Wall clock time and date at job start Fri Apr 10 2020 18:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46944 * 2 1 4 4 C 1.53004 * 109.46909 * 119.99853 * 2 1 3 5 5 N 1.46492 * 109.47035 * 174.99898 * 4 2 1 6 6 C 1.46761 * 124.35001 * 89.99961 * 5 4 2 7 7 C 1.54486 * 105.47623 * 163.00283 * 6 5 4 8 8 H 1.08996 * 110.96886 * 267.26585 * 7 6 5 9 9 C 1.50700 * 110.96946 * 143.53565 * 7 6 5 10 10 O 1.21283 * 119.99803 * 0.02562 * 9 7 6 11 11 N 1.34777 * 119.99675 * 180.28108 * 9 7 6 12 12 C 1.46497 * 119.99525 * 179.72583 * 11 9 7 13 13 H 1.09007 * 112.85337 * 23.80486 * 12 11 9 14 14 C 1.53787 * 113.61173 * 154.99569 * 12 11 9 15 15 C 1.53788 * 87.07866 * 139.98114 * 14 12 11 16 16 H 1.08999 * 113.61579 * 89.20449 * 15 14 12 17 17 N 1.46505 * 113.61201 * 220.02042 * 15 14 12 18 18 C 1.36933 * 119.99759 * 205.00054 * 17 15 14 19 19 H 1.08004 * 120.00209 * 359.97438 * 18 17 15 20 20 C 1.38813 * 120.00230 * 179.97438 * 18 17 15 21 21 N 1.31618 * 119.99396 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00435 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47359 * 59.99937 * 22 20 18 24 24 H 1.48503 * 109.47376 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47200 * 300.00126 * 22 20 18 26 26 C 1.53777 * 113.61648 * 252.49385 * 12 11 9 27 27 C 1.54631 * 101.76063 * 25.42069 * 7 6 5 28 28 C 1.34422 * 124.35252 * 270.02545 * 5 4 2 29 29 O 1.21286 * 124.93789 * 0.38811 * 28 5 4 30 30 H 1.09002 * 109.47200 * 300.00002 * 1 2 3 31 31 H 1.09002 * 109.47115 * 59.99990 * 1 2 3 32 32 H 1.09001 * 109.47078 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47200 * 239.99998 * 2 1 3 34 34 H 1.09000 * 109.47517 * 299.99491 * 3 2 1 35 35 H 1.08998 * 109.47504 * 60.00370 * 3 2 1 36 36 H 1.09002 * 109.46946 * 179.97438 * 3 2 1 37 37 H 1.08998 * 109.46668 * 55.00260 * 4 2 1 38 38 H 1.08999 * 109.47035 * 295.00499 * 4 2 1 39 39 H 1.09006 * 110.24554 * 44.00859 * 6 5 4 40 40 H 1.08996 * 110.32040 * 282.04534 * 6 5 4 41 41 H 0.97000 * 119.99894 * 359.71837 * 11 9 7 42 42 H 1.08997 * 113.61747 * 254.52534 * 14 12 11 43 43 H 1.08999 * 113.61375 * 25.43231 * 14 12 11 44 44 H 0.96992 * 120.00177 * 24.99952 * 17 15 14 45 45 H 0.97004 * 120.00012 * 180.02562 * 21 20 18 46 46 H 1.09004 * 113.61536 * 334.56998 * 26 12 11 47 47 H 1.08994 * 113.61762 * 105.46938 * 26 12 11 48 48 H 1.08995 * 110.48893 * 93.88132 * 27 7 6 49 49 H 1.08999 * 110.48560 * 216.52124 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.4999 -0.8264 1.1907 6 6 4.4248 0.1771 1.7305 7 6 5.7906 -0.5368 1.8382 8 1 5.9257 -0.9730 2.8279 9 6 6.9193 0.4059 1.5086 10 8 6.6805 1.5568 1.2100 11 7 8.1937 -0.0316 1.5408 12 6 9.2905 0.8831 1.2145 13 1 9.0281 1.9301 1.3670 14 6 10.6335 0.4860 1.8498 15 6 11.2931 0.8976 0.5230 16 1 11.5803 1.9484 0.4856 17 7 12.3692 -0.0016 0.0989 18 6 13.3622 0.4592 -0.7238 19 1 13.3518 1.4854 -1.0603 20 6 14.3821 -0.3925 -1.1252 21 7 14.3944 -1.6432 -0.7155 22 14 15.7362 0.2359 -2.2480 23 1 16.4467 1.3592 -1.5860 24 1 16.6972 -0.8614 -2.5267 25 1 15.1415 0.7096 -3.5236 26 6 9.9422 0.6018 -0.1496 27 6 5.6566 -1.6378 0.7608 28 6 4.1647 -1.8542 0.6350 29 8 3.6440 -2.8152 0.1093 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1300 1.4425 0.0005 37 1 1.6053 -1.7198 1.2951 38 1 1.7515 -0.1583 2.1370 39 1 4.0922 0.5055 2.7153 40 1 4.4966 1.0286 1.0538 41 1 8.3846 -0.9521 1.7800 42 1 10.9203 1.1140 2.6932 43 1 10.7160 -0.5791 2.0665 44 1 12.3784 -0.9233 0.4008 45 1 15.1073 -2.2384 -0.9957 46 1 9.8357 -0.4316 -0.4796 47 1 9.6709 1.3232 -0.9202 48 1 6.0739 -1.2971 -0.1867 49 1 6.1487 -2.5536 1.0880 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022163725.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:45 Heat of formation + Delta-G solvation = -48.858371 kcal Electronic energy + Delta-G solvation = -27324.856758 eV Core-core repulsion = 23480.343601 eV Total energy + Delta-G solvation = -3844.513157 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 4.94 seconds Orbital eigenvalues (eV) -41.16993 -39.71108 -38.09373 -37.01831 -35.82057 -34.19901 -32.95389 -31.99034 -29.89155 -28.18206 -27.45316 -26.81886 -25.18782 -24.76147 -23.51494 -21.80202 -21.01944 -20.37492 -19.58102 -19.28657 -17.79438 -17.18288 -17.05676 -16.29569 -16.24311 -15.60598 -15.11616 -14.96262 -14.68247 -14.53133 -14.47438 -13.92286 -13.83700 -13.49263 -13.19319 -13.10636 -13.06155 -12.91763 -12.62322 -12.23870 -12.10745 -11.97817 -11.87837 -11.78210 -11.62127 -11.30484 -11.17705 -11.06311 -10.95076 -10.70975 -10.55630 -10.40414 -10.22428 -10.08854 -9.80668 -9.62829 -8.99540 -8.95745 -8.85197 -7.02565 -5.83287 -3.12418 2.29153 2.43519 2.59871 3.10604 3.41241 3.46031 3.46715 3.90525 4.01965 4.41671 4.43895 4.49794 4.55750 4.58084 4.70824 4.83323 4.98182 5.00799 5.10219 5.16575 5.18398 5.19907 5.28707 5.30584 5.37202 5.39103 5.43017 5.48682 5.51708 5.63699 5.75249 5.81115 5.87867 5.89334 6.00106 6.05357 6.19546 6.22818 6.24825 6.40567 6.55394 6.66854 6.77441 6.99262 7.47622 7.65265 7.87125 8.10658 8.35085 9.46489 10.02610 10.36997 11.38890 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.023606 B = 0.002081 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.878307 B =13450.702465 C =13645.775894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C -0.151 4.151 4 C 0.132 3.868 5 N -0.617 5.617 6 C 0.114 3.886 7 C -0.126 4.126 8 H 0.117 0.883 9 C 0.524 3.476 10 O -0.539 6.539 11 N -0.708 5.708 12 C 0.117 3.883 13 H 0.110 0.890 14 C -0.159 4.159 15 C 0.169 3.831 16 H 0.080 0.920 17 N -0.710 5.710 18 C -0.246 4.246 19 H 0.072 0.928 20 C -0.012 4.012 21 N -0.933 5.933 22 Si 0.909 3.091 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.285 1.285 26 C -0.176 4.176 27 C -0.145 4.145 28 C 0.521 3.479 29 O -0.529 6.529 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.401 0.599 42 H 0.067 0.933 43 H 0.082 0.918 44 H 0.385 0.615 45 H 0.257 0.743 46 H 0.080 0.920 47 H 0.059 0.941 48 H 0.111 0.889 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.536 2.993 8.607 27.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.136 4.136 3 C -0.208 4.208 4 C 0.010 3.990 5 N -0.351 5.351 6 C -0.009 4.009 7 C -0.148 4.148 8 H 0.135 0.865 9 C 0.309 3.691 10 O -0.416 6.416 11 N -0.357 5.357 12 C 0.012 3.988 13 H 0.128 0.872 14 C -0.199 4.199 15 C 0.056 3.944 16 H 0.098 0.902 17 N -0.347 5.347 18 C -0.377 4.377 19 H 0.090 0.910 20 C -0.208 4.208 21 N -0.580 5.580 22 Si 0.739 3.261 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.219 4.219 27 C -0.186 4.186 28 C 0.308 3.692 29 O -0.406 6.406 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.114 0.886 41 H 0.236 0.764 42 H 0.085 0.915 43 H 0.101 0.899 44 H 0.219 0.781 45 H 0.066 0.934 46 H 0.099 0.901 47 H 0.078 0.922 48 H 0.129 0.871 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -25.877 3.399 8.009 27.301 hybrid contribution 0.886 -0.471 -0.394 1.078 sum -24.991 2.928 7.615 26.289 Atomic orbital electron populations 1.21767 0.94413 1.01963 1.02076 1.21558 0.96085 0.97011 0.98920 1.21950 1.01772 0.95295 1.01813 1.21500 0.77838 1.01628 0.98047 1.48287 1.06321 1.21800 1.58662 1.22109 0.86334 0.91605 1.00829 1.22271 0.94475 0.96432 1.01631 0.86486 1.20019 0.83802 0.88123 0.77179 1.90708 1.83938 1.18846 1.48157 1.46036 1.05646 1.14916 1.69110 1.22551 0.83986 0.94475 0.97785 0.87186 1.23873 0.94342 1.01892 0.99754 1.21346 0.86875 0.95243 0.90946 0.90222 1.42341 1.25076 1.10486 1.56845 1.19262 1.01265 0.95849 1.21354 0.91037 1.24771 0.99199 0.95855 1.01008 1.69644 1.34746 1.04587 1.49051 0.86247 0.81712 0.77474 0.80622 1.21195 1.21677 1.21187 1.24342 0.99711 1.02006 0.95804 1.22355 0.95077 1.00219 1.00924 1.20756 0.89493 0.81755 0.77157 1.90741 1.74278 1.31285 1.44255 0.92506 0.92296 0.92482 0.90773 0.92624 0.92637 0.91998 0.89928 0.90223 0.89826 0.88569 0.76416 0.91460 0.89916 0.78081 0.93371 0.90139 0.92225 0.87074 0.86974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.19 37.16 0.34 -0.52 16 2 C -0.12 -0.88 3.13 -90.62 -0.28 -1.16 16 3 C -0.15 -1.11 8.87 37.16 0.33 -0.78 16 4 C 0.13 0.98 5.35 -4.04 -0.02 0.96 16 5 N -0.62 -5.41 2.71 -172.41 -0.47 -5.87 16 6 C 0.11 0.89 6.04 -3.12 -0.02 0.87 16 7 C -0.13 -0.96 3.54 -90.13 -0.32 -1.28 16 8 H 0.12 0.62 8.14 -51.93 -0.42 0.20 16 9 C 0.52 5.69 7.06 -10.98 -0.08 5.62 16 10 O -0.54 -7.78 15.10 5.55 0.08 -7.69 16 11 N -0.71 -7.57 5.35 -53.01 -0.28 -7.85 16 12 C 0.12 1.56 4.24 -67.12 -0.28 1.28 16 13 H 0.11 1.55 7.46 -51.93 -0.39 1.16 16 14 C -0.16 -2.29 7.58 -25.91 -0.20 -2.49 16 15 C 0.17 3.12 4.48 -67.11 -0.30 2.82 16 16 H 0.08 1.48 8.10 -51.93 -0.42 1.06 16 17 N -0.71 -16.96 5.40 -52.63 -0.28 -17.25 16 18 C -0.25 -6.65 9.97 -15.06 -0.15 -6.80 16 19 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 21 N -0.93 -27.47 13.06 55.49 0.72 -26.74 16 22 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 C -0.18 -2.88 7.68 -25.92 -0.20 -3.08 16 27 C -0.15 -1.24 6.41 -26.74 -0.17 -1.41 16 28 C 0.52 5.74 8.02 -10.86 -0.09 5.65 16 29 O -0.53 -7.87 17.60 5.55 0.10 -7.77 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.53 5.44 -51.93 -0.28 0.25 16 37 H 0.08 0.68 7.93 -51.93 -0.41 0.26 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.10 0.90 5.00 -51.93 -0.26 0.64 16 41 H 0.40 3.42 8.73 -40.82 -0.36 3.06 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.08 1.18 8.09 -51.93 -0.42 0.76 16 44 H 0.39 9.71 7.92 -40.82 -0.32 9.38 16 45 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 47 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 48 H 0.11 1.04 7.89 -51.93 -0.41 0.63 16 49 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 395.72 15.07 5.96 5.96 Total: -1.00 -33.23 395.72 -9.04 -42.27 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -8.31 Total: 8.73 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -1.53 Total: -0.76 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: -0.31 Total: -57.72 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: 0.18 Total: -15.46 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.23 -9.04 -42.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022163725.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.593 kcal (2) G-P(sol) polarization free energy of solvation -33.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.94 seconds