Wall clock time and date at job start Fri Apr 10 2020 18:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47051 * 2 1 4 4 H 1.09001 * 109.99822 * 53.81760 * 3 2 1 5 5 C 1.54337 * 109.98823 * 292.78503 * 3 2 1 6 6 C 1.55155 * 103.01929 * 218.66538 * 5 3 2 7 7 C 1.54915 * 101.58142 * 35.30553 * 6 5 3 8 8 N 1.47016 * 109.88049 * 174.91830 * 3 2 1 9 9 C 1.34778 * 125.64671 * 298.38653 * 8 3 2 10 10 O 1.21345 * 120.00232 * 5.12628 * 9 8 3 11 11 C 1.49452 * 119.99634 * 185.12129 * 9 8 3 12 12 O 1.21353 * 120.00339 * 0.02562 * 11 9 8 13 13 N 1.34778 * 119.99634 * 180.02562 * 11 9 8 14 14 C 1.46503 * 119.99823 * 180.02562 * 13 11 9 15 15 C 1.53040 * 109.45862 * 155.00358 * 14 13 11 16 16 C 1.53198 * 109.31166 * 181.38553 * 15 14 13 17 17 N 1.46928 * 108.77350 * 305.36621 * 16 15 14 18 18 C 1.36943 * 120.62933 * 233.58324 * 17 16 15 19 19 H 1.07992 * 119.99781 * 143.77016 * 18 17 16 20 20 C 1.38812 * 119.99712 * 323.77721 * 18 17 16 21 21 N 1.31616 * 120.00498 * 1.61293 * 20 18 17 22 22 Si 1.86804 * 119.99554 * 181.61524 * 20 18 17 23 23 H 1.48496 * 109.47258 * 89.99811 * 22 20 18 24 24 H 1.48501 * 109.46967 * 209.99628 * 22 20 18 25 25 H 1.48494 * 109.47208 * 329.99565 * 22 20 18 26 26 C 1.46920 * 118.74220 * 53.86027 * 17 16 15 27 27 C 1.53040 * 109.45933 * 275.07067 * 14 13 11 28 28 H 1.09000 * 109.47678 * 305.06709 * 1 2 3 29 29 H 1.09000 * 109.47432 * 65.06865 * 1 2 3 30 30 H 1.09001 * 109.47239 * 185.06712 * 1 2 3 31 31 H 1.08997 * 109.47590 * 239.99861 * 2 1 3 32 32 H 1.09005 * 109.47116 * 119.99377 * 2 1 3 33 33 H 1.08994 * 110.85175 * 100.19723 * 5 3 2 34 34 H 1.09009 * 110.66591 * 337.04467 * 5 3 2 35 35 H 1.08997 * 111.00790 * 277.23058 * 6 5 3 36 36 H 1.08997 * 111.03631 * 153.39430 * 6 5 3 37 37 H 1.08996 * 110.36527 * 204.15374 * 7 6 5 38 38 H 1.09003 * 110.36529 * 81.83013 * 7 6 5 39 39 H 0.97002 * 120.00344 * 0.02562 * 13 11 9 40 40 H 1.09006 * 109.44919 * 35.03227 * 14 13 11 41 41 H 1.08999 * 109.49900 * 61.43508 * 15 14 13 42 42 H 1.08994 * 109.49796 * 301.33440 * 15 14 13 43 43 H 1.08997 * 109.58933 * 185.57690 * 16 15 14 44 44 H 1.09001 * 109.70377 * 65.22045 * 16 15 14 45 45 H 0.96989 * 120.00402 * 180.02562 * 21 20 18 46 46 H 1.09003 * 109.59096 * 65.92319 * 26 17 16 47 47 H 1.08997 * 109.58775 * 186.35365 * 26 17 16 48 48 H 1.08994 * 109.49978 * 298.56807 * 27 14 13 49 49 H 1.08999 * 109.49961 * 58.63400 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5941 1.9956 0.8267 5 6 1.6862 2.1272 -1.3372 6 6 2.9441 2.9857 -1.6338 7 6 4.0750 2.0806 -1.0846 8 7 3.5050 1.4549 0.1225 9 6 4.2103 0.9695 1.1633 10 8 3.6414 0.3859 2.0624 11 6 5.6931 1.1499 1.2102 12 8 6.2621 1.7338 0.3113 13 7 6.3985 0.6640 2.2508 14 6 7.8520 0.8413 2.2970 15 6 8.3253 0.7950 3.7516 16 6 9.8406 1.0153 3.7987 17 7 10.4890 0.0309 2.9214 18 6 11.4881 -0.7760 3.3968 19 1 11.5677 -1.7965 3.0526 20 6 12.3985 -0.2821 4.3210 21 7 12.2826 0.9516 4.7645 22 14 13.7883 -1.3687 4.9353 23 1 14.9717 -1.2046 4.0535 24 1 14.1464 -0.9774 6.3223 25 1 13.3515 -2.7879 4.9185 26 6 10.0493 -0.0670 1.5230 27 6 8.5278 -0.2789 1.5030 28 1 -0.3634 0.5904 0.8411 29 1 -0.3634 0.4332 -0.9319 30 1 -0.3634 -1.0237 0.0908 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 0.8049 2.7592 -1.2283 34 1 1.5324 1.3849 -2.1206 35 1 2.9062 3.9332 -1.0963 36 1 3.0614 3.1510 -2.7048 37 1 4.9480 2.6795 -0.8252 38 1 4.3407 1.3186 -1.8174 39 1 5.9438 0.1969 2.9691 40 1 8.1142 1.8051 1.8602 41 1 8.0855 -0.1776 4.1814 42 1 7.8260 1.5783 4.3218 43 1 10.1973 0.8851 4.8204 44 1 10.0764 2.0224 3.4549 45 1 12.9189 1.2968 5.4099 46 1 10.2996 0.8537 0.9959 47 1 10.5436 -0.9114 1.0428 48 1 8.2861 -1.2413 1.9539 49 1 8.1722 -0.2603 0.4728 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001003931845.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:23 Heat of formation + Delta-G solvation = -72.021879 kcal Electronic energy + Delta-G solvation = -28183.595700 eV Core-core repulsion = 24338.078098 eV Total energy + Delta-G solvation = -3845.517602 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.01414 -40.43478 -38.94611 -38.68235 -36.15625 -34.46724 -33.95145 -32.59902 -31.83213 -31.23809 -28.85709 -27.51114 -26.22626 -24.43808 -23.91320 -23.42318 -22.76580 -21.71174 -21.22140 -20.44171 -19.01923 -18.39274 -18.23952 -17.37860 -17.01740 -16.66323 -16.43783 -15.84019 -15.59361 -15.34700 -15.21951 -15.15273 -14.82310 -14.69247 -14.38446 -14.19679 -14.13195 -14.01755 -13.43168 -13.26888 -13.00498 -12.88469 -12.80574 -12.72855 -12.62770 -12.52026 -12.19726 -12.13368 -12.03533 -11.97366 -11.89809 -11.64757 -11.59281 -11.42318 -11.38319 -10.56396 -10.53633 -10.23034 -9.82512 -8.57460 -7.88390 -5.45171 0.29996 1.19707 1.47987 1.49037 1.57837 2.08368 2.42158 2.49833 3.22385 3.30392 3.60320 3.66606 3.68462 3.83892 3.85494 3.99017 4.17614 4.21549 4.27119 4.33804 4.44224 4.47575 4.55650 4.62154 4.69196 4.76096 4.82889 4.91196 4.92752 4.95938 4.99274 5.02005 5.10021 5.12804 5.13963 5.15226 5.24824 5.28641 5.33367 5.36721 5.46374 5.50496 5.64590 5.75635 6.01885 6.21908 6.45217 6.63867 6.90776 7.17070 7.82373 8.38162 9.17037 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.032277 B = 0.002371 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.288293 B =11805.982128 C =12102.000020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 C 0.127 3.873 4 H 0.074 0.926 5 C -0.117 4.117 6 C -0.127 4.127 7 C 0.084 3.916 8 N -0.586 5.586 9 C 0.519 3.481 10 O -0.543 6.543 11 C 0.506 3.494 12 O -0.535 6.535 13 N -0.684 5.684 14 C 0.161 3.839 15 C -0.133 4.133 16 C 0.179 3.821 17 N -0.612 5.612 18 C -0.267 4.267 19 H 0.065 0.935 20 C -0.043 4.043 21 N -0.933 5.933 22 Si 0.970 3.030 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.269 1.269 26 C 0.147 3.853 27 C -0.126 4.126 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.048 0.952 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.415 0.585 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.069 0.931 44 H -0.001 1.001 45 H 0.252 0.748 46 H 0.015 0.985 47 H 0.060 0.940 48 H 0.062 0.938 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.619 2.579 -12.872 27.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.025 3.975 4 H 0.093 0.907 5 C -0.155 4.155 6 C -0.165 4.165 7 C -0.038 4.038 8 N -0.319 5.319 9 C 0.302 3.698 10 O -0.421 6.421 11 C 0.286 3.714 12 O -0.413 6.413 13 N -0.336 5.336 14 C 0.058 3.942 15 C -0.172 4.172 16 C 0.053 3.947 17 N -0.335 5.335 18 C -0.397 4.397 19 H 0.082 0.918 20 C -0.239 4.239 21 N -0.578 5.578 22 Si 0.797 3.203 23 H -0.212 1.212 24 H -0.219 1.219 25 H -0.194 1.194 26 C 0.021 3.979 27 C -0.166 4.166 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.124 0.876 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.127 0.873 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.252 0.748 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.017 0.983 45 H 0.061 0.939 46 H 0.033 0.967 47 H 0.078 0.922 48 H 0.081 0.919 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -24.361 2.736 -12.856 27.680 hybrid contribution 1.089 -0.630 1.033 1.628 sum -23.271 2.106 -11.824 26.188 Atomic orbital electron populations 1.21677 0.93049 1.02339 1.02846 1.21875 0.97929 0.95527 1.01974 1.22058 0.77727 0.97404 1.00309 0.90743 1.22773 0.98975 0.99408 0.94330 1.22848 0.92776 0.97724 1.03159 1.22888 0.98640 0.97058 0.85211 1.48529 1.08411 1.56658 1.18296 1.19772 0.87591 0.80100 0.82355 1.90724 1.71570 1.41768 1.38067 1.20234 0.88154 0.79924 0.83044 1.90684 1.71742 1.41745 1.37138 1.46011 1.08283 1.55950 1.23346 1.20894 0.77108 0.99101 0.97141 1.22333 0.98519 1.02205 0.94177 1.20632 0.87699 0.89981 0.96404 1.44271 1.40891 1.42641 1.05737 1.19445 1.04252 0.93142 1.22896 0.91782 1.26084 0.99715 0.96958 1.01107 1.70063 1.37573 1.16432 1.33761 0.85246 0.79589 0.78662 0.76770 1.21171 1.21855 1.19371 1.21057 0.92391 0.98532 0.85933 1.22287 0.96603 0.98220 0.99478 0.92602 0.90567 0.92345 0.91636 0.93284 0.87620 0.88988 0.90356 0.87296 0.89274 0.90701 0.74790 0.90908 0.91628 0.90677 0.91245 0.98328 0.93879 0.96669 0.92181 0.91950 0.91627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.68 71.98 0.70 -0.91 16 2 C -0.13 -2.25 5.40 30.60 0.17 -2.09 16 3 C 0.13 2.07 2.92 45.35 0.13 2.21 16 4 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 5 C -0.12 -1.05 5.71 31.79 0.18 -0.86 16 6 C -0.13 -1.32 7.09 31.99 0.23 -1.09 16 7 C 0.08 1.52 6.25 86.86 0.54 2.06 16 8 N -0.59 -12.88 3.06 -789.58 -2.42 -15.30 16 9 C 0.52 14.45 7.73 87.27 0.67 15.12 16 10 O -0.54 -16.89 15.26 -3.23 -0.05 -16.94 16 11 C 0.51 15.26 7.82 87.27 0.68 15.94 16 12 O -0.54 -17.69 13.37 -3.26 -0.04 -17.73 16 13 N -0.68 -20.45 5.07 -443.72 -2.25 -22.70 16 14 C 0.16 5.56 2.41 45.02 0.11 5.67 16 15 C -0.13 -4.90 5.55 30.67 0.17 -4.73 16 16 C 0.18 8.59 5.23 86.36 0.45 9.05 16 17 N -0.61 -30.82 2.98 -698.25 -2.08 -32.90 16 18 C -0.27 -14.64 9.54 84.03 0.80 -13.84 16 19 H 0.06 3.43 7.83 -2.91 -0.02 3.41 16 20 C -0.04 -2.37 5.27 84.86 0.45 -1.92 16 21 N -0.93 -54.47 10.79 21.65 0.23 -54.23 16 22 Si 0.97 44.50 29.55 68.60 2.03 46.53 16 23 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 24 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 26 C 0.15 6.26 6.54 86.51 0.57 6.83 16 27 C -0.13 -4.49 5.67 30.82 0.17 -4.31 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.63 16 29 H 0.08 0.56 7.64 -2.39 -0.02 0.54 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 1.05 8.03 -2.39 -0.02 1.03 16 32 H 0.05 1.14 6.55 -2.38 -0.02 1.12 16 33 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.09 0.64 7.77 -2.38 -0.02 0.62 16 35 H 0.08 0.82 8.14 -2.39 -0.02 0.81 16 36 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.09 2.02 5.85 -2.39 -0.01 2.01 16 38 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.42 11.37 8.07 -92.71 -0.75 10.63 16 40 H 0.07 2.74 7.58 -2.38 -0.02 2.73 16 41 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 42 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 43 H 0.07 3.76 6.08 -2.39 -0.01 3.75 16 44 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 45 H 0.25 14.23 8.31 -92.72 -0.77 13.46 16 46 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.06 2.49 7.93 -2.39 -0.02 2.47 16 48 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 49 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -66.46 381.73 1.63 -64.83 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: 0.19 Total: 21.33 kcal Atomic # 6 Polarization: 21.09 SS G_CDS: 6.02 Total: 27.11 kcal Atomic # 7 Polarization: -118.62 SS G_CDS: -6.52 Total: -125.13 kcal Atomic # 8 Polarization: -34.58 SS G_CDS: -0.09 Total: -34.67 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -66.46 1.63 -64.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003931845.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.188 kcal (2) G-P(sol) polarization free energy of solvation -66.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds