Wall clock time and date at job start Fri Apr 10 2020 18:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47195 * 2 1 4 4 N 1.46502 * 109.47349 * 179.97438 * 3 2 1 5 5 C 1.46820 * 124.33555 * 269.98686 * 4 3 2 6 6 C 1.54481 * 105.44046 * 196.99736 * 5 4 3 7 7 H 1.09005 * 110.96859 * 92.77139 * 6 5 4 8 8 C 1.50701 * 110.96799 * 216.49010 * 6 5 4 9 9 O 1.21285 * 119.99961 * 356.92052 * 8 6 5 10 10 N 1.34778 * 120.00015 * 176.91153 * 8 6 5 11 11 C 1.46923 * 120.62857 * 180.02562 * 10 8 6 12 12 C 1.53196 * 108.77455 * 233.62844 * 11 10 8 13 13 C 1.53038 * 109.31164 * 305.36559 * 12 11 10 14 14 N 1.46505 * 109.45776 * 181.38342 * 13 12 11 15 15 C 1.36931 * 119.99788 * 155.00227 * 14 13 12 16 16 H 1.08002 * 120.00438 * 0.02562 * 15 14 13 17 17 C 1.38817 * 119.99680 * 179.72358 * 15 14 13 18 18 N 1.31614 * 119.99888 * 0.27479 * 17 15 14 19 19 Si 1.86803 * 119.99862 * 180.27671 * 17 15 14 20 20 H 1.48496 * 109.47141 * 59.99751 * 19 17 15 21 21 H 1.48490 * 109.47071 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46993 * 300.00028 * 19 17 15 23 23 C 1.53045 * 109.53825 * 61.36664 * 13 12 11 24 24 C 1.46920 * 120.62823 * 0.02562 * 10 8 6 25 25 C 1.54626 * 101.80149 * 334.63232 * 6 5 4 26 26 C 1.34418 * 124.34552 * 90.02592 * 4 3 2 27 27 O 1.21283 * 124.94439 * 359.62437 * 26 4 3 28 28 H 1.08994 * 109.47130 * 300.00163 * 1 2 3 29 29 H 1.09002 * 109.46963 * 60.00363 * 1 2 3 30 30 H 1.09004 * 109.46862 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47130 * 239.99837 * 2 1 3 32 32 H 1.08997 * 109.46623 * 120.00283 * 2 1 3 33 33 H 1.09004 * 109.46715 * 59.99880 * 3 2 1 34 34 H 1.08996 * 109.47137 * 300.00017 * 3 2 1 35 35 H 1.09003 * 110.23386 * 78.02365 * 5 4 3 36 36 H 1.09001 * 110.28271 * 316.00227 * 5 4 3 37 37 H 1.09007 * 109.58482 * 113.84707 * 11 10 8 38 38 H 1.08998 * 109.59242 * 353.41722 * 11 10 8 39 39 H 1.09000 * 109.49664 * 185.41723 * 12 11 10 40 40 H 1.09004 * 109.51858 * 65.33456 * 12 11 10 41 41 H 1.08991 * 109.46608 * 301.35544 * 13 12 11 42 42 H 0.97000 * 119.99792 * 335.00022 * 14 13 12 43 43 H 0.97005 * 119.99715 * 179.97438 * 18 17 15 44 44 H 1.09007 * 109.49596 * 58.57948 * 23 13 12 45 45 H 1.08994 * 109.49915 * 178.67709 * 23 13 12 46 46 H 1.09000 * 109.58989 * 246.15291 * 24 10 8 47 47 H 1.08996 * 109.59147 * 6.44057 * 24 10 8 48 48 H 1.08996 * 110.48919 * 143.45895 * 25 6 5 49 49 H 1.09004 * 110.48294 * 266.10352 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.3327 1.4430 1.2133 6 6 5.7407 1.8781 0.7502 7 1 5.8672 2.9565 0.8466 8 6 6.8111 1.1420 1.5141 9 8 6.5038 0.3739 2.4009 10 7 8.1100 1.3372 1.2116 11 6 9.1648 0.6264 1.9470 12 6 10.1654 1.6524 2.4883 13 6 10.6774 2.5176 1.3345 14 7 11.6594 3.4783 1.8434 15 6 12.6123 3.9923 1.0050 16 1 12.6396 3.6899 -0.0314 17 6 13.5393 4.9070 1.4858 18 7 13.5056 5.2759 2.7488 19 14 14.8343 5.6141 0.3403 20 1 14.1687 6.3313 -0.7767 21 1 15.6970 6.5602 1.0925 22 1 15.6672 4.5124 -0.2054 23 6 9.5059 3.2726 0.7021 24 6 8.4978 2.2647 0.1402 25 6 5.7301 1.4530 -0.7364 26 6 4.2639 1.4428 -1.1089 27 8 3.8355 1.4366 -2.2435 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9562 0.8900 34 1 1.6767 1.9562 -0.8899 35 1 4.3699 0.4426 1.6447 36 1 3.9382 2.1534 1.9398 37 1 9.6762 -0.0640 1.2762 38 1 8.7233 0.0738 2.7763 39 1 11.0034 1.1330 2.9532 40 1 9.6742 2.2852 3.2276 41 1 11.1467 1.8816 0.5841 42 1 11.6346 3.7502 2.7742 43 1 14.1536 5.9148 3.0848 44 1 9.0205 3.8901 1.4579 45 1 9.8746 3.9065 -0.1044 46 1 8.9550 1.7077 -0.6777 47 1 7.6159 2.7912 -0.2244 48 1 6.2731 2.1768 -1.3441 49 1 6.1598 0.4579 -0.8517 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997044379.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:50 Heat of formation + Delta-G solvation = -83.976692 kcal Electronic energy + Delta-G solvation = -27941.117799 eV Core-core repulsion = 24095.081797 eV Total energy + Delta-G solvation = -3846.036002 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.07481 -40.69884 -38.77909 -37.47100 -36.17594 -35.80443 -33.87648 -32.78787 -31.69323 -30.91749 -28.80251 -27.45775 -26.55516 -24.85807 -24.27946 -23.28240 -22.70934 -21.48315 -20.59205 -19.94360 -19.07153 -18.50713 -17.84339 -17.34128 -16.84734 -16.66411 -16.20094 -16.07696 -15.62105 -15.45325 -15.37514 -15.00535 -14.88263 -14.71709 -14.61632 -14.48380 -14.08964 -13.83428 -13.60654 -13.25560 -13.09581 -13.02858 -12.80180 -12.74631 -12.66610 -12.50830 -12.37767 -12.22119 -12.20029 -12.11715 -11.95027 -11.67225 -11.66011 -11.26888 -11.17138 -10.89765 -10.67495 -9.77970 -9.66229 -8.97671 -7.91197 -5.19287 1.45298 1.49861 1.51815 1.52572 1.57762 1.82003 2.07890 2.58649 3.09469 3.29075 3.42242 3.55562 3.81921 3.86976 3.89683 3.99535 4.03173 4.10464 4.12368 4.22946 4.32800 4.39141 4.45655 4.48921 4.52637 4.60462 4.64133 4.67933 4.71514 4.84913 4.87916 4.88461 4.89666 4.93563 5.07189 5.12454 5.13723 5.16486 5.31825 5.35074 5.52262 5.54476 5.57103 5.66413 6.02539 6.30584 6.40212 7.04855 7.09806 7.36886 8.13925 8.35728 9.32118 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.026419 B = 0.002352 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.600406 B =11903.552233 C =12480.058058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.138 4.138 3 C 0.121 3.879 4 N -0.615 5.615 5 C 0.120 3.880 6 C -0.115 4.115 7 H 0.141 0.859 8 C 0.529 3.471 9 O -0.573 6.573 10 N -0.601 5.601 11 C 0.123 3.877 12 C -0.128 4.128 13 C 0.171 3.829 14 N -0.739 5.739 15 C -0.233 4.233 16 H 0.079 0.921 17 C -0.079 4.079 18 N -0.971 5.971 19 Si 0.969 3.031 20 H -0.277 1.277 21 H -0.301 1.301 22 H -0.279 1.279 23 C -0.142 4.142 24 C 0.110 3.890 25 C -0.139 4.139 26 C 0.513 3.487 27 O -0.574 6.574 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.042 0.958 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.051 0.949 41 H 0.049 0.951 42 H 0.370 0.630 43 H 0.249 0.751 44 H 0.049 0.951 45 H 0.065 0.935 46 H 0.089 0.911 47 H 0.110 0.890 48 H 0.132 0.868 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.306 -9.484 -4.589 25.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.177 4.177 3 C 0.000 4.000 4 N -0.347 5.347 5 C -0.003 4.003 6 C -0.137 4.137 7 H 0.159 0.841 8 C 0.317 3.683 9 O -0.453 6.453 10 N -0.332 5.332 11 C 0.000 4.000 12 C -0.167 4.167 13 C 0.063 3.937 14 N -0.378 5.378 15 C -0.365 4.365 16 H 0.097 0.903 17 C -0.271 4.271 18 N -0.622 5.622 19 Si 0.799 3.201 20 H -0.203 1.203 21 H -0.227 1.227 22 H -0.205 1.205 23 C -0.183 4.183 24 C -0.012 4.012 25 C -0.179 4.179 26 C 0.302 3.698 27 O -0.454 6.454 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.124 0.876 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.124 0.876 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.201 0.799 43 H 0.057 0.943 44 H 0.068 0.932 45 H 0.084 0.916 46 H 0.107 0.893 47 H 0.128 0.872 48 H 0.150 0.850 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -23.653 -9.862 -4.859 26.083 hybrid contribution 1.205 0.735 0.111 1.416 sum -22.448 -9.127 -4.748 24.693 Atomic orbital electron populations 1.21671 0.93559 1.02512 1.02609 1.21866 0.97497 0.96662 1.01680 1.21632 0.76830 0.97519 1.04061 1.48494 1.07046 1.72121 1.07088 1.22039 0.87664 1.03884 0.86671 1.22209 0.93453 1.03350 0.94666 0.84094 1.20389 0.83338 0.81593 0.82951 1.90688 1.82115 1.39037 1.33510 1.48160 1.05278 1.43639 1.36155 1.21530 0.87582 0.93781 0.97067 1.22057 0.98562 0.97869 0.98196 1.20456 0.88800 0.89933 0.94560 1.42666 1.33918 1.51017 1.10174 1.19588 1.05911 1.17801 0.93220 0.90290 1.25532 1.02358 1.01612 0.97594 1.69812 1.39529 1.37906 1.14993 0.85270 0.79084 0.77831 0.77943 1.20302 1.22739 1.20530 1.22468 0.96767 0.98385 1.00673 1.22061 0.99529 0.90725 0.88882 1.22477 0.94069 1.06321 0.95043 1.21165 0.90065 0.74459 0.84105 1.90712 1.79411 1.52600 1.22689 0.91115 0.92569 0.92112 0.93878 0.91441 0.87630 0.90847 0.90119 0.87553 0.89782 0.89519 0.91229 0.92994 0.93345 0.79869 0.94259 0.93244 0.91631 0.89329 0.87186 0.85020 0.86980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 71.98 0.71 -0.75 16 2 C -0.14 -1.90 6.26 30.59 0.19 -1.71 16 3 C 0.12 1.65 5.93 86.38 0.51 2.16 16 4 N -0.62 -10.14 2.93 -817.85 -2.40 -12.54 16 5 C 0.12 1.71 6.69 86.82 0.58 2.29 16 6 C -0.12 -1.66 2.53 -10.48 -0.03 -1.69 16 7 H 0.14 1.52 7.69 -2.38 -0.02 1.50 16 8 C 0.53 11.10 7.00 87.66 0.61 11.72 16 9 O -0.57 -15.81 14.94 -3.05 -0.05 -15.85 16 10 N -0.60 -12.69 2.97 -818.83 -2.43 -15.13 16 11 C 0.12 2.92 6.43 86.36 0.56 3.47 16 12 C -0.13 -3.80 5.55 30.67 0.17 -3.63 16 13 C 0.17 5.91 2.73 45.02 0.12 6.03 16 14 N -0.74 -34.92 5.12 -322.81 -1.65 -36.57 16 15 C -0.23 -12.24 9.93 84.04 0.83 -11.41 16 16 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 17 C -0.08 -4.39 5.50 84.86 0.47 -3.93 16 18 N -0.97 -58.30 13.06 21.65 0.28 -58.02 16 19 Si 0.97 44.82 29.55 68.60 2.03 46.85 16 20 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 23 C -0.14 -4.04 5.66 30.69 0.17 -3.86 16 24 C 0.11 2.07 5.74 86.38 0.50 2.57 16 25 C -0.14 -2.04 5.32 30.58 0.16 -1.88 16 26 C 0.51 10.67 8.02 87.90 0.71 11.37 16 27 O -0.57 -16.72 17.60 -3.04 -0.05 -16.77 16 28 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.58 8.14 -2.38 -0.02 0.57 16 31 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.07 1.17 7.93 -2.39 -0.02 1.15 16 35 H 0.08 1.40 7.01 -2.39 -0.02 1.38 16 36 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.08 1.75 8.14 -2.38 -0.02 1.74 16 38 H 0.09 2.16 7.00 -2.39 -0.02 2.14 16 39 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 41 H 0.05 1.68 8.08 -2.39 -0.02 1.66 16 42 H 0.37 19.28 7.80 -92.71 -0.72 18.56 16 43 H 0.25 14.63 8.31 -92.70 -0.77 13.86 16 44 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 45 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.11 1.44 4.49 -2.39 -0.01 1.43 16 48 H 0.13 1.48 6.83 -2.39 -0.02 1.47 16 49 H 0.11 1.65 7.89 -2.39 -0.02 1.63 16 Total: -1.00 -71.92 387.41 2.21 -69.70 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: 0.22 Total: 27.57 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: 6.27 Total: 10.76 kcal Atomic # 7 Polarization: -116.05 SS G_CDS: -6.20 Total: -122.25 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -0.10 Total: -32.62 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -71.92 2.21 -69.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997044379.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.274 kcal (2) G-P(sol) polarization free energy of solvation -71.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds