Wall clock time and date at job start Fri Apr 10 2020 18:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47537 * 2 1 4 4 H 1.08996 * 109.47155 * 304.97893 * 3 2 1 5 5 C 1.50694 * 109.47079 * 184.97767 * 3 2 1 6 6 O 1.21287 * 119.99997 * 262.72207 * 5 3 2 7 7 N 1.34776 * 120.00381 * 82.72305 * 5 3 2 8 8 C 1.46932 * 120.62683 * 4.85357 * 7 5 3 9 9 C 1.52757 * 109.01004 * 233.58498 * 8 7 5 10 10 C 1.53044 * 109.38458 * 305.59204 * 9 8 7 11 11 N 1.46492 * 109.44969 * 181.25214 * 10 9 8 12 12 C 1.36938 * 119.99938 * 84.93389 * 11 10 9 13 13 H 1.07994 * 120.00282 * 0.02562 * 12 11 10 14 14 C 1.38814 * 119.99866 * 179.97438 * 12 11 10 15 15 N 1.31614 * 120.00149 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99849 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47492 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47177 * 120.00580 * 16 14 12 19 19 H 1.48502 * 109.47414 * 240.00121 * 16 14 12 20 20 C 1.53040 * 109.53628 * 61.23759 * 10 9 8 21 21 C 1.46919 * 120.63412 * 185.13820 * 7 5 3 22 22 N 1.46499 * 109.46629 * 64.97822 * 3 2 1 23 23 C 1.46765 * 124.34782 * 240.00112 * 22 3 2 24 24 C 1.54484 * 105.47317 * 197.01936 * 23 22 3 25 25 C 1.54626 * 101.76597 * 334.58259 * 24 23 22 26 26 C 1.34419 * 124.35196 * 59.70518 * 22 3 2 27 27 O 1.21286 * 124.94283 * 359.56241 * 26 22 3 28 28 H 1.08993 * 109.47330 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46923 * 300.00434 * 1 2 3 30 30 H 1.08997 * 109.46646 * 59.99836 * 1 2 3 31 31 H 1.09000 * 109.47150 * 239.99976 * 2 1 3 32 32 H 1.09004 * 109.46996 * 120.00195 * 2 1 3 33 33 H 1.08999 * 109.58379 * 353.42142 * 8 7 5 34 34 H 1.08998 * 109.58519 * 113.84067 * 8 7 5 35 35 H 1.08994 * 109.56933 * 185.55242 * 9 8 7 36 36 H 1.09003 * 109.35789 * 65.50035 * 9 8 7 37 37 H 1.08997 * 109.45593 * 301.22007 * 10 9 8 38 38 H 0.96998 * 120.00120 * 264.93715 * 11 10 9 39 39 H 0.97007 * 120.00329 * 179.97438 * 15 14 12 40 40 H 1.09003 * 109.49430 * 178.68796 * 20 10 9 41 41 H 1.08995 * 109.49793 * 58.59024 * 20 10 9 42 42 H 1.09005 * 109.58350 * 246.15234 * 21 7 5 43 43 H 1.08999 * 109.58700 * 6.43282 * 21 7 5 44 44 H 1.08997 * 110.24460 * 316.01582 * 23 22 3 45 45 H 1.08996 * 110.24860 * 78.01773 * 23 22 3 46 46 H 1.09007 * 110.97089 * 92.70185 * 24 23 22 47 47 H 1.08997 * 110.97202 * 216.46323 * 24 23 22 48 48 H 1.08999 * 110.48461 * 143.47605 * 25 24 23 49 49 H 1.09000 * 110.48866 * 265.98960 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6059 1.9815 -0.8420 5 6 3.5420 1.4442 -0.1233 6 8 4.2318 1.5477 0.8689 7 7 4.1188 1.3306 -1.3361 8 6 3.2997 1.3111 -2.5557 9 6 3.6533 0.0699 -3.3728 10 6 5.1621 0.0427 -3.6281 11 7 5.4988 -1.1313 -4.4370 12 6 5.4001 -1.0736 -5.8016 13 1 5.0744 -0.1626 -6.2815 14 6 5.7197 -2.1859 -6.5682 15 7 6.1172 -3.2960 -5.9835 16 14 5.5858 -2.1070 -8.4297 17 1 5.1207 -0.7565 -8.8358 18 1 6.9159 -2.3743 -9.0335 19 1 4.6148 -3.1275 -8.8999 20 6 5.9059 -0.0281 -2.2925 21 6 5.5781 1.2177 -1.4634 22 7 1.6521 2.0976 1.2516 23 6 0.8072 3.2949 1.3323 24 6 1.0283 3.8604 2.7528 25 6 1.4520 2.5947 3.5336 26 6 2.0194 1.6759 2.4740 27 8 2.7077 0.7021 2.6951 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.2439 1.2810 -2.2863 34 1 3.5027 2.2043 -3.1465 35 1 3.1237 0.0966 -4.3251 36 1 3.3619 -0.8225 -2.8189 37 1 5.4566 0.9471 -4.1603 38 1 5.7917 -1.9494 -4.0061 39 1 6.3402 -4.0734 -6.5191 40 1 6.9795 -0.0709 -2.4758 41 1 5.5933 -0.9195 -1.7487 42 1 5.9708 2.1032 -1.9634 43 1 6.0255 1.1286 -0.4735 44 1 1.1151 4.0249 0.5837 45 1 -0.2400 3.0278 1.1913 46 1 1.8237 4.6057 2.7566 47 1 0.1045 4.2760 3.1553 48 1 2.2115 2.8408 4.2756 49 1 0.5876 2.1343 4.0120 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997329450.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:13 Heat of formation + Delta-G solvation = -76.949930 kcal Electronic energy + Delta-G solvation = -28998.857816 eV Core-core repulsion = 25153.126517 eV Total energy + Delta-G solvation = -3845.731298 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.00546 -40.63979 -38.67269 -37.36943 -36.21419 -35.84035 -33.78761 -32.17054 -31.92705 -31.04234 -28.46738 -28.26743 -26.42652 -24.43878 -24.19484 -23.20154 -22.68861 -22.01770 -20.74352 -19.53708 -19.02344 -18.45622 -17.89869 -17.40448 -16.81960 -16.61756 -16.18652 -15.74633 -15.55476 -15.44093 -15.32260 -15.11859 -14.79886 -14.62559 -14.48063 -14.33175 -13.87451 -13.77863 -13.55776 -13.41470 -13.24620 -13.12936 -12.90234 -12.85993 -12.64616 -12.40103 -12.20501 -12.14940 -12.09900 -12.01650 -12.00234 -11.80579 -11.69239 -11.32681 -11.01744 -10.85758 -10.53826 -9.69112 -9.61617 -9.00932 -7.92543 -5.21709 1.46854 1.48883 1.49598 1.59404 1.59685 1.92256 2.25902 2.57446 3.33130 3.41325 3.52911 3.67146 3.77506 3.82413 3.87562 3.91951 4.05315 4.11193 4.15658 4.19655 4.32789 4.34544 4.38583 4.44058 4.61759 4.67580 4.71507 4.74281 4.77373 4.79882 4.85228 4.90626 4.99256 5.03759 5.05107 5.11483 5.12301 5.25554 5.27710 5.31839 5.49034 5.54070 5.57639 5.65001 6.24123 6.28594 6.38108 7.10027 7.34494 7.35109 8.09944 8.33109 9.31539 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.025378 B = 0.002800 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.067146 B = 9997.026698 C =10286.466819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.132 4.132 3 C 0.148 3.852 4 H 0.148 0.852 5 C 0.493 3.507 6 O -0.565 6.565 7 N -0.606 5.606 8 C 0.112 3.888 9 C -0.141 4.141 10 C 0.175 3.825 11 N -0.740 5.740 12 C -0.231 4.231 13 H 0.083 0.917 14 C -0.081 4.081 15 N -0.974 5.974 16 Si 0.972 3.028 17 H -0.260 1.260 18 H -0.299 1.299 19 H -0.296 1.296 20 C -0.128 4.128 21 C 0.126 3.874 22 N -0.611 5.611 23 C 0.096 3.904 24 C -0.119 4.119 25 C -0.151 4.151 26 C 0.502 3.498 27 O -0.569 6.569 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.044 0.956 33 H 0.109 0.891 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.043 0.957 37 H 0.054 0.946 38 H 0.368 0.632 39 H 0.249 0.751 40 H 0.070 0.930 41 H 0.042 0.958 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.093 0.907 45 H 0.101 0.899 46 H 0.079 0.921 47 H 0.125 0.875 48 H 0.093 0.907 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.675 19.472 14.530 30.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.171 4.171 3 C 0.041 3.959 4 H 0.165 0.835 5 C 0.281 3.719 6 O -0.443 6.443 7 N -0.340 5.340 8 C -0.010 4.010 9 C -0.182 4.182 10 C 0.067 3.933 11 N -0.378 5.378 12 C -0.363 4.363 13 H 0.101 0.899 14 C -0.273 4.273 15 N -0.626 5.626 16 Si 0.801 3.199 17 H -0.184 1.184 18 H -0.226 1.226 19 H -0.224 1.224 20 C -0.167 4.167 21 C 0.002 3.998 22 N -0.345 5.345 23 C -0.025 4.025 24 C -0.156 4.156 25 C -0.191 4.191 26 C 0.292 3.708 27 O -0.447 6.447 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.127 0.873 34 H 0.112 0.888 35 H 0.092 0.908 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.199 0.801 39 H 0.057 0.943 40 H 0.088 0.912 41 H 0.061 0.939 42 H 0.105 0.895 43 H 0.089 0.911 44 H 0.111 0.889 45 H 0.119 0.881 46 H 0.097 0.903 47 H 0.143 0.857 48 H 0.112 0.888 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -16.965 19.109 14.925 29.592 hybrid contribution 0.959 -1.364 -0.864 1.878 sum -16.005 17.745 14.061 27.727 Atomic orbital electron populations 1.21652 0.91884 1.02584 1.03097 1.21794 0.99103 0.93798 1.02425 1.20983 0.89611 0.96459 0.88827 0.83501 1.21569 0.92100 0.75778 0.82467 1.90722 1.65682 1.50289 1.37639 1.48260 1.07466 1.71876 1.06368 1.21934 0.95793 0.98853 0.84429 1.22381 0.98631 0.97322 0.99846 1.20401 0.92919 0.90123 0.89902 1.42698 1.80180 1.11899 1.03059 1.19687 1.35430 0.97301 0.83845 0.89922 1.25584 1.03289 0.96054 1.02360 1.69845 1.53994 1.03182 1.35536 0.85088 0.76487 0.77781 0.80513 1.18412 1.22631 1.22381 1.22059 1.00836 0.97606 0.96193 1.21434 0.80401 0.97773 1.00157 1.48217 1.51459 1.30487 1.04381 1.22492 0.95414 0.85206 0.99387 1.22627 1.04508 0.95521 0.92982 1.22361 1.03301 0.96488 0.96987 1.21676 0.78433 0.84964 0.85763 1.90698 1.39013 1.30572 1.84449 0.92403 0.92285 0.89889 0.90657 0.93729 0.87307 0.88814 0.90802 0.93851 0.92845 0.80060 0.94264 0.91172 0.93890 0.89491 0.91103 0.88903 0.88094 0.90268 0.85719 0.88808 0.86175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 9.80 71.98 0.71 -1.36 16 2 C -0.13 -3.04 5.15 30.60 0.16 -2.88 16 3 C 0.15 3.12 1.82 44.25 0.08 3.20 16 4 H 0.15 1.87 6.32 -2.39 -0.02 1.85 16 5 C 0.49 14.76 6.85 87.66 0.60 15.36 16 6 O -0.57 -22.38 13.52 17.55 0.24 -22.14 16 7 N -0.61 -16.45 2.98 -819.74 -2.44 -18.89 16 8 C 0.11 2.41 6.02 86.22 0.52 2.93 16 9 C -0.14 -4.34 5.64 30.53 0.17 -4.17 16 10 C 0.17 6.51 2.73 45.02 0.12 6.63 16 11 N -0.74 -36.51 5.12 -322.83 -1.65 -38.16 16 12 C -0.23 -12.35 9.93 84.03 0.83 -11.51 16 13 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16 14 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 15 N -0.97 -59.96 13.06 21.65 0.28 -59.68 16 16 Si 0.97 45.33 29.55 68.60 2.03 47.35 16 17 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 18 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 19 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 20 C -0.13 -4.42 5.55 30.67 0.17 -4.25 16 21 C 0.13 3.73 6.42 86.36 0.55 4.28 16 22 N -0.61 -11.94 2.22 -798.19 -1.77 -13.71 16 23 C 0.10 0.81 7.30 86.83 0.63 1.44 16 24 C -0.12 -0.83 7.18 31.65 0.23 -0.60 16 25 C -0.15 -2.22 6.86 30.59 0.21 -2.01 16 26 C 0.50 13.19 6.76 87.90 0.59 13.79 16 27 O -0.57 -21.98 14.63 17.55 0.26 -21.73 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.06 0.85 7.75 -2.38 -0.02 0.83 16 30 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 1.80 7.70 -2.39 -0.02 1.78 16 32 H 0.04 1.40 6.60 -2.38 -0.02 1.39 16 33 H 0.11 1.65 5.16 -2.39 -0.01 1.64 16 34 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.05 1.95 8.08 -2.39 -0.02 1.93 16 38 H 0.37 20.22 7.80 -92.71 -0.72 19.50 16 39 H 0.25 14.89 8.31 -92.70 -0.77 14.12 16 40 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 43 H 0.07 2.36 7.04 -2.39 -0.02 2.35 16 44 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 46 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 47 H 0.12 0.06 8.14 -2.39 -0.02 0.04 16 48 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 49 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -83.38 382.48 3.20 -80.18 By element: Atomic # 1 Polarization: 29.84 SS G_CDS: 0.22 Total: 30.05 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: 6.05 Total: 16.72 kcal Atomic # 7 Polarization: -124.86 SS G_CDS: -5.58 Total: -130.44 kcal Atomic # 8 Polarization: -44.36 SS G_CDS: 0.49 Total: -43.87 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -83.38 3.20 -80.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997329450.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.228 kcal (2) G-P(sol) polarization free energy of solvation -83.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds