Wall clock time and date at job start Fri Apr 10 2020 18:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47290 * 2 1 4 4 O 1.21280 * 119.99808 * 0.02562 * 3 2 1 5 5 N 1.34772 * 119.99949 * 179.97438 * 3 2 1 6 6 C 1.46923 * 120.63343 * 0.03442 * 5 3 2 7 7 C 1.53195 * 108.77575 * 233.58368 * 6 5 3 8 8 C 1.53046 * 109.30793 * 305.36150 * 7 6 5 9 9 C 1.53043 * 109.53700 * 61.36640 * 8 7 6 10 10 H 1.09000 * 109.49738 * 58.58741 * 9 8 7 11 11 C 1.50704 * 109.49535 * 178.68307 * 9 8 7 12 12 O 1.21290 * 119.99868 * 359.97438 * 11 9 8 13 13 N 1.34770 * 119.99961 * 180.02562 * 11 9 8 14 14 C 1.46504 * 119.99854 * 179.97438 * 13 11 9 15 15 H 1.08998 * 112.85066 * 334.66465 * 14 13 11 16 16 C 1.53786 * 113.61111 * 105.86429 * 14 13 11 17 17 C 1.54045 * 86.98677 * 89.15933 * 16 14 13 18 18 H 1.09006 * 113.62021 * 139.97116 * 17 16 14 19 19 N 1.46496 * 113.68995 * 270.87025 * 17 16 14 20 20 C 1.36941 * 119.99995 * 252.53163 * 19 17 16 21 21 H 1.07994 * 119.99810 * 359.97438 * 20 19 17 22 22 C 1.38810 * 120.00050 * 180.02562 * 20 19 17 23 23 N 1.31627 * 119.99748 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00131 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47263 * 89.99731 * 24 22 20 26 26 H 1.48500 * 109.47286 * 209.99804 * 24 22 20 27 27 H 1.48503 * 109.47129 * 329.99725 * 24 22 20 28 28 C 1.53780 * 113.61276 * 203.46634 * 14 13 11 29 29 C 1.46931 * 120.62926 * 180.02562 * 5 3 2 30 30 H 1.09000 * 109.47159 * 299.99407 * 1 2 3 31 31 H 1.08998 * 109.47433 * 59.99769 * 1 2 3 32 32 H 1.09005 * 109.47697 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46880 * 240.00141 * 2 1 3 34 34 H 1.09001 * 109.47139 * 120.00655 * 2 1 3 35 35 H 1.08996 * 109.59375 * 113.79430 * 6 5 3 36 36 H 1.09006 * 109.58686 * 353.36430 * 6 5 3 37 37 H 1.08990 * 109.49959 * 185.41234 * 7 6 5 38 38 H 1.08999 * 109.49609 * 65.30943 * 7 6 5 39 39 H 1.08998 * 109.45610 * 181.38442 * 8 7 6 40 40 H 1.08998 * 109.46061 * 301.35805 * 8 7 6 41 41 H 0.96998 * 120.00263 * 359.97438 * 13 11 9 42 42 H 1.09004 * 113.60972 * 203.66284 * 16 14 13 43 43 H 1.09002 * 113.61509 * 334.56267 * 16 14 13 44 44 H 0.97001 * 120.00361 * 72.53212 * 19 17 16 45 45 H 0.97001 * 119.99520 * 180.02562 * 23 22 20 46 46 H 1.09004 * 113.61411 * 25.43476 * 28 14 13 47 47 H 1.08997 * 113.61485 * 156.33366 * 28 14 13 48 48 H 1.09001 * 109.58511 * 6.62918 * 29 5 3 49 49 H 1.09004 * 109.58611 * 246.20718 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6670 0.0005 6 6 4.3244 0.5609 0.0003 7 6 5.2968 0.7558 1.1679 8 6 5.9312 2.1453 1.0715 9 6 4.8399 3.2140 1.1681 10 1 4.3037 3.1022 2.1105 11 6 5.4688 4.5821 1.1056 12 8 6.6717 4.6921 0.9951 13 7 4.6948 5.6832 1.1734 14 6 5.3062 7.0132 1.1132 15 1 6.3430 7.0180 1.4495 16 6 5.0910 7.7299 -0.2303 17 6 3.7914 8.2961 0.3726 18 1 3.6057 9.3377 0.1101 19 7 2.6223 7.4390 0.1615 20 6 1.6551 7.8088 -0.7346 21 1 1.7540 8.7325 -1.2854 22 6 0.5470 6.9969 -0.9343 23 7 0.4262 5.8714 -0.2626 24 14 -0.7727 7.5017 -2.1562 25 1 -0.4410 6.9556 -3.4968 26 1 -2.0861 6.9673 -1.7151 27 1 -0.8400 8.9834 -2.2281 28 6 4.4461 8.1161 1.7524 29 6 3.8624 3.0468 0.0011 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3635 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 4.8771 0.5588 -0.9391 36 1 3.7968 -0.3857 0.1184 37 1 6.0768 -0.0041 1.1226 38 1 4.7562 0.6673 2.1102 39 1 6.6419 2.2773 1.8873 40 1 6.4505 2.2420 0.1181 41 1 3.7329 5.5953 1.2621 42 1 5.8411 8.4913 -0.4441 43 1 4.9262 7.0501 -1.0663 44 1 2.5332 6.6096 0.6564 45 1 -0.3479 5.3039 -0.4025 46 1 3.7610 7.7480 2.5161 47 1 5.0202 8.9829 2.0798 48 1 3.0300 3.7405 0.1196 49 1 4.3774 3.2478 -0.9384 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022131603.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:24 Heat of formation + Delta-G solvation = -64.537059 kcal Electronic energy + Delta-G solvation = -29242.960253 eV Core-core repulsion = 25397.767217 eV Total energy + Delta-G solvation = -3845.193036 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 4.18 seconds Orbital eigenvalues (eV) -41.72171 -40.84979 -39.55921 -38.01170 -35.46124 -34.48102 -34.00865 -33.34716 -32.19427 -31.57769 -26.99526 -26.60182 -26.47466 -25.72349 -24.28823 -23.88407 -22.24817 -21.11495 -20.33538 -19.79555 -19.21713 -18.41861 -17.79530 -17.04734 -16.98583 -16.67430 -16.50511 -16.12355 -15.91541 -15.58815 -15.11854 -14.96916 -14.83187 -14.75060 -14.54683 -14.31089 -13.68399 -13.67549 -13.51802 -13.34023 -13.20482 -13.01803 -12.83320 -12.67234 -12.56311 -12.48003 -12.17111 -12.01156 -11.95375 -11.86220 -11.76615 -11.72239 -11.61805 -11.15911 -10.95945 -10.80858 -10.60729 -9.97867 -9.63624 -8.97939 -7.88323 -5.18486 1.44079 1.44864 1.45270 1.53945 1.76968 2.01526 2.21207 2.56147 3.41103 3.50848 3.55881 3.67814 3.75697 3.80826 3.89001 3.99297 4.06397 4.13510 4.17277 4.21461 4.28263 4.30992 4.39399 4.51155 4.60886 4.70366 4.78344 4.81069 4.85524 4.86587 4.92830 4.94619 4.97106 5.05050 5.07283 5.09607 5.16146 5.21902 5.35938 5.36985 5.39375 5.53939 5.54285 5.70698 6.28745 6.47127 6.49783 7.13501 7.33198 7.36834 8.10581 8.32555 9.30292 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.008666 B = 0.005733 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3230.366528 B = 4882.630887 C = 7747.979325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.486 3.514 4 O -0.571 6.571 5 N -0.611 5.611 6 C 0.098 3.902 7 C -0.125 4.125 8 C -0.094 4.094 9 C -0.110 4.110 10 H 0.102 0.898 11 C 0.520 3.480 12 O -0.572 6.572 13 N -0.703 5.703 14 C 0.121 3.879 15 H 0.100 0.900 16 C -0.177 4.177 17 C 0.146 3.854 18 H 0.069 0.931 19 N -0.715 5.715 20 C -0.254 4.254 21 H 0.074 0.926 22 C -0.063 4.063 23 N -0.939 5.939 24 Si 0.961 3.039 25 H -0.295 1.295 26 H -0.299 1.299 27 H -0.267 1.267 28 C -0.146 4.146 29 C 0.129 3.871 30 H 0.039 0.961 31 H 0.034 0.966 32 H 0.093 0.907 33 H 0.120 0.880 34 H 0.125 0.875 35 H 0.077 0.923 36 H 0.122 0.878 37 H 0.112 0.888 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.401 0.599 42 H 0.107 0.893 43 H 0.036 0.964 44 H 0.371 0.629 45 H 0.248 0.752 46 H 0.062 0.938 47 H 0.128 0.872 48 H 0.065 0.935 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.670 -14.449 4.587 18.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.276 3.724 4 O -0.449 6.449 5 N -0.346 5.346 6 C -0.023 4.023 7 C -0.163 4.163 8 C -0.132 4.132 9 C -0.132 4.132 10 H 0.120 0.880 11 C 0.307 3.693 12 O -0.452 6.452 13 N -0.354 5.354 14 C 0.016 3.984 15 H 0.118 0.882 16 C -0.219 4.219 17 C 0.035 3.965 18 H 0.087 0.913 19 N -0.355 5.355 20 C -0.386 4.386 21 H 0.092 0.908 22 C -0.258 4.258 23 N -0.587 5.587 24 Si 0.791 3.209 25 H -0.223 1.223 26 H -0.226 1.226 27 H -0.192 1.192 28 C -0.185 4.185 29 C 0.005 3.995 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.111 0.889 33 H 0.138 0.862 34 H 0.143 0.857 35 H 0.095 0.905 36 H 0.140 0.860 37 H 0.130 0.870 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.238 0.762 42 H 0.125 0.875 43 H 0.055 0.945 44 H 0.205 0.795 45 H 0.057 0.943 46 H 0.081 0.919 47 H 0.146 0.854 48 H 0.084 0.916 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.944 -13.786 4.391 18.141 hybrid contribution -1.506 0.414 -0.716 1.718 sum 9.437 -13.372 3.676 16.774 Atomic orbital electron populations 1.21543 0.94229 1.02512 1.01275 1.21701 0.97472 0.90894 1.06676 1.21912 0.81696 0.93539 0.75289 1.90924 1.55839 1.48215 1.49916 1.48209 1.06120 1.06537 1.73696 1.22157 0.90858 0.89583 0.99719 1.21949 0.99382 0.96223 0.98778 1.21334 0.95493 0.93161 1.03177 1.21660 0.98446 0.92276 1.00817 0.87968 1.20836 0.86776 0.86807 0.74865 1.90620 1.15414 1.87803 1.51371 1.46092 1.10888 1.05787 1.72636 1.21864 0.97515 0.81478 0.97573 0.88239 1.24252 1.00796 1.00364 0.96491 1.21531 0.85934 0.94310 0.94681 0.91331 1.42309 1.20792 1.24026 1.48404 1.19493 0.99033 1.04294 1.15749 0.90785 1.25470 1.00806 0.97419 1.02081 1.69749 1.30643 1.13308 1.45026 0.85334 0.78978 0.77835 0.78707 1.22266 1.22631 1.19223 1.23772 0.98599 0.98868 0.97242 1.21124 0.96534 0.85288 0.96550 0.94200 0.94696 0.88858 0.86239 0.85665 0.90480 0.86012 0.87002 0.90823 0.90777 0.91888 0.76184 0.87456 0.94461 0.79470 0.94341 0.91907 0.85374 0.91610 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 9.20 71.98 0.66 -2.47 16 2 C -0.13 -2.42 4.77 29.85 0.14 -2.28 16 3 C 0.49 15.30 7.70 87.66 0.67 15.98 16 4 O -0.57 -26.18 15.39 -3.03 -0.05 -26.23 16 5 N -0.61 -16.50 2.97 -818.98 -2.43 -18.94 16 6 C 0.10 1.50 6.34 86.36 0.55 2.05 16 7 C -0.13 -1.76 6.08 30.67 0.19 -1.57 16 8 C -0.09 -2.06 4.46 30.62 0.14 -1.92 16 9 C -0.11 -3.18 2.67 -11.47 -0.03 -3.21 16 10 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 11 C 0.52 18.08 7.16 87.66 0.63 18.70 16 12 O -0.57 -21.90 15.60 -3.06 -0.05 -21.95 16 13 N -0.70 -25.49 5.03 -440.02 -2.21 -27.70 16 14 C 0.12 4.05 4.30 45.52 0.20 4.25 16 15 H 0.10 3.18 7.50 -2.39 -0.02 3.16 16 16 C -0.18 -6.32 7.70 31.21 0.24 -6.08 16 17 C 0.15 5.71 4.57 45.61 0.21 5.91 16 18 H 0.07 2.62 8.10 -2.38 -0.02 2.60 16 19 N -0.71 -35.74 5.18 -320.03 -1.66 -37.40 16 20 C -0.25 -14.26 9.97 84.03 0.84 -13.42 16 21 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 22 C -0.06 -3.71 5.50 84.86 0.47 -3.24 16 23 N -0.94 -58.71 13.06 21.65 0.28 -58.43 16 24 Si 0.96 48.09 29.55 68.60 2.03 50.12 16 25 H -0.29 -14.80 7.11 99.48 0.71 -14.09 16 26 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16 27 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 28 C -0.15 -4.54 7.58 31.12 0.24 -4.31 16 29 C 0.13 4.39 5.57 86.35 0.48 4.87 16 30 H 0.04 1.07 8.10 -2.39 -0.02 1.05 16 31 H 0.03 0.97 8.10 -2.39 -0.02 0.95 16 32 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.12 1.55 7.94 -2.39 -0.02 1.53 16 34 H 0.13 1.49 7.69 -2.39 -0.02 1.47 16 35 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.12 1.02 5.93 -2.38 -0.01 1.01 16 37 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.07 1.63 8.07 -2.39 -0.02 1.61 16 40 H 0.06 1.50 8.13 -2.39 -0.02 1.48 16 41 H 0.40 16.13 5.72 -92.71 -0.53 15.60 16 42 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 43 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.37 19.46 5.35 -92.71 -0.50 18.96 16 45 H 0.25 15.73 8.31 -92.71 -0.77 14.96 16 46 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 47 H 0.13 3.04 8.14 -2.39 -0.02 3.02 16 48 H 0.07 2.94 6.61 -2.39 -0.02 2.92 16 49 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 Total: -1.00 -78.99 386.47 1.45 -77.54 By element: Atomic # 1 Polarization: 49.79 SS G_CDS: -0.08 Total: 49.71 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: 5.61 Total: 13.27 kcal Atomic # 7 Polarization: -136.44 SS G_CDS: -6.02 Total: -142.47 kcal Atomic # 8 Polarization: -48.08 SS G_CDS: -0.09 Total: -48.17 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.03 Total: 50.12 kcal Total: -78.99 1.45 -77.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022131603.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.002 kcal (2) G-P(sol) polarization free energy of solvation -78.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.19 seconds