Wall clock time and date at job start Fri Apr 10 2020 18:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47290 * 2 1 4 4 O 1.21280 * 119.99808 * 0.02562 * 3 2 1 5 5 N 1.34772 * 119.99949 * 179.97438 * 3 2 1 6 6 C 1.46923 * 120.63343 * 0.03442 * 5 3 2 7 7 C 1.53195 * 108.77575 * 233.58368 * 6 5 3 8 8 C 1.53046 * 109.30793 * 305.36150 * 7 6 5 9 9 C 1.53043 * 109.53700 * 61.36640 * 8 7 6 10 10 H 1.09000 * 109.49738 * 58.58741 * 9 8 7 11 11 C 1.50704 * 109.49535 * 178.68307 * 9 8 7 12 12 O 1.21290 * 119.99868 * 359.97438 * 11 9 8 13 13 N 1.34770 * 119.99961 * 180.02562 * 11 9 8 14 14 C 1.46504 * 119.99854 * 179.97438 * 13 11 9 15 15 H 1.08998 * 112.85066 * 334.66465 * 14 13 11 16 16 C 1.53786 * 113.61111 * 105.86429 * 14 13 11 17 17 C 1.54045 * 86.98677 * 89.15933 * 16 14 13 18 18 H 1.09006 * 113.62021 * 139.97116 * 17 16 14 19 19 N 1.46496 * 113.68995 * 270.87025 * 17 16 14 20 20 C 1.36941 * 119.99995 * 252.53163 * 19 17 16 21 21 H 1.07994 * 119.99810 * 359.97438 * 20 19 17 22 22 C 1.38810 * 120.00050 * 180.02562 * 20 19 17 23 23 N 1.31627 * 119.99748 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00131 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47263 * 89.99731 * 24 22 20 26 26 H 1.48500 * 109.47286 * 209.99804 * 24 22 20 27 27 H 1.48503 * 109.47129 * 329.99725 * 24 22 20 28 28 C 1.53780 * 113.61276 * 203.46634 * 14 13 11 29 29 C 1.46931 * 120.62926 * 180.02562 * 5 3 2 30 30 H 1.09000 * 109.47159 * 299.99407 * 1 2 3 31 31 H 1.08998 * 109.47433 * 59.99769 * 1 2 3 32 32 H 1.09005 * 109.47697 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46880 * 240.00141 * 2 1 3 34 34 H 1.09001 * 109.47139 * 120.00655 * 2 1 3 35 35 H 1.08996 * 109.59375 * 113.79430 * 6 5 3 36 36 H 1.09006 * 109.58686 * 353.36430 * 6 5 3 37 37 H 1.08990 * 109.49959 * 185.41234 * 7 6 5 38 38 H 1.08999 * 109.49609 * 65.30943 * 7 6 5 39 39 H 1.08998 * 109.45610 * 181.38442 * 8 7 6 40 40 H 1.08998 * 109.46061 * 301.35805 * 8 7 6 41 41 H 0.96998 * 120.00263 * 359.97438 * 13 11 9 42 42 H 1.09004 * 113.60972 * 203.66284 * 16 14 13 43 43 H 1.09002 * 113.61509 * 334.56267 * 16 14 13 44 44 H 0.97001 * 120.00361 * 72.53212 * 19 17 16 45 45 H 0.97001 * 119.99520 * 180.02562 * 23 22 20 46 46 H 1.09004 * 113.61411 * 25.43476 * 28 14 13 47 47 H 1.08997 * 113.61485 * 156.33366 * 28 14 13 48 48 H 1.09001 * 109.58511 * 6.62918 * 29 5 3 49 49 H 1.09004 * 109.58611 * 246.20718 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6670 0.0005 6 6 4.3244 0.5609 0.0003 7 6 5.2968 0.7558 1.1679 8 6 5.9312 2.1453 1.0715 9 6 4.8399 3.2140 1.1681 10 1 4.3037 3.1022 2.1105 11 6 5.4688 4.5821 1.1056 12 8 6.6717 4.6921 0.9951 13 7 4.6948 5.6832 1.1734 14 6 5.3062 7.0132 1.1132 15 1 6.3430 7.0180 1.4495 16 6 5.0910 7.7299 -0.2303 17 6 3.7914 8.2961 0.3726 18 1 3.6057 9.3377 0.1101 19 7 2.6223 7.4390 0.1615 20 6 1.6551 7.8088 -0.7346 21 1 1.7540 8.7325 -1.2854 22 6 0.5470 6.9969 -0.9343 23 7 0.4262 5.8714 -0.2626 24 14 -0.7727 7.5017 -2.1562 25 1 -0.4410 6.9556 -3.4968 26 1 -2.0861 6.9673 -1.7151 27 1 -0.8400 8.9834 -2.2281 28 6 4.4461 8.1161 1.7524 29 6 3.8624 3.0468 0.0011 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3635 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 4.8771 0.5588 -0.9391 36 1 3.7968 -0.3857 0.1184 37 1 6.0768 -0.0041 1.1226 38 1 4.7562 0.6673 2.1102 39 1 6.6419 2.2773 1.8873 40 1 6.4505 2.2420 0.1181 41 1 3.7329 5.5953 1.2621 42 1 5.8411 8.4913 -0.4441 43 1 4.9262 7.0501 -1.0663 44 1 2.5332 6.6096 0.6564 45 1 -0.3479 5.3039 -0.4025 46 1 3.7610 7.7480 2.5161 47 1 5.0202 8.9829 2.0798 48 1 3.0300 3.7405 0.1196 49 1 4.3774 3.2478 -0.9384 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022131603.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:26 Heat of formation + Delta-G solvation = -41.665061 kcal Electronic energy + Delta-G solvation = -29241.968448 eV Core-core repulsion = 25397.767217 eV Total energy + Delta-G solvation = -3844.201232 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 3.86 seconds Orbital eigenvalues (eV) -40.45680 -39.53657 -38.13158 -36.79798 -33.57390 -33.23387 -32.59965 -32.37488 -30.98073 -29.73393 -25.90026 -25.11794 -25.08047 -24.11066 -23.14771 -22.52274 -21.08447 -19.77495 -18.87612 -18.68206 -17.40888 -17.13593 -16.43660 -15.84473 -15.71224 -15.39978 -14.93750 -14.71283 -14.38942 -14.20244 -13.95678 -13.67574 -13.60109 -13.28312 -13.10584 -12.88588 -12.65632 -12.48175 -12.16254 -12.01866 -11.88188 -11.70496 -11.44462 -11.40639 -11.12343 -11.01665 -10.94467 -10.82992 -10.73768 -10.55292 -10.14816 -10.11758 -9.80369 -9.58197 -9.52355 -9.32693 -8.84005 -8.54096 -8.47402 -6.95915 -5.70864 -3.02414 2.79225 2.94466 3.15496 3.47001 3.50725 3.53526 3.54722 4.53073 4.59865 4.65742 4.80006 4.82948 4.98242 5.07340 5.08005 5.12151 5.15561 5.26345 5.31239 5.39005 5.45210 5.52781 5.56232 5.61910 5.72327 5.76446 5.78101 5.89433 5.92243 5.98646 6.00702 6.01387 6.16736 6.26028 6.28022 6.31715 6.32535 6.35844 6.60313 6.62908 6.74629 6.87361 7.15882 7.56693 7.76958 7.92011 8.44073 8.48616 8.56632 9.55274 10.07820 10.41379 11.49882 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.008666 B = 0.005733 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3230.366528 B = 4882.630887 C = 7747.979325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.140 4.140 3 C 0.498 3.502 4 O -0.498 6.498 5 N -0.616 5.616 6 C 0.106 3.894 7 C -0.135 4.135 8 C -0.097 4.097 9 C -0.121 4.121 10 H 0.098 0.902 11 C 0.523 3.477 12 O -0.552 6.552 13 N -0.698 5.698 14 C 0.123 3.877 15 H 0.089 0.911 16 C -0.187 4.187 17 C 0.166 3.834 18 H 0.065 0.935 19 N -0.702 5.702 20 C -0.257 4.257 21 H 0.071 0.929 22 C -0.004 4.004 23 N -0.913 5.913 24 Si 0.904 3.096 25 H -0.291 1.291 26 H -0.292 1.292 27 H -0.283 1.283 28 C -0.169 4.169 29 C 0.120 3.880 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.409 0.591 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.378 0.622 45 H 0.261 0.739 46 H 0.070 0.930 47 H 0.089 0.911 48 H 0.116 0.884 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.810 -12.817 4.044 16.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.180 4.180 3 C 0.285 3.715 4 O -0.370 6.370 5 N -0.352 5.352 6 C -0.017 4.017 7 C -0.173 4.173 8 C -0.135 4.135 9 C -0.143 4.143 10 H 0.116 0.884 11 C 0.309 3.691 12 O -0.430 6.430 13 N -0.351 5.351 14 C 0.017 3.983 15 H 0.107 0.893 16 C -0.230 4.230 17 C 0.053 3.947 18 H 0.083 0.917 19 N -0.342 5.342 20 C -0.388 4.388 21 H 0.089 0.911 22 C -0.202 4.202 23 N -0.559 5.559 24 Si 0.735 3.265 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.209 1.209 28 C -0.208 4.208 29 C -0.003 4.003 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.247 0.753 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.213 0.787 45 H 0.071 0.929 46 H 0.088 0.912 47 H 0.107 0.893 48 H 0.134 0.866 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.002 -12.165 3.846 15.615 hybrid contribution -1.031 -0.166 -0.523 1.168 sum 7.971 -12.331 3.323 15.055 Atomic orbital electron populations 1.21539 0.93082 1.01101 1.03823 1.21631 0.98565 0.94280 1.03512 1.20850 0.81782 0.92002 0.76878 1.90943 1.53936 1.45676 1.46460 1.48060 1.05597 1.06586 1.74917 1.21739 0.91237 0.89921 0.98836 1.21952 0.98801 0.97666 0.98870 1.21312 0.96435 0.92203 1.03593 1.21695 0.98090 0.92878 1.01650 0.88402 1.20353 0.87035 0.85988 0.75735 1.90644 1.14662 1.87384 1.50326 1.45953 1.11287 1.05054 1.72759 1.21769 0.96869 0.81461 0.98165 0.89301 1.24340 1.01096 1.00264 0.97255 1.21223 0.86734 0.94941 0.91767 0.91693 1.42166 1.19759 1.23504 1.48818 1.19157 0.98786 1.04751 1.16121 0.91131 1.24763 0.98502 0.97009 0.99892 1.69565 1.30711 1.12335 1.43279 0.86262 0.81693 0.77512 0.81030 1.21845 1.21814 1.20896 1.23872 0.99343 0.97970 0.99659 1.21521 0.98180 0.84139 0.96411 0.91803 0.91815 0.92498 0.89448 0.89405 0.91424 0.89738 0.90450 0.91398 0.90966 0.91029 0.75256 0.90596 0.91171 0.78687 0.92890 0.91153 0.89250 0.86624 0.91442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.20 37.16 0.34 -1.26 16 2 C -0.14 -1.48 4.77 -27.88 -0.13 -1.62 16 3 C 0.50 7.71 7.70 -10.99 -0.08 7.62 16 4 O -0.50 -10.56 15.39 5.56 0.09 -10.48 16 5 N -0.62 -8.38 2.97 -172.79 -0.51 -8.89 16 6 C 0.11 0.98 6.34 -3.71 -0.02 0.96 16 7 C -0.13 -1.18 6.08 -26.61 -0.16 -1.34 16 8 C -0.10 -1.15 4.46 -26.68 -0.12 -1.26 16 9 C -0.12 -1.72 2.67 -91.67 -0.25 -1.96 16 10 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 11 C 0.52 8.89 7.16 -10.99 -0.08 8.81 16 12 O -0.55 -10.58 15.60 5.55 0.09 -10.50 16 13 N -0.70 -12.24 5.03 -53.01 -0.27 -12.50 16 14 C 0.12 2.09 4.30 -67.11 -0.29 1.80 16 15 H 0.09 1.49 7.50 -51.93 -0.39 1.10 16 16 C -0.19 -3.38 7.70 -25.78 -0.20 -3.58 16 17 C 0.17 3.26 4.57 -66.98 -0.31 2.96 16 18 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 19 N -0.70 -17.00 5.18 -52.50 -0.27 -17.27 16 20 C -0.26 -7.05 9.97 -15.06 -0.15 -7.20 16 21 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 22 C 0.00 -0.10 5.50 -17.43 -0.10 -0.20 16 23 N -0.91 -27.00 13.06 55.49 0.72 -26.28 16 24 Si 0.90 22.65 29.55 -169.99 -5.02 17.63 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 26 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 27 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 28 C -0.17 -2.75 7.58 -25.92 -0.20 -2.95 16 29 C 0.12 1.93 5.57 -3.73 -0.02 1.91 16 30 H 0.06 0.83 8.10 -51.93 -0.42 0.41 16 31 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.75 7.94 -51.93 -0.41 0.33 16 34 H 0.09 0.72 7.69 -51.93 -0.40 0.32 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.58 5.93 -51.93 -0.31 0.27 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.86 8.07 -51.93 -0.42 0.44 16 40 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 41 H 0.41 7.71 5.72 -40.82 -0.23 7.47 16 42 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 44 H 0.38 9.40 5.35 -40.82 -0.22 9.18 16 45 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 46 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 47 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 48 H 0.12 2.34 6.61 -51.93 -0.34 1.99 16 49 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 386.47 15.07 5.82 5.82 Total: -1.00 -33.23 386.47 -9.30 -42.53 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: -8.18 Total: 17.24 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -1.76 Total: 2.70 kcal Atomic # 7 Polarization: -64.61 SS G_CDS: -0.33 Total: -64.94 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: 0.17 Total: -20.97 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.23 -9.30 -42.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022131603.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.863 kcal (2) G-P(sol) polarization free energy of solvation -33.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.86 seconds