Wall clock time and date at job start Fri Apr 10 2020 18:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47450 * 2 1 4 4 N 1.46502 * 109.47219 * 120.00343 * 2 1 3 5 5 C 1.34418 * 124.34888 * 300.01909 * 4 2 1 6 6 O 1.21281 * 124.94184 * 0.41287 * 5 4 2 7 7 C 1.51280 * 110.11640 * 180.38920 * 5 4 2 8 8 C 1.54633 * 104.19555 * 16.25085 * 7 5 4 9 9 C 1.46765 * 124.35188 * 120.00222 * 4 2 1 10 10 H 1.09006 * 110.24775 * 43.90896 * 9 4 2 11 11 C 1.50707 * 110.24370 * 282.00471 * 9 4 2 12 12 O 1.21285 * 119.99449 * 359.97438 * 11 9 4 13 13 N 1.34773 * 120.00047 * 180.02562 * 11 9 4 14 14 C 1.46923 * 120.62750 * 179.97438 * 13 11 9 15 15 C 1.53196 * 108.77455 * 233.58193 * 14 13 11 16 16 C 1.53038 * 109.31164 * 305.36559 * 15 14 13 17 17 N 1.46505 * 109.45776 * 181.38342 * 16 15 14 18 18 C 1.36931 * 119.99788 * 155.00227 * 17 16 15 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 16 20 20 C 1.38817 * 119.99680 * 179.72358 * 18 17 16 21 21 N 1.31614 * 119.99888 * 0.27479 * 20 18 17 22 22 Si 1.86803 * 119.99862 * 180.27671 * 20 18 17 23 23 H 1.48508 * 109.46872 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 119.99997 * 22 20 18 25 25 H 1.48498 * 109.47018 * 240.00044 * 22 20 18 26 26 C 1.53045 * 109.53825 * 61.36664 * 16 15 14 27 27 C 1.46920 * 120.62930 * 359.97302 * 13 11 9 28 28 H 1.09005 * 109.46998 * 299.99846 * 1 2 3 29 29 H 1.09000 * 109.47516 * 59.99501 * 1 2 3 30 30 H 1.09002 * 109.47104 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47382 * 240.00324 * 2 1 3 32 32 H 1.09000 * 109.47144 * 180.02562 * 3 2 1 33 33 H 1.08992 * 109.47051 * 300.00432 * 3 2 1 34 34 H 1.09002 * 109.46665 * 60.00575 * 3 2 1 35 35 H 1.09001 * 110.49272 * 134.93179 * 7 5 4 36 36 H 1.09008 * 110.48609 * 257.44699 * 7 5 4 37 37 H 1.09000 * 110.97022 * 217.08480 * 8 7 5 38 38 H 1.09007 * 110.96368 * 93.32272 * 8 7 5 39 39 H 1.09007 * 109.58482 * 113.80056 * 14 13 11 40 40 H 1.08998 * 109.59242 * 353.37071 * 14 13 11 41 41 H 1.09000 * 109.49664 * 185.41723 * 15 14 13 42 42 H 1.09001 * 109.49178 * 65.31889 * 15 14 13 43 43 H 1.08991 * 109.46608 * 301.35544 * 16 15 14 44 44 H 0.97000 * 119.99792 * 335.00022 * 17 16 15 45 45 H 0.97005 * 119.99715 * 179.97438 * 21 20 18 46 46 H 1.09007 * 109.49596 * 58.57948 * 26 16 15 47 47 H 1.08994 * 109.49915 * 178.67709 * 26 16 15 48 48 H 1.09000 * 109.58989 * 246.19942 * 27 13 11 49 49 H 1.08992 * 109.59078 * 6.62976 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.7477 -0.3086 2.4561 6 8 1.0638 0.6454 2.7610 7 6 2.4198 -1.2422 3.4386 8 6 3.4719 -1.9927 2.5896 9 6 2.8656 -1.8888 1.1727 10 1 3.6557 -1.7777 0.4300 11 6 2.0347 -3.1092 0.8702 12 8 0.8404 -3.0000 0.6891 13 7 2.6186 -4.3220 0.8020 14 6 1.8217 -5.5210 0.5086 15 6 2.0766 -6.5624 1.6029 16 6 3.5810 -6.8197 1.7161 17 7 3.8260 -7.8395 2.7390 18 6 4.9625 -8.6016 2.6875 19 1 5.6784 -8.4506 1.8930 20 6 5.1975 -9.5639 3.6599 21 7 4.3253 -9.7475 4.6284 22 14 6.7516 -10.5983 3.5940 23 1 7.5619 -10.1996 2.4151 24 1 7.5413 -10.3846 4.8333 25 1 6.3867 -12.0332 3.4808 26 6 4.2939 -5.5233 2.1075 27 6 4.0640 -4.4702 1.0195 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6768 1.9563 0.8901 35 1 2.9047 -0.6752 4.2332 36 1 1.6956 -1.9412 3.8573 37 1 3.5557 -3.0334 2.9028 38 1 4.4398 -1.4934 2.6373 39 1 2.1163 -5.9279 -0.4588 40 1 0.7633 -5.2611 0.4910 41 1 1.5669 -7.4912 1.3470 42 1 1.6985 -6.1896 2.5549 43 1 3.9630 -7.1685 0.7568 44 1 3.1832 -7.9747 3.4527 45 1 4.4894 -10.4202 5.3077 46 1 3.8949 -5.1604 3.0548 47 1 5.3623 -5.7126 2.2109 48 1 4.5419 -4.7912 0.0940 49 1 4.4851 -3.5170 1.3390 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996914565.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:41 Heat of formation + Delta-G solvation = -74.299404 kcal Electronic energy + Delta-G solvation = -29044.710258 eV Core-core repulsion = 25199.093895 eV Total energy + Delta-G solvation = -3845.616363 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.27189 -40.58658 -38.68297 -37.32589 -36.30522 -35.85631 -33.79176 -32.23425 -31.05126 -30.98002 -29.11227 -28.10316 -26.55622 -24.67073 -24.15272 -23.45999 -23.21094 -21.84786 -20.37917 -19.66213 -19.02092 -18.43687 -17.84105 -17.27929 -16.72067 -16.42969 -16.12831 -16.02053 -15.44401 -15.36275 -15.17966 -14.99770 -14.87142 -14.69303 -14.57919 -14.34096 -13.97854 -13.76177 -13.66886 -13.25958 -13.05370 -13.00110 -12.85376 -12.77882 -12.56275 -12.50595 -12.35815 -12.17098 -12.12588 -12.07454 -12.04857 -11.95458 -11.65050 -11.25026 -11.02726 -10.84135 -10.66084 -9.74340 -9.64243 -8.96338 -7.90005 -5.18029 1.44149 1.50849 1.51572 1.53986 1.60954 1.80004 2.17337 2.59860 3.24812 3.40103 3.43076 3.44979 3.84334 3.86012 3.94571 3.98608 4.09676 4.13575 4.14465 4.23892 4.28599 4.40899 4.43485 4.47321 4.68046 4.69530 4.73713 4.74530 4.82635 4.85098 4.87918 4.90264 4.92102 4.94315 4.97517 5.09373 5.13793 5.21280 5.32523 5.37318 5.55285 5.59620 5.63376 5.69732 6.06797 6.31942 6.43667 7.08745 7.17770 7.38181 8.15120 8.36700 9.33936 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.025669 B = 0.002805 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.528871 B = 9978.749336 C =10291.166167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.151 3.849 3 C -0.157 4.157 4 N -0.591 5.591 5 C 0.514 3.486 6 O -0.570 6.570 7 C -0.158 4.158 8 C -0.120 4.120 9 C 0.114 3.886 10 H 0.153 0.847 11 C 0.499 3.501 12 O -0.572 6.572 13 N -0.600 5.600 14 C 0.125 3.875 15 C -0.128 4.128 16 C 0.172 3.828 17 N -0.739 5.739 18 C -0.228 4.228 19 H 0.082 0.918 20 C -0.080 4.080 21 N -0.973 5.973 22 Si 0.967 3.033 23 H -0.261 1.261 24 H -0.297 1.297 25 H -0.301 1.301 26 C -0.142 4.142 27 C 0.107 3.893 28 H 0.040 0.960 29 H 0.081 0.919 30 H 0.048 0.952 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.043 0.957 35 H 0.122 0.878 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.134 0.866 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.048 0.952 43 H 0.049 0.951 44 H 0.369 0.631 45 H 0.248 0.752 46 H 0.051 0.949 47 H 0.071 0.929 48 H 0.090 0.910 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.308 19.884 -11.885 23.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.050 3.950 3 C -0.215 4.215 4 N -0.323 5.323 5 C 0.303 3.697 6 O -0.450 6.450 7 C -0.198 4.198 8 C -0.158 4.158 9 C 0.007 3.993 10 H 0.170 0.830 11 C 0.286 3.714 12 O -0.451 6.451 13 N -0.333 5.333 14 C 0.002 3.998 15 C -0.167 4.167 16 C 0.064 3.936 17 N -0.378 5.378 18 C -0.360 4.360 19 H 0.100 0.900 20 C -0.272 4.272 21 N -0.625 5.625 22 Si 0.798 3.202 23 H -0.185 1.185 24 H -0.225 1.225 25 H -0.228 1.228 26 C -0.182 4.182 27 C -0.015 4.015 28 H 0.059 0.941 29 H 0.100 0.900 30 H 0.067 0.933 31 H 0.122 0.878 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.063 0.937 35 H 0.141 0.859 36 H 0.110 0.890 37 H 0.120 0.880 38 H 0.153 0.847 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.200 0.800 45 H 0.057 0.943 46 H 0.070 0.930 47 H 0.089 0.911 48 H 0.108 0.892 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.471 20.414 -12.004 23.686 hybrid contribution -0.099 -1.333 0.841 1.580 sum 0.372 19.080 -11.163 22.109 Atomic orbital electron populations 1.22101 0.95882 1.01853 1.02102 1.21070 0.93968 0.93503 0.86482 1.22106 1.01903 0.94666 1.02790 1.48249 1.51014 1.26652 1.06347 1.21316 0.79358 0.84281 0.84698 1.90657 1.41003 1.31177 1.82123 1.22422 0.99723 0.98864 0.98768 1.22912 0.99800 1.03622 0.89416 1.21881 0.92505 0.82221 1.02705 0.82954 1.21472 0.88327 0.85298 0.76302 1.90687 1.16889 1.86103 1.51383 1.48204 1.09871 1.06080 1.69119 1.21461 0.96499 0.84032 0.97835 1.22058 0.97150 0.98706 0.98800 1.20440 0.92923 0.88460 0.91769 1.42699 1.23821 1.40863 1.30458 1.19666 0.98120 1.10956 1.07238 0.90027 1.25523 1.01564 1.01989 0.98101 1.69829 1.38021 1.37887 1.16721 0.85149 0.79657 0.78037 0.77401 1.18502 1.22480 1.22837 1.22459 1.01572 0.95887 0.98324 1.22124 0.78657 1.01085 0.99674 0.94087 0.90029 0.93297 0.87846 0.91031 0.89706 0.93734 0.85933 0.88971 0.88038 0.84741 0.89736 0.90449 0.91565 0.93330 0.93257 0.79984 0.94335 0.92977 0.91064 0.89169 0.86433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.72 9.20 71.98 0.66 -3.05 16 2 C 0.15 2.82 3.33 44.99 0.15 2.97 16 3 C -0.16 -2.48 9.20 71.98 0.66 -1.82 16 4 N -0.59 -11.89 2.02 -774.52 -1.57 -13.46 16 5 C 0.51 12.73 7.41 87.90 0.65 13.38 16 6 O -0.57 -18.51 15.12 -3.03 -0.05 -18.55 16 7 C -0.16 -2.85 6.85 30.59 0.21 -2.64 16 8 C -0.12 -1.45 5.28 31.65 0.17 -1.28 16 9 C 0.11 1.71 2.53 44.70 0.11 1.83 16 10 H 0.15 1.14 7.87 -2.38 -0.02 1.12 16 11 C 0.50 11.04 7.07 87.66 0.62 11.66 16 12 O -0.57 -17.53 14.49 -3.04 -0.04 -17.57 16 13 N -0.60 -12.34 2.95 -818.99 -2.41 -14.75 16 14 C 0.12 3.00 6.43 86.36 0.56 3.56 16 15 C -0.13 -3.81 5.55 30.67 0.17 -3.64 16 16 C 0.17 5.73 2.73 45.02 0.12 5.85 16 17 N -0.74 -34.13 5.12 -322.81 -1.65 -35.79 16 18 C -0.23 -11.65 9.93 84.04 0.83 -10.82 16 19 H 0.08 3.93 7.83 -2.91 -0.02 3.90 16 20 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 21 N -0.97 -57.98 13.06 21.65 0.28 -57.69 16 22 Si 0.97 44.04 29.55 68.60 2.03 46.07 16 23 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 24 H -0.30 -13.67 7.11 99.48 0.71 -12.97 16 25 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 26 C -0.14 -3.66 5.52 30.66 0.17 -3.50 16 27 C 0.11 1.73 5.41 86.35 0.47 2.20 16 28 H 0.04 1.15 6.77 -2.38 -0.02 1.13 16 29 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.05 1.36 6.82 -2.39 -0.02 1.34 16 31 H 0.10 1.52 8.07 -2.39 -0.02 1.50 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.04 0.97 6.80 -2.39 -0.02 0.95 16 35 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 37 H 0.10 1.38 5.45 -2.39 -0.01 1.36 16 38 H 0.13 0.72 8.14 -2.38 -0.02 0.70 16 39 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 40 H 0.08 2.07 7.01 -2.39 -0.02 2.06 16 41 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.05 1.64 8.08 -2.39 -0.02 1.62 16 44 H 0.37 19.01 7.80 -92.71 -0.72 18.28 16 45 H 0.25 14.44 8.31 -92.70 -0.77 13.67 16 46 H 0.05 1.45 7.41 -2.38 -0.02 1.44 16 47 H 0.07 1.97 8.14 -2.39 -0.02 1.96 16 48 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.12 1.11 4.62 -2.39 -0.01 1.09 16 Total: -1.00 -74.54 377.98 2.84 -71.70 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: 0.23 Total: 29.25 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: 6.02 Total: 10.79 kcal Atomic # 7 Polarization: -116.34 SS G_CDS: -5.35 Total: -121.69 kcal Atomic # 8 Polarization: -36.04 SS G_CDS: -0.09 Total: -36.13 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -74.54 2.84 -71.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996914565.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.595 kcal (2) G-P(sol) polarization free energy of solvation -74.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds