Wall clock time and date at job start Fri Apr 10 2020 18:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.52750 * 2 1 4 4 C 1.53046 * 109.49664 * 120.07417 * 2 1 3 5 5 C 1.53038 * 109.53901 * 181.31520 * 4 2 1 6 6 C 1.53189 * 109.31658 * 298.63488 * 5 4 2 7 7 N 1.46924 * 108.77227 * 54.63556 * 6 5 4 8 8 C 1.34780 * 120.63047 * 126.37248 * 7 6 5 9 9 O 1.21346 * 119.99799 * 185.06077 * 8 7 6 10 10 C 1.49443 * 119.99875 * 5.05553 * 8 7 6 11 11 O 1.21359 * 119.99934 * 274.72307 * 10 8 7 12 12 N 1.34775 * 120.00100 * 94.73047 * 10 8 7 13 13 C 1.46931 * 120.63185 * 174.94022 * 12 10 8 14 14 C 1.53190 * 108.77573 * 126.41099 * 13 12 10 15 15 C 1.53042 * 109.31374 * 54.63360 * 14 13 12 16 16 N 1.46501 * 109.45859 * 178.62719 * 15 14 13 17 17 C 1.36936 * 120.00024 * 205.02809 * 16 15 14 18 18 H 1.07998 * 119.99483 * 359.97438 * 17 16 15 19 19 C 1.38812 * 120.00056 * 180.02562 * 17 16 15 20 20 N 1.31619 * 119.99958 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99956 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47030 * 89.99468 * 21 19 17 23 23 H 1.48495 * 109.47128 * 209.99545 * 21 19 17 24 24 H 1.48505 * 109.46755 * 329.99566 * 21 19 17 25 25 C 1.53037 * 109.52576 * 298.64057 * 15 14 13 26 26 C 1.46921 * 120.63044 * 354.95926 * 12 10 8 27 27 C 1.46929 * 118.73937 * 306.64167 * 7 6 5 28 28 H 1.08994 * 109.47182 * 299.92354 * 1 2 3 29 29 H 1.09002 * 109.46590 * 59.92666 * 1 2 3 30 30 H 1.08998 * 109.46875 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46017 * 61.29485 * 4 2 1 32 32 H 1.08998 * 109.45847 * 301.34095 * 4 2 1 33 33 H 1.09003 * 109.49937 * 178.68068 * 5 4 2 34 34 H 1.09000 * 109.52380 * 58.60812 * 5 4 2 35 35 H 1.08998 * 109.58513 * 294.84543 * 6 5 4 36 36 H 1.08999 * 109.58731 * 174.41990 * 6 5 4 37 37 H 1.09002 * 109.58243 * 6.62292 * 13 12 10 38 38 H 1.08994 * 109.70057 * 246.26993 * 13 12 10 39 39 H 1.09007 * 109.49516 * 294.68044 * 14 13 12 40 40 H 1.08999 * 109.52557 * 174.60547 * 14 13 12 41 41 H 1.09001 * 109.45843 * 58.65596 * 15 14 13 42 42 H 0.97004 * 120.00248 * 25.03377 * 16 15 14 43 43 H 0.97002 * 119.99969 * 180.02562 * 20 19 17 44 44 H 1.09004 * 109.49628 * 181.30704 * 25 15 14 45 45 H 1.09000 * 109.50380 * 301.40470 * 25 15 14 46 46 H 1.09008 * 109.58759 * 353.37370 * 26 12 10 47 47 H 1.09000 * 109.59169 * 113.66066 * 26 12 10 48 48 H 1.09004 * 109.58806 * 173.14463 * 27 7 6 49 49 H 1.09001 * 109.58475 * 293.57197 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7230 1.2485 5 6 3.5708 -0.6950 1.2662 6 6 4.1053 -1.4268 0.0311 7 7 3.5047 -0.8293 -1.1693 8 6 4.2813 -0.3859 -2.1777 9 8 3.7803 0.1882 -3.1221 10 6 5.7595 -0.6012 -2.1326 11 8 6.4699 0.1874 -1.5441 12 7 6.3037 -1.6710 -2.7457 13 6 7.7623 -1.8380 -2.8052 14 6 8.1231 -3.2206 -2.2530 15 6 7.3363 -4.2906 -3.0135 16 7 7.7035 -5.6165 -2.5102 17 6 7.5612 -6.7170 -3.3125 18 1 7.1779 -6.6075 -4.3162 19 6 7.9086 -7.9734 -2.8353 20 7 8.3753 -8.1068 -1.6119 21 14 7.7152 -9.4746 -3.9301 22 1 8.9680 -9.6927 -4.6970 23 1 7.4349 -10.6668 -3.0904 24 1 6.5889 -9.2575 -4.8733 25 6 5.8366 -4.0648 -2.8089 26 6 5.4497 -2.6921 -3.3675 27 6 2.0416 -0.7189 -1.2470 28 1 -0.3633 0.5126 0.8906 29 1 -0.3632 0.5150 -0.8894 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6967 -1.7571 1.2356 32 1 1.6581 -0.2243 2.1389 33 1 3.9334 -1.1895 2.1673 34 1 3.9164 0.3388 1.2545 35 1 3.8376 -2.4819 0.0872 36 1 5.1896 -1.3247 -0.0134 37 1 8.2432 -1.0671 -2.2031 38 1 8.0994 -1.7579 -3.8386 39 1 7.8698 -3.2668 -1.1938 40 1 9.1915 -3.3959 -2.3794 41 1 7.5715 -4.2276 -4.0760 42 1 8.0474 -5.7149 -1.6084 43 1 8.6184 -8.9847 -1.2786 44 1 5.2773 -4.8407 -3.3317 45 1 5.6047 -4.1031 -1.7445 46 1 4.4048 -2.4848 -3.1364 47 1 5.5942 -2.6809 -4.4478 48 1 1.7647 -0.1498 -2.1345 49 1 1.6022 -1.7151 -1.2973 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997077455.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:59 Heat of formation + Delta-G solvation = -85.362162 kcal Electronic energy + Delta-G solvation = -28852.938731 eV Core-core repulsion = 25006.842650 eV Total energy + Delta-G solvation = -3846.096080 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.26257 -40.47461 -38.97919 -38.62297 -36.24673 -34.98591 -33.87994 -32.92341 -32.25398 -31.11765 -28.48827 -27.32320 -26.54621 -24.99596 -24.45583 -23.40065 -23.23885 -21.61031 -20.92398 -19.90882 -19.17508 -18.82369 -18.22112 -17.66449 -16.73788 -16.37311 -16.12189 -16.06438 -15.67271 -15.49854 -15.39877 -15.31367 -15.04875 -14.86128 -14.58570 -14.47402 -14.15432 -13.87474 -13.58005 -13.38728 -13.26189 -13.02288 -12.84816 -12.81522 -12.69292 -12.58534 -12.23407 -12.16400 -12.08502 -12.01734 -11.85986 -11.70844 -11.67859 -11.35120 -11.33635 -10.91648 -10.74424 -9.96044 -9.91623 -8.99321 -7.91379 -5.19612 0.88214 0.90473 1.37947 1.50520 1.51127 1.59117 2.13972 2.58378 2.94739 3.41862 3.65295 3.74001 3.78934 3.80848 3.83644 3.95148 3.97194 4.07245 4.21382 4.30206 4.33192 4.33297 4.46474 4.55004 4.62630 4.67247 4.71172 4.74068 4.77021 4.79383 4.82011 4.89316 4.93095 5.03826 5.04442 5.12954 5.19229 5.21867 5.25321 5.35144 5.42250 5.48153 5.53673 5.56388 5.91013 5.97001 6.30506 6.55522 6.59214 7.37406 8.12496 8.35391 9.31936 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.015253 B = 0.003145 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.225044 B = 8900.719411 C = 9654.462270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 H 0.060 0.940 4 C -0.111 4.111 5 C -0.131 4.131 6 C 0.099 3.901 7 N -0.587 5.587 8 C 0.518 3.482 9 O -0.547 6.547 10 C 0.516 3.484 11 O -0.550 6.550 12 N -0.583 5.583 13 C 0.119 3.881 14 C -0.126 4.126 15 C 0.173 3.827 16 N -0.735 5.735 17 C -0.234 4.234 18 H 0.078 0.922 19 C -0.075 4.075 20 N -0.969 5.969 21 Si 0.967 3.033 22 H -0.291 1.291 23 H -0.299 1.299 24 H -0.268 1.268 25 C -0.134 4.134 26 C 0.116 3.884 27 C 0.108 3.892 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.056 0.944 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.058 0.942 40 H 0.080 0.920 41 H 0.050 0.950 42 H 0.372 0.628 43 H 0.249 0.751 44 H 0.069 0.931 45 H 0.055 0.945 46 H 0.081 0.919 47 H 0.089 0.911 48 H 0.082 0.918 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.332 15.669 4.225 21.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 H 0.078 0.922 4 C -0.149 4.149 5 C -0.169 4.169 6 C -0.023 4.023 7 N -0.320 5.320 8 C 0.301 3.699 9 O -0.425 6.425 10 C 0.299 3.701 11 O -0.428 6.428 12 N -0.316 5.316 13 C -0.003 4.003 14 C -0.164 4.164 15 C 0.064 3.936 16 N -0.374 5.374 17 C -0.366 4.366 18 H 0.096 0.904 19 C -0.267 4.267 20 N -0.620 5.620 21 Si 0.797 3.203 22 H -0.218 1.218 23 H -0.226 1.226 24 H -0.193 1.193 25 C -0.175 4.175 26 C -0.007 4.007 27 C -0.012 4.012 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.075 0.925 35 H 0.112 0.888 36 H 0.087 0.913 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.068 0.932 42 H 0.204 0.796 43 H 0.058 0.942 44 H 0.088 0.912 45 H 0.074 0.926 46 H 0.100 0.900 47 H 0.107 0.893 48 H 0.100 0.900 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.258 16.259 3.865 21.968 hybrid contribution 0.436 -1.021 -0.136 1.118 sum -13.822 15.238 3.729 20.908 Atomic orbital electron populations 1.21727 0.92508 1.02961 1.02579 1.21407 0.97360 0.99240 0.94283 0.92157 1.21611 0.93885 1.01746 0.97636 1.21895 0.97166 1.00731 0.97074 1.22028 0.97800 0.98576 0.83916 1.48256 1.07851 1.58215 1.17696 1.20215 0.87234 0.79196 0.83244 1.90764 1.73922 1.42641 1.35156 1.20310 0.88925 0.81913 0.78997 1.90768 1.62161 1.45775 1.44100 1.48251 1.08614 1.20992 1.53766 1.21766 0.77977 0.97461 1.03113 1.22053 1.01077 0.93311 0.99997 1.20404 0.92127 0.84232 0.96796 1.42608 1.77293 1.02176 1.15336 1.19602 1.34151 0.86656 0.96183 0.90419 1.25484 1.02941 1.00376 0.97882 1.69807 1.51852 1.22896 1.17465 0.85234 0.77808 0.79444 0.77855 1.21803 1.22605 1.19300 1.22424 0.99329 0.94724 1.01020 1.21890 0.93571 0.86653 0.98581 1.21935 0.76814 1.02550 0.99949 0.91295 0.92460 0.91368 0.90325 0.90021 0.88577 0.92493 0.88832 0.91327 0.88853 0.89000 0.92275 0.90153 0.93160 0.79592 0.94189 0.91218 0.92570 0.90030 0.89266 0.89987 0.88827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.20 71.98 0.66 -0.71 16 2 C -0.10 -1.41 2.86 -10.86 -0.03 -1.44 16 3 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 4 C -0.11 -1.29 5.17 30.62 0.16 -1.13 16 5 C -0.13 -1.94 6.08 30.67 0.19 -1.75 16 6 C 0.10 1.88 6.33 86.36 0.55 2.42 16 7 N -0.59 -12.94 2.98 -821.32 -2.45 -15.38 16 8 C 0.52 14.87 5.49 87.27 0.48 15.35 16 9 O -0.55 -18.38 16.51 -3.23 -0.05 -18.44 16 10 C 0.52 15.58 5.61 87.27 0.49 16.07 16 11 O -0.55 -19.26 16.31 -3.28 -0.05 -19.31 16 12 N -0.58 -15.82 2.97 -820.52 -2.44 -18.26 16 13 C 0.12 3.07 6.44 86.36 0.56 3.62 16 14 C -0.13 -3.72 5.55 30.67 0.17 -3.55 16 15 C 0.17 6.04 2.73 45.02 0.12 6.16 16 16 N -0.74 -34.23 5.12 -322.81 -1.65 -35.88 16 17 C -0.23 -12.17 9.93 84.03 0.83 -11.33 16 18 H 0.08 3.86 7.83 -2.91 -0.02 3.83 16 19 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 20 N -0.97 -57.30 13.06 21.65 0.28 -57.02 16 21 Si 0.97 44.45 29.55 68.60 2.03 46.47 16 22 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 23 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 25 C -0.13 -4.07 5.66 30.66 0.17 -3.89 16 26 C 0.12 2.91 6.32 86.36 0.55 3.46 16 27 C 0.11 1.88 5.70 86.22 0.49 2.37 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.07 1.58 6.23 -2.39 -0.01 1.56 16 37 H 0.09 2.46 7.00 -2.39 -0.02 2.45 16 38 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 40 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 42 H 0.37 18.94 7.80 -92.70 -0.72 18.22 16 43 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 44 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 45 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.08 1.94 6.37 -2.38 -0.02 1.93 16 47 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 48 H 0.08 1.67 7.00 -2.39 -0.02 1.65 16 49 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -67.83 385.26 1.73 -66.10 By element: Atomic # 1 Polarization: 29.50 SS G_CDS: 0.21 Total: 29.71 kcal Atomic # 6 Polarization: 16.16 SS G_CDS: 5.85 Total: 22.01 kcal Atomic # 7 Polarization: -120.29 SS G_CDS: -6.25 Total: -126.54 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -0.11 Total: -37.75 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -67.83 1.73 -66.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997077455.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.259 kcal (2) G-P(sol) polarization free energy of solvation -67.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds