Wall clock time and date at job start Fri Apr 10 2020 18:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47537 * 2 1 4 4 H 1.08996 * 109.47155 * 304.97893 * 3 2 1 5 5 C 1.50694 * 109.47079 * 184.97767 * 3 2 1 6 6 O 1.21287 * 119.99997 * 262.72207 * 5 3 2 7 7 N 1.34776 * 120.00381 * 82.72305 * 5 3 2 8 8 C 1.46932 * 120.62683 * 4.85357 * 7 5 3 9 9 C 1.52757 * 109.01004 * 233.58498 * 8 7 5 10 10 C 1.53044 * 109.38458 * 305.59204 * 9 8 7 11 11 N 1.46492 * 109.44969 * 181.25214 * 10 9 8 12 12 C 1.36938 * 119.99938 * 84.93389 * 11 10 9 13 13 H 1.07994 * 120.00282 * 0.02562 * 12 11 10 14 14 C 1.38814 * 119.99866 * 179.97438 * 12 11 10 15 15 N 1.31614 * 120.00149 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99849 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47492 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47177 * 120.00580 * 16 14 12 19 19 H 1.48502 * 109.47414 * 240.00121 * 16 14 12 20 20 C 1.53040 * 109.53628 * 61.23759 * 10 9 8 21 21 C 1.46919 * 120.63412 * 185.13820 * 7 5 3 22 22 N 1.46499 * 109.46629 * 64.97822 * 3 2 1 23 23 C 1.46765 * 124.34782 * 240.00112 * 22 3 2 24 24 C 1.54484 * 105.47317 * 197.01936 * 23 22 3 25 25 C 1.54626 * 101.76597 * 334.58259 * 24 23 22 26 26 C 1.34419 * 124.35196 * 59.70518 * 22 3 2 27 27 O 1.21286 * 124.94283 * 359.56241 * 26 22 3 28 28 H 1.08993 * 109.47330 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46923 * 300.00434 * 1 2 3 30 30 H 1.08997 * 109.46646 * 59.99836 * 1 2 3 31 31 H 1.09000 * 109.47150 * 239.99976 * 2 1 3 32 32 H 1.09004 * 109.46996 * 120.00195 * 2 1 3 33 33 H 1.08999 * 109.58379 * 353.42142 * 8 7 5 34 34 H 1.08998 * 109.58519 * 113.84067 * 8 7 5 35 35 H 1.08994 * 109.56933 * 185.55242 * 9 8 7 36 36 H 1.09003 * 109.35789 * 65.50035 * 9 8 7 37 37 H 1.08997 * 109.45593 * 301.22007 * 10 9 8 38 38 H 0.96998 * 120.00120 * 264.93715 * 11 10 9 39 39 H 0.97007 * 120.00329 * 179.97438 * 15 14 12 40 40 H 1.09003 * 109.49430 * 178.68796 * 20 10 9 41 41 H 1.08995 * 109.49793 * 58.59024 * 20 10 9 42 42 H 1.09005 * 109.58350 * 246.15234 * 21 7 5 43 43 H 1.08999 * 109.58700 * 6.43282 * 21 7 5 44 44 H 1.08997 * 110.24460 * 316.01582 * 23 22 3 45 45 H 1.08996 * 110.24860 * 78.01773 * 23 22 3 46 46 H 1.09007 * 110.97089 * 92.70185 * 24 23 22 47 47 H 1.08997 * 110.97202 * 216.46323 * 24 23 22 48 48 H 1.08999 * 110.48461 * 143.47605 * 25 24 23 49 49 H 1.09000 * 110.48866 * 265.98960 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6059 1.9815 -0.8420 5 6 3.5420 1.4442 -0.1233 6 8 4.2318 1.5477 0.8689 7 7 4.1188 1.3306 -1.3361 8 6 3.2997 1.3111 -2.5557 9 6 3.6533 0.0699 -3.3728 10 6 5.1621 0.0427 -3.6281 11 7 5.4988 -1.1313 -4.4370 12 6 5.4001 -1.0736 -5.8016 13 1 5.0744 -0.1626 -6.2815 14 6 5.7197 -2.1859 -6.5682 15 7 6.1172 -3.2960 -5.9835 16 14 5.5858 -2.1070 -8.4297 17 1 5.1207 -0.7565 -8.8358 18 1 6.9159 -2.3743 -9.0335 19 1 4.6148 -3.1275 -8.8999 20 6 5.9059 -0.0281 -2.2925 21 6 5.5781 1.2177 -1.4634 22 7 1.6521 2.0976 1.2516 23 6 0.8072 3.2949 1.3323 24 6 1.0283 3.8604 2.7528 25 6 1.4520 2.5947 3.5336 26 6 2.0194 1.6759 2.4740 27 8 2.7077 0.7021 2.6951 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.2439 1.2810 -2.2863 34 1 3.5027 2.2043 -3.1465 35 1 3.1237 0.0966 -4.3251 36 1 3.3619 -0.8225 -2.8189 37 1 5.4566 0.9471 -4.1603 38 1 5.7917 -1.9494 -4.0061 39 1 6.3402 -4.0734 -6.5191 40 1 6.9795 -0.0709 -2.4758 41 1 5.5933 -0.9195 -1.7487 42 1 5.9708 2.1032 -1.9634 43 1 6.0255 1.1286 -0.4735 44 1 1.1151 4.0249 0.5837 45 1 -0.2400 3.0278 1.1913 46 1 1.8237 4.6057 2.7566 47 1 0.1045 4.2760 3.1553 48 1 2.2115 2.8408 4.2756 49 1 0.5876 2.1343 4.0120 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997329450.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:14 Heat of formation + Delta-G solvation = -54.082330 kcal Electronic energy + Delta-G solvation = -28997.866202 eV Core-core repulsion = 25153.126517 eV Total energy + Delta-G solvation = -3844.739685 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.03709 -39.55898 -37.28947 -36.40504 -35.09111 -34.41901 -32.02715 -31.20937 -30.88626 -29.32857 -27.78570 -27.32757 -24.77991 -23.04956 -22.76135 -22.26936 -22.14161 -20.71670 -19.52864 -18.41721 -17.40316 -17.09069 -17.01695 -16.60800 -15.63070 -15.11624 -14.83168 -14.71736 -14.62913 -14.07701 -13.85540 -13.74580 -13.57569 -13.56565 -13.37995 -13.30879 -13.15615 -12.77351 -12.52194 -12.38249 -12.05521 -11.85514 -11.82005 -11.59444 -11.36934 -11.28636 -11.13238 -10.98128 -10.89320 -10.83263 -10.48286 -10.21849 -9.88861 -9.81742 -9.69211 -9.55576 -8.93943 -8.72054 -8.45744 -6.99899 -5.79572 -3.08953 2.46194 2.70110 2.79201 3.27213 3.40413 3.45723 3.48400 4.12757 4.18710 4.44909 4.50189 4.55416 4.65425 4.72552 4.82693 5.04244 5.09859 5.13498 5.20141 5.23148 5.33504 5.35942 5.38751 5.40585 5.51411 5.52114 5.54839 5.60892 5.66267 5.72350 5.79295 5.90386 5.94102 5.99941 6.10474 6.22420 6.31499 6.36860 6.42791 6.50295 6.63654 6.88320 7.02507 7.05382 7.52836 7.66480 8.17964 8.34131 8.38496 9.49785 10.07583 10.42170 11.42989 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.025378 B = 0.002800 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.067146 B = 9997.026698 C =10286.466819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.137 4.137 3 C 0.146 3.854 4 H 0.108 0.892 5 C 0.501 3.499 6 O -0.519 6.519 7 N -0.606 5.606 8 C 0.105 3.895 9 C -0.151 4.151 10 C 0.180 3.820 11 N -0.724 5.724 12 C -0.239 4.239 13 H 0.071 0.929 14 C -0.014 4.014 15 N -0.931 5.931 16 Si 0.906 3.094 17 H -0.280 1.280 18 H -0.292 1.292 19 H -0.292 1.292 20 C -0.139 4.139 21 C 0.119 3.881 22 N -0.612 5.612 23 C 0.104 3.896 24 C -0.130 4.130 25 C -0.155 4.155 26 C 0.522 3.478 27 O -0.502 6.502 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.060 0.940 37 H 0.048 0.952 38 H 0.384 0.616 39 H 0.255 0.745 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.086 0.914 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.089 0.911 48 H 0.099 0.901 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.562 15.960 15.383 26.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.175 4.175 3 C 0.039 3.961 4 H 0.125 0.875 5 C 0.286 3.714 6 O -0.394 6.394 7 N -0.341 5.341 8 C -0.018 4.018 9 C -0.193 4.193 10 C 0.070 3.930 11 N -0.364 5.364 12 C -0.371 4.371 13 H 0.089 0.911 14 C -0.210 4.210 15 N -0.580 5.580 16 Si 0.737 3.263 17 H -0.206 1.206 18 H -0.219 1.219 19 H -0.219 1.219 20 C -0.178 4.178 21 C -0.004 4.004 22 N -0.348 5.348 23 C -0.019 4.019 24 C -0.168 4.168 25 C -0.195 4.195 26 C 0.309 3.691 27 O -0.375 6.375 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.218 0.782 39 H 0.065 0.935 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.105 0.895 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.100 0.900 47 H 0.108 0.892 48 H 0.118 0.882 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.786 15.493 15.794 26.068 hybrid contribution -0.040 -0.301 -1.199 1.236 sum -13.826 15.192 14.595 25.199 Atomic orbital electron populations 1.21693 0.94614 1.02169 1.01575 1.21869 0.96869 0.93962 1.04808 1.20914 0.92323 0.95980 0.86862 0.87464 1.20789 0.90447 0.76986 0.83131 1.90736 1.64287 1.48259 1.36137 1.48159 1.07764 1.72469 1.05712 1.21831 0.94278 1.00080 0.85639 1.22609 1.01361 0.95844 0.99454 1.20145 0.90827 0.92064 0.89992 1.42447 1.79881 1.10938 1.03173 1.19266 1.37775 0.97340 0.82670 0.91127 1.24757 1.02205 0.96071 0.97929 1.69673 1.51647 1.02471 1.34164 0.86141 0.77231 0.77172 0.85769 1.20562 1.21887 1.21895 1.22208 1.01414 0.97267 0.96915 1.21582 0.79305 0.98191 1.01327 1.48004 1.51789 1.29599 1.05405 1.22086 0.94746 0.86681 0.98368 1.22571 1.02986 0.97206 0.94067 1.22318 1.03031 0.96017 0.98159 1.20708 0.79248 0.85270 0.83876 1.90740 1.35954 1.27606 1.83224 0.92115 0.92832 0.92580 0.89865 0.89618 0.90714 0.91395 0.90558 0.92137 0.93438 0.78244 0.93525 0.90570 0.91835 0.91708 0.89530 0.90571 0.90973 0.90021 0.89248 0.88214 0.88149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.80 37.16 0.36 -0.92 16 2 C -0.14 -1.61 5.15 -26.73 -0.14 -1.75 16 3 C 0.15 1.69 1.82 -69.08 -0.13 1.56 16 4 H 0.11 0.95 6.32 -51.93 -0.33 0.62 16 5 C 0.50 7.64 6.85 -10.99 -0.08 7.56 16 6 O -0.52 -9.97 13.52 -16.00 -0.22 -10.18 16 7 N -0.61 -8.64 2.98 -173.03 -0.52 -9.16 16 8 C 0.11 1.30 6.02 -3.93 -0.02 1.28 16 9 C -0.15 -2.44 5.64 -26.83 -0.15 -2.59 16 10 C 0.18 3.40 2.73 -67.89 -0.19 3.21 16 11 N -0.72 -17.65 5.12 -53.39 -0.27 -17.93 16 12 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 13 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 14 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 15 N -0.93 -27.92 13.06 55.49 0.72 -27.19 16 16 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 C -0.14 -2.35 5.55 -26.61 -0.15 -2.50 16 21 C 0.12 1.78 6.42 -3.71 -0.02 1.76 16 22 N -0.61 -6.61 2.22 -166.16 -0.37 -6.98 16 23 C 0.10 0.67 7.30 -3.12 -0.02 0.64 16 24 C -0.13 -0.70 7.18 -25.10 -0.18 -0.88 16 25 C -0.15 -1.26 6.86 -26.74 -0.18 -1.44 16 26 C 0.52 6.87 6.76 -10.85 -0.07 6.79 16 27 O -0.50 -9.12 14.63 -16.00 -0.23 -9.35 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.46 7.75 -51.93 -0.40 0.06 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 1.01 7.70 -51.93 -0.40 0.61 16 32 H 0.09 1.28 6.60 -51.93 -0.34 0.94 16 33 H 0.07 0.74 5.16 -51.93 -0.27 0.47 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 38 H 0.38 10.15 7.80 -40.82 -0.32 9.83 16 39 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.09 1.40 7.04 -51.93 -0.37 1.03 16 44 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 47 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 48 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 382.48 15.07 5.76 5.76 Total: -1.00 -35.47 382.48 -9.66 -45.14 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -8.31 Total: 7.27 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -1.21 Total: 5.66 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: -0.43 Total: -61.26 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.45 Total: -19.53 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.47 -9.66 -45.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997329450.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.947 kcal (2) G-P(sol) polarization free energy of solvation -35.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds