Wall clock time and date at job start Fri Apr 10 2020 18:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.30327 * 2 1 4 4 C 1.52926 * 109.30122 * 240.41480 * 2 1 3 5 5 C 1.53340 * 108.67510 * 189.14292 * 4 2 1 6 6 H 1.08998 * 109.67714 * 307.76018 * 5 4 2 7 7 C 1.50700 * 109.67255 * 187.26507 * 5 4 2 8 8 O 1.21283 * 119.99937 * 351.38588 * 7 5 4 9 9 N 1.34777 * 120.00058 * 171.38515 * 7 5 4 10 10 C 1.46500 * 120.00162 * 183.71154 * 9 7 5 11 11 C 1.46500 * 120.00192 * 3.70823 * 9 7 5 12 12 C 1.53035 * 109.46327 * 241.34763 * 11 9 7 13 13 C 1.53186 * 109.31492 * 178.61232 * 12 11 9 14 14 N 1.46926 * 108.77602 * 54.63500 * 13 12 11 15 15 C 1.36937 * 120.63186 * 126.37102 * 14 13 12 16 16 H 1.07998 * 119.99804 * 205.62319 * 15 14 13 17 17 C 1.38813 * 120.00087 * 25.61598 * 15 14 13 18 18 N 1.31620 * 120.00095 * 201.03737 * 17 15 14 19 19 Si 1.86802 * 119.99660 * 21.04292 * 17 15 14 20 20 H 1.48499 * 109.46947 * 265.33903 * 19 17 15 21 21 H 1.48496 * 109.47424 * 25.34190 * 19 17 15 22 22 H 1.48499 * 109.46777 * 145.34527 * 19 17 15 23 23 C 1.46924 * 118.73818 * 306.64581 * 14 13 12 24 24 C 1.52755 * 109.01024 * 53.30581 * 23 14 13 25 25 C 1.53068 * 108.42533 * 67.53305 * 5 4 2 26 26 C 1.50170 * 109.89456 * 311.11562 * 25 5 4 27 27 O 1.21284 * 118.24396 * 197.54310 * 26 25 5 28 28 N 1.33354 * 123.51368 * 17.54182 * 26 25 5 29 29 H 1.08996 * 109.47594 * 179.58529 * 1 2 3 30 30 H 1.08999 * 109.46832 * 299.58710 * 1 2 3 31 31 H 1.09000 * 109.47228 * 59.57761 * 1 2 3 32 32 H 1.09007 * 109.59970 * 69.38411 * 4 2 1 33 33 H 1.09000 * 109.73738 * 308.98624 * 4 2 1 34 34 H 1.08992 * 109.47022 * 275.36096 * 10 9 7 35 35 H 1.09009 * 109.47184 * 35.35666 * 10 9 7 36 36 H 1.08999 * 109.47387 * 155.35817 * 10 9 7 37 37 H 1.09008 * 109.44575 * 1.31068 * 11 9 7 38 38 H 1.09002 * 109.50041 * 58.65876 * 12 11 9 39 39 H 1.08997 * 109.49910 * 298.56768 * 12 11 9 40 40 H 1.08997 * 109.58825 * 294.84908 * 13 12 11 41 41 H 1.09007 * 109.59005 * 174.42194 * 13 12 11 42 42 H 0.97000 * 119.99903 * 180.02562 * 18 17 15 43 43 H 1.08994 * 109.58721 * 173.14496 * 23 14 13 44 44 H 1.09002 * 109.58725 * 293.56804 * 23 14 13 45 45 H 1.08998 * 109.56981 * 185.55798 * 24 23 14 46 46 H 1.08997 * 109.36200 * 65.49940 * 24 23 14 47 47 H 1.09004 * 109.40311 * 71.22788 * 25 5 4 48 48 H 1.09001 * 109.39896 * 190.97041 * 25 5 4 49 49 H 0.96992 * 117.94565 * 177.80048 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8903 1.0287 0.0000 4 6 2.0354 -0.7126 -1.2551 5 6 3.5513 -0.9081 -1.1319 6 1 4.0265 0.0449 -0.8993 7 6 4.1005 -1.4457 -2.4282 8 8 3.3435 -1.8009 -3.3066 9 7 5.4330 -1.5319 -2.6113 10 6 5.9680 -1.9776 -3.9003 11 6 6.3465 -1.1797 -1.5215 12 6 7.2270 -0.0050 -1.9537 13 6 8.1567 0.3828 -0.7996 14 7 8.9053 -0.8080 -0.3748 15 6 10.2728 -0.7854 -0.3079 16 1 10.8335 -1.7031 -0.4069 17 6 10.9384 0.4171 -0.1129 18 7 12.2052 0.5306 -0.4517 19 14 10.0362 1.8741 0.6305 20 1 9.5129 2.7395 -0.4569 21 1 8.9065 1.3854 1.4612 22 1 10.9721 2.6557 1.4781 23 6 8.1589 -2.0254 -0.0290 24 6 7.2288 -2.3844 -1.1863 25 6 3.8201 -1.9077 -0.0043 26 6 3.0431 -1.5179 1.2202 27 8 3.3750 -1.9925 2.2858 28 7 2.0077 -0.6778 1.1987 29 1 -0.3634 -1.0276 -0.0074 30 1 -0.3633 0.5074 0.8937 31 1 -0.3634 0.5204 -0.8862 32 1 1.8150 -0.1061 -2.1337 33 1 1.5479 -1.6829 -1.3491 34 1 5.9937 -3.0669 -3.9258 35 1 5.3307 -1.6103 -4.7048 36 1 6.9775 -1.5872 -4.0293 37 1 5.7692 -0.8963 -0.6414 38 1 6.5969 0.8453 -2.2146 39 1 7.8228 -0.2958 -2.8188 40 1 7.5656 0.7598 0.0350 41 1 8.8530 1.1521 -1.1339 42 1 12.6703 1.3707 -0.3151 43 1 8.8565 -2.8446 0.1451 44 1 7.5679 -1.8488 0.8697 45 1 6.5999 -3.2277 -0.9011 46 1 7.8245 -2.6529 -2.0587 47 1 3.5158 -2.9044 -0.3238 48 1 4.8849 -1.9128 0.2287 49 1 1.5432 -0.5073 2.0329 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005646432.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:32 Heat of formation + Delta-G solvation = -70.159947 kcal Electronic energy + Delta-G solvation = -29572.855184 eV Core-core repulsion = 25727.418322 eV Total energy + Delta-G solvation = -3845.436863 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.09691 -40.73898 -39.39545 -37.82251 -36.67945 -34.56615 -34.19347 -32.10491 -32.00793 -31.90993 -28.62034 -28.23528 -26.90359 -24.83361 -24.45884 -23.57656 -23.28779 -21.19441 -20.37602 -19.95967 -18.85984 -18.37529 -18.20402 -17.43266 -17.21676 -16.83219 -16.29631 -16.16816 -15.92642 -15.45878 -15.34597 -15.23542 -15.04661 -14.83284 -14.56067 -14.21864 -14.14405 -13.78121 -13.70831 -13.62656 -13.42947 -13.13664 -13.03470 -12.63124 -12.58118 -12.42914 -12.36908 -12.19733 -12.10882 -11.95951 -11.91996 -11.74338 -11.48520 -11.39367 -11.26856 -10.74765 -10.59139 -10.11807 -9.68220 -8.97341 -8.14125 -5.44891 1.30349 1.44506 1.46675 1.52218 1.55982 1.91530 2.25410 2.43140 3.06888 3.16156 3.35923 3.49882 3.56022 3.65609 3.68718 3.89928 3.94481 4.07088 4.14376 4.26741 4.30787 4.35519 4.42912 4.48371 4.55136 4.59824 4.61690 4.65928 4.73205 4.80242 4.87194 4.91373 4.92453 4.94699 5.02050 5.04373 5.07970 5.17388 5.20698 5.34579 5.36099 5.53290 5.81093 5.87455 6.14132 6.28321 6.33788 6.92713 7.06928 7.15380 7.64142 8.02120 9.05685 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.014665 B = 0.004069 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.869308 B = 6879.066442 C = 7688.626275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.135 3.865 3 H 0.096 0.904 4 C -0.106 4.106 5 C -0.109 4.109 6 H 0.118 0.882 7 C 0.523 3.477 8 O -0.568 6.568 9 N -0.602 5.602 10 C 0.084 3.916 11 C 0.142 3.858 12 C -0.134 4.134 13 C 0.121 3.879 14 N -0.619 5.619 15 C -0.246 4.246 16 H 0.053 0.947 17 C -0.037 4.037 18 N -0.959 5.959 19 Si 0.944 3.056 20 H -0.272 1.272 21 H -0.257 1.257 22 H -0.316 1.316 23 C 0.145 3.855 24 C -0.133 4.133 25 C -0.130 4.130 26 C 0.524 3.476 27 O -0.600 6.600 28 N -0.705 5.705 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.107 0.893 38 H 0.083 0.917 39 H 0.063 0.937 40 H 0.040 0.960 41 H 0.052 0.948 42 H 0.260 0.740 43 H 0.058 0.942 44 H 0.038 0.962 45 H 0.084 0.916 46 H 0.062 0.938 47 H 0.109 0.891 48 H 0.110 0.890 49 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.697 0.050 -3.080 25.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.032 3.968 3 H 0.114 0.886 4 C -0.144 4.144 5 C -0.130 4.130 6 H 0.136 0.864 7 C 0.312 3.688 8 O -0.448 6.448 9 N -0.332 5.332 10 C -0.058 4.058 11 C 0.039 3.961 12 C -0.174 4.174 13 C -0.004 4.004 14 N -0.343 5.343 15 C -0.375 4.375 16 H 0.071 0.929 17 C -0.231 4.231 18 N -0.605 5.605 19 Si 0.773 3.227 20 H -0.199 1.199 21 H -0.181 1.181 22 H -0.245 1.245 23 C 0.020 3.980 24 C -0.173 4.173 25 C -0.170 4.170 26 C 0.312 3.688 27 O -0.483 6.483 28 N -0.357 5.357 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.118 0.882 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.124 0.876 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.056 0.944 45 H 0.102 0.898 46 H 0.081 0.919 47 H 0.127 0.873 48 H 0.128 0.872 49 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -25.693 -0.348 -3.249 25.900 hybrid contribution 0.572 0.672 0.602 1.068 sum -25.122 0.324 -2.647 25.263 Atomic orbital electron populations 1.22133 0.92240 1.03147 1.04229 1.21221 0.96127 0.96545 0.82942 0.88573 1.21776 0.91536 1.02809 0.98277 1.21485 0.99189 1.00757 0.91580 0.86438 1.20677 0.81585 0.77518 0.89066 1.90678 1.57830 1.50438 1.45809 1.48067 1.05499 1.65385 1.14273 1.21645 0.99831 0.99968 0.84346 1.21327 0.90497 0.94804 0.89447 1.22293 0.97831 0.98360 0.98949 1.21392 0.93934 0.89707 0.95388 1.44491 1.01984 1.10324 1.77537 1.18877 0.81760 0.94513 1.42389 0.92905 1.25854 0.95921 1.00683 1.00683 1.69974 1.12405 1.26973 1.51196 0.85966 0.77895 0.79905 0.78938 1.19918 1.18110 1.24544 1.20964 0.93656 0.88311 0.95062 1.22194 0.97862 0.97438 0.99791 1.21817 1.02380 1.01118 0.91658 1.20126 0.80467 0.78059 0.90184 1.90779 1.68865 1.55876 1.32731 1.45689 1.31540 1.45132 1.13304 0.92333 0.90759 0.89363 0.88180 0.90689 0.92327 0.91170 0.90427 0.87587 0.89848 0.91870 0.94241 0.93017 0.93058 0.92325 0.94414 0.89772 0.91931 0.87298 0.87232 0.75861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.02 9.39 71.98 0.68 -0.34 16 2 C 0.14 1.32 3.68 45.11 0.17 1.49 16 3 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 4 C -0.11 -1.39 3.92 30.68 0.12 -1.27 16 5 C -0.11 -1.82 1.72 -11.40 -0.02 -1.84 16 6 H 0.12 1.72 7.49 -2.39 -0.02 1.70 16 7 C 0.52 11.58 6.96 87.66 0.61 12.19 16 8 O -0.57 -15.68 15.72 -3.04 -0.05 -15.73 16 9 N -0.60 -13.45 2.76 -822.43 -2.27 -15.72 16 10 C 0.08 1.83 9.35 127.77 1.19 3.02 16 11 C 0.14 3.46 1.72 45.02 0.08 3.53 16 12 C -0.13 -3.86 5.34 30.67 0.16 -3.70 16 13 C 0.12 4.61 4.19 86.36 0.36 4.98 16 14 N -0.62 -27.06 2.80 -699.95 -1.96 -29.02 16 15 C -0.25 -13.46 10.05 84.03 0.84 -12.61 16 16 H 0.05 3.18 8.04 -2.91 -0.02 3.16 16 17 C -0.04 -2.11 5.24 84.86 0.44 -1.67 16 18 N -0.96 -59.49 13.97 21.65 0.30 -59.19 16 19 Si 0.94 44.99 24.33 68.60 1.67 46.66 16 20 H -0.27 -12.09 6.67 99.48 0.66 -11.42 16 21 H -0.26 -11.57 6.47 99.48 0.64 -10.93 16 22 H -0.32 -15.63 7.11 99.48 0.71 -14.92 16 23 C 0.15 5.10 6.49 86.22 0.56 5.66 16 24 C -0.13 -3.61 5.12 30.53 0.16 -3.45 16 25 C -0.13 -2.49 4.92 29.70 0.15 -2.34 16 26 C 0.52 11.55 7.71 87.71 0.68 12.23 16 27 O -0.60 -18.96 17.78 -3.04 -0.05 -19.01 16 28 N -0.71 -10.50 5.12 -446.64 -2.29 -12.79 16 29 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.10 1.23 8.04 -2.38 -0.02 1.21 16 33 H 0.07 1.13 8.11 -2.39 -0.02 1.11 16 34 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.07 1.52 7.65 -2.38 -0.02 1.50 16 36 H 0.08 1.68 6.54 -2.39 -0.02 1.67 16 37 H 0.11 2.36 3.96 -2.38 -0.01 2.35 16 38 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.06 1.96 6.78 -2.39 -0.02 1.94 16 40 H 0.04 1.43 7.03 -2.39 -0.02 1.41 16 41 H 0.05 2.24 4.33 -2.38 -0.01 2.23 16 42 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 43 H 0.06 2.15 7.92 -2.39 -0.02 2.13 16 44 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.06 1.82 7.69 -2.39 -0.02 1.80 16 47 H 0.11 2.04 8.09 -2.39 -0.02 2.02 16 48 H 0.11 2.27 5.48 -2.39 -0.01 2.26 16 49 H 0.40 5.35 8.66 -92.71 -0.80 4.55 16 Total: -1.00 -73.93 367.80 1.58 -72.36 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.05 Total: 16.56 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: 6.18 Total: 15.87 kcal Atomic # 7 Polarization: -110.49 SS G_CDS: -6.22 Total: -116.71 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -0.10 Total: -34.74 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.67 Total: 46.66 kcal Total: -73.93 1.58 -72.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005646432.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.195 kcal (2) G-P(sol) polarization free energy of solvation -73.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds