 5.22775 5.24595 5.30135 5.42995 5.44496 5.45403 5.51593 5.52254 5.54859 5.61101 5.63623 5.64817 5.82548 5.85047 5.90387 5.98847 6.13070 6.21752 6.26882 6.29995 6.41356 6.45944 6.51561 6.79146 6.92682 6.94833 7.37221 7.61828 8.02281 8.11473 8.33311 9.44854 10.01777 10.36082 11.37752 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.025669 B = 0.002805 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.528871 B = 9978.749336 C =10291.166167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.158 3.842 3 C -0.166 4.166 4 N -0.592 5.592 5 C 0.526 3.474 6 O -0.528 6.528 7 C -0.158 4.158 8 C -0.129 4.129 9 C 0.114 3.886 10 H 0.112 0.888 11 C 0.501 3.499 12 O -0.532 6.532 13 N -0.602 5.602 14 C 0.117 3.883 15 C -0.139 4.139 16 C 0.179 3.821 17 N -0.724 5.724 18 C -0.241 4.241 19 H 0.071 0.929 20 C -0.012 4.012 21 N -0.931 5.931 22 Si 0.905 3.095 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.152 4.152 27 C 0.099 3.901 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.048 0.952 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.061 0.939 47 H 0.077 0.923 48 H 0.070 0.930 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.331 18.489 -9.729 20.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.057 3.943 3 C -0.224 4.224 4 N -0.326 5.326 5 C 0.315 3.685 6 O -0.405 6.405 7 C -0.198 4.198 8 C -0.167 4.167 9 C 0.006 3.994 10 H 0.129 0.871 11 C 0.287 3.713 12 O -0.409 6.409 13 N -0.336 5.336 14 C -0.006 4.006 15 C -0.178 4.178 16 C 0.069 3.931 17 N -0.364 5.364 18 C -0.372 4.372 19 H 0.089 0.911 20 C -0.209 4.209 21 N -0.579 5.579 22 Si 0.737 3.263 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.193 4.193 27 C -0.025 4.025 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.115 0.885 39 H 0.085 0.915 40 H 0.106 0.894 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.079 0.921 47 H 0.096 0.904 48 H 0.088 0.912 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.209 18.994 -9.779 21.478 hybrid contribution 0.829 -0.924 0.237 1.264 sum -1.380 18.071 -9.542 20.482 Atomic orbital electron populations 1.22181 0.94322 1.03680 1.02394 1.20892 0.95110 0.92341 0.85991 1.22194 1.01053 0.95885 1.03290 1.48111 1.51347 1.26513 1.06600 1.20778 0.79735 0.84465 0.83565 1.90683 1.39199 1.29250 1.81340 1.22395 0.99459 0.99356 0.98568 1.22828 0.98950 1.03746 0.91207 1.21610 0.92605 0.84525 1.00683 0.87070 1.20879 0.88571 0.84517 0.77366 1.90682 1.14943 1.85524 1.49701 1.48168 1.09317 1.06554 1.69519 1.21629 0.96613 0.84162 0.98175 1.22210 0.98725 0.98303 0.98554 1.20151 0.91302 0.88302 0.93347 1.42444 1.24807 1.39509 1.29669 1.19257 0.97806 1.12010 1.08138 0.91107 1.24758 0.98548 0.99907 0.97650 1.69669 1.35914 1.36751 1.15565 0.86148 0.82759 0.80233 0.77202 1.20539 1.21863 1.21870 1.22699 1.02786 0.96619 0.97195 1.22047 0.79545 1.00625 1.00237 0.91411 0.92135 0.90850 0.89923 0.92597 0.91471 0.91000 0.87589 0.87606 0.87688 0.88495 0.91511 0.89411 0.90532 0.91837 0.93394 0.78246 0.93489 0.92063 0.90420 0.91205 0.90117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 9.20 37.15 0.34 -1.60 16 2 C 0.16 1.64 3.33 -67.93 -0.23 1.41 16 3 C -0.17 -1.50 9.20 37.16 0.34 -1.15 16 4 N -0.59 -6.58 2.02 -158.67 -0.32 -6.90 16 5 C 0.53 6.71 7.41 -10.86 -0.08 6.63 16 6 O -0.53 -8.38 15.12 5.56 0.08 -8.29 16 7 C -0.16 -1.55 6.85 -26.74 -0.18 -1.73 16 8 C -0.13 -1.04 5.28 -25.10 -0.13 -1.17 16 9 C 0.11 1.07 2.53 -68.16 -0.17 0.90 16 10 H 0.11 0.77 7.87 -51.93 -0.41 0.36 16 11 C 0.50 6.17 7.07 -10.98 -0.08 6.09 16 12 O -0.53 -8.35 14.49 5.55 0.08 -8.27 16 13 N -0.60 -7.06 2.95 -172.79 -0.51 -7.57 16 14 C 0.12 1.49 6.43 -3.71 -0.02 1.47 16 15 C -0.14 -2.09 5.55 -26.61 -0.15 -2.24 16 16 C 0.18 3.10 2.73 -67.88 -0.19 2.91 16 17 N -0.72 -16.70 5.12 -53.38 -0.27 -16.98 16 18 C -0.24 -6.24 9.93 -15.06 -0.15 -6.39 16 19 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 21 N -0.93 -27.11 13.06 55.49 0.72 -26.38 16 22 Si 0.91 21.41 29.55 -169.99 -5.02 16.39 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 C -0.15 -2.15 5.52 -26.63 -0.15 -2.30 16 27 C 0.10 1.01 5.41 -3.73 -0.02 0.99 16 28 H 0.07 0.91 6.77 -51.93 -0.35 0.56 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 1.00 6.82 -51.93 -0.35 0.65 16 31 H 0.08 0.75 8.07 -51.93 -0.42 0.33 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.81 6.80 -51.93 -0.35 0.45 16 35 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.11 1.11 8.14 -51.92 -0.42 0.69 16 37 H 0.10 0.91 5.45 -51.93 -0.28 0.63 16 38 H 0.10 0.55 8.14 -51.92 -0.42 0.13 16 39 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 40 H 0.09 1.20 7.01 -51.93 -0.36 0.83 16 41 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.05 0.85 8.08 -51.93 -0.42 0.43 16 44 H 0.38 9.64 7.80 -40.82 -0.32 9.32 16 45 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 46 H 0.06 0.91 7.41 -51.93 -0.38 0.53 16 47 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 48 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 49 H 0.08 0.62 4.62 -51.93 -0.24 0.38 16 LS Contribution 377.98 15.07 5.70 5.70 Total: -1.00 -32.51 377.98 -8.59 -41.10 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -8.09 Total: 7.82 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -0.96 Total: 3.38 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: -0.38 Total: -57.82 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: 0.16 Total: -16.57 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.51 -8.59 -41.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996914565.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.255 kcal (2) G-P(sol) polarization free energy of solvation -32.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds