Wall clock time and date at job start Fri Apr 10 2020 18:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47157 * 2 1 4 4 N 1.46494 * 109.47425 * 120.00312 * 2 1 3 5 5 C 1.46758 * 124.35403 * 119.99864 * 4 2 1 6 6 C 1.54478 * 105.47671 * 163.00656 * 5 4 2 7 7 H 1.08993 * 110.97312 * 143.57240 * 6 5 4 8 8 C 1.50704 * 110.96618 * 267.29987 * 6 5 4 9 9 O 1.21273 * 120.00505 * 359.97438 * 8 6 5 10 10 N 1.34782 * 119.99884 * 179.97438 * 8 6 5 11 11 C 1.46496 * 120.00247 * 179.97438 * 10 8 6 12 12 C 1.52993 * 109.47177 * 185.05586 * 11 10 8 13 13 H 1.09003 * 109.87539 * 305.47428 * 12 11 10 14 14 C 1.54330 * 109.88355 * 66.64982 * 12 11 10 15 15 C 1.55161 * 102.94123 * 141.60924 * 14 12 11 16 16 C 1.54910 * 101.58340 * 324.49787 * 15 14 12 17 17 N 1.47028 * 109.88299 * 184.45766 * 12 11 10 18 18 C 1.36930 * 125.64992 * 61.67569 * 17 12 11 19 19 H 1.08004 * 119.99682 * 13.77025 * 18 17 12 20 20 C 1.38811 * 120.00292 * 193.76875 * 18 17 12 21 21 N 1.31615 * 119.99735 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00040 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47038 * 60.00246 * 22 20 18 24 24 H 1.48503 * 109.46937 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47245 * 300.00120 * 22 20 18 26 26 C 1.54625 * 101.76384 * 25.41603 * 6 5 4 27 27 C 1.34424 * 124.34545 * 300.02066 * 4 2 1 28 28 O 1.21279 * 124.94245 * 0.39000 * 27 4 2 29 29 H 1.08995 * 109.46891 * 300.00229 * 1 2 3 30 30 H 1.09006 * 109.47024 * 59.99862 * 1 2 3 31 31 H 1.09001 * 109.46643 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46963 * 240.00525 * 2 1 3 33 33 H 1.08994 * 109.47560 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47268 * 300.00443 * 3 2 1 35 35 H 1.09002 * 109.46903 * 59.99641 * 3 2 1 36 36 H 1.09002 * 110.24597 * 44.00464 * 5 4 2 37 37 H 1.09002 * 110.24852 * 282.00926 * 5 4 2 38 38 H 0.96998 * 119.99657 * 359.97438 * 10 8 6 39 39 H 1.08998 * 109.47275 * 65.05208 * 11 10 8 40 40 H 1.09004 * 109.47073 * 305.05560 * 11 10 8 41 41 H 1.08996 * 110.71788 * 259.97139 * 14 12 11 42 42 H 1.08995 * 110.71952 * 23.24338 * 14 12 11 43 43 H 1.09000 * 110.99967 * 206.42172 * 15 14 12 44 44 H 1.09007 * 111.03615 * 82.58960 * 15 14 12 45 45 H 1.08996 * 110.36591 * 278.17236 * 16 15 14 46 46 H 1.08998 * 110.36579 * 155.84555 * 16 15 14 47 47 H 0.97005 * 119.99924 * 180.02562 * 21 20 18 48 48 H 1.08998 * 110.48672 * 93.88106 * 26 6 5 49 49 H 1.09006 * 110.48713 * 216.52392 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.8657 -1.8888 1.1726 6 6 3.4720 -1.9926 2.5896 7 1 3.5564 -3.0332 2.9026 8 6 4.8100 -1.3023 2.6555 9 8 5.2645 -0.7649 1.6679 10 7 5.5017 -1.2821 3.8122 11 6 6.8026 -0.6115 3.8762 12 6 7.4277 -0.8415 5.2535 13 1 6.7340 -0.5256 6.0327 14 6 7.7751 -2.3349 5.4295 15 6 9.1246 -2.2900 6.1939 16 6 9.7907 -1.0356 5.5755 17 7 8.6835 -0.0851 5.3653 18 6 8.8046 1.2766 5.2878 19 1 7.9263 1.9015 5.3556 20 6 10.0560 1.8539 5.1221 21 7 11.1262 1.0923 5.0391 22 14 10.2210 3.7115 5.0157 23 1 9.7047 4.3267 6.2648 24 1 11.6510 4.0723 4.8412 25 1 9.4387 4.2124 3.8572 26 6 2.4198 -1.2422 3.4386 27 6 1.7478 -0.3085 2.4561 28 8 1.0642 0.6457 2.7609 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 3.6567 -1.7769 0.4311 37 1 2.2648 -2.7715 0.9539 38 1 5.1380 -1.7115 4.6022 39 1 6.6688 0.4577 3.7118 40 1 7.4591 -1.0180 3.1068 41 1 7.0129 -2.8408 6.0221 42 1 7.8965 -2.8193 4.4607 43 1 9.7157 -3.1841 5.9958 44 1 8.9639 -2.1596 7.2642 45 1 10.2615 -1.2858 4.6249 46 1 10.5243 -0.6170 6.2646 47 1 12.0008 1.4957 4.9237 48 1 1.6961 -1.9426 3.8555 49 1 2.9047 -0.6751 4.2332 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027916235.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:32 Heat of formation + Delta-G solvation = -51.097493 kcal Electronic energy + Delta-G solvation = -28405.544254 eV Core-core repulsion = 24560.934001 eV Total energy + Delta-G solvation = -3844.610253 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.08232 -39.21282 -37.68075 -36.40221 -35.06791 -34.34173 -32.51287 -30.68898 -29.60192 -28.59779 -27.87346 -27.32365 -25.11535 -24.26780 -22.71735 -22.60560 -20.42176 -20.06073 -19.46385 -19.03575 -17.72788 -16.92014 -16.65405 -16.00052 -15.68328 -15.42863 -14.97728 -14.77447 -14.32335 -14.28645 -13.90680 -13.83305 -13.77685 -13.45800 -13.33513 -12.91647 -12.63273 -12.29499 -12.15517 -12.05192 -11.92823 -11.88013 -11.77892 -11.70219 -11.42904 -11.35177 -11.26701 -10.96731 -10.78875 -10.28943 -10.14876 -9.99533 -9.88050 -9.75762 -9.73123 -9.62108 -8.85349 -8.74014 -8.60059 -6.87456 -5.78576 -3.15393 2.46888 2.68405 2.81892 3.27038 3.40665 3.44747 3.46237 4.04723 4.12945 4.45331 4.52972 4.67418 4.79106 4.87391 5.02008 5.06670 5.19540 5.29652 5.32260 5.36622 5.42868 5.46391 5.47994 5.52821 5.58511 5.59833 5.62905 5.76803 5.77331 5.99212 6.01357 6.09169 6.17805 6.19981 6.41869 6.49169 6.50273 6.57468 6.65410 6.76546 7.00777 7.01213 7.49336 7.57488 7.68545 7.76948 8.06960 8.23109 8.36936 9.15274 9.75816 10.42347 11.33027 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.015028 B = 0.003122 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.763296 B = 8965.895750 C =10130.787431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.155 3.845 3 C -0.169 4.169 4 N -0.610 5.610 5 C 0.117 3.883 6 C -0.126 4.126 7 H 0.123 0.877 8 C 0.513 3.487 9 O -0.534 6.534 10 N -0.719 5.719 11 C 0.109 3.891 12 C 0.152 3.848 13 H 0.037 0.963 14 C -0.125 4.125 15 C -0.149 4.149 16 C 0.172 3.828 17 N -0.588 5.588 18 C -0.235 4.235 19 H 0.075 0.925 20 C 0.000 4.000 21 N -0.916 5.916 22 Si 0.911 3.089 23 H -0.284 1.284 24 H -0.289 1.289 25 H -0.283 1.283 26 C -0.147 4.147 27 C 0.520 3.480 28 O -0.529 6.529 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.396 0.604 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.025 0.975 46 H 0.074 0.926 47 H 0.254 0.746 48 H 0.114 0.886 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.012 -11.607 -5.675 22.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.053 3.947 3 C -0.227 4.227 4 N -0.344 5.344 5 C -0.007 4.007 6 C -0.148 4.148 7 H 0.141 0.859 8 C 0.297 3.703 9 O -0.410 6.410 10 N -0.370 5.370 11 C -0.016 4.016 12 C 0.043 3.957 13 H 0.055 0.945 14 C -0.163 4.163 15 C -0.188 4.188 16 C 0.047 3.953 17 N -0.313 5.313 18 C -0.364 4.364 19 H 0.093 0.907 20 C -0.198 4.198 21 N -0.562 5.562 22 Si 0.740 3.260 23 H -0.210 1.210 24 H -0.215 1.215 25 H -0.209 1.209 26 C -0.188 4.188 27 C 0.307 3.693 28 O -0.406 6.406 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.115 0.885 37 H 0.096 0.904 38 H 0.230 0.770 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.043 0.957 46 H 0.092 0.908 47 H 0.065 0.935 48 H 0.132 0.868 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -17.816 -10.482 -6.319 21.615 hybrid contribution 0.099 0.683 0.188 0.716 sum -17.716 -9.799 -6.131 21.154 Atomic orbital electron populations 1.22186 0.94816 1.02115 1.03299 1.20914 0.94079 0.93384 0.86336 1.22183 1.02073 0.95506 1.02970 1.48345 1.51010 1.28918 1.06154 1.22001 0.94207 0.87461 0.97014 1.22345 0.93303 1.02019 0.97158 0.85876 1.20149 0.85830 0.80612 0.83706 1.90722 1.69836 1.45187 1.35269 1.46100 1.21808 1.57131 1.11912 1.22274 0.81375 0.97423 1.00552 1.21131 0.90479 0.91259 0.92803 0.94514 1.22602 0.97835 0.95924 0.99955 1.23013 0.96380 1.00083 0.99300 1.21474 0.90213 0.85606 0.98017 1.44478 1.00921 1.02118 1.83760 1.18938 0.93417 0.80268 1.43749 0.90700 1.24894 0.95768 0.98120 1.00988 1.69924 0.97813 1.33374 1.55078 0.86228 0.76781 0.84837 0.78113 1.21020 1.21517 1.20943 1.22381 0.98457 0.99440 0.98475 1.20709 0.80119 0.84659 0.83780 1.90697 1.39735 1.28669 1.81476 0.91007 0.91522 0.92643 0.89457 0.91873 0.91651 0.91150 0.88509 0.90425 0.77048 0.91496 0.91572 0.92389 0.91847 0.92346 0.92289 0.95690 0.90785 0.93528 0.86794 0.87488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 9.20 37.16 0.34 -1.16 16 2 C 0.15 1.57 3.47 -67.93 -0.24 1.34 16 3 C -0.17 -1.98 9.20 37.16 0.34 -1.64 16 4 N -0.61 -6.72 2.83 -164.85 -0.47 -7.18 16 5 C 0.12 1.03 6.63 -3.13 -0.02 1.01 16 6 C -0.13 -1.10 3.54 -90.14 -0.32 -1.42 16 7 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 8 C 0.51 7.02 7.08 -10.98 -0.08 6.94 16 9 O -0.53 -9.74 15.53 5.56 0.09 -9.65 16 10 N -0.72 -9.70 5.28 -60.30 -0.32 -10.02 16 11 C 0.11 2.01 5.10 -4.05 -0.02 1.99 16 12 C 0.15 2.88 3.19 -66.95 -0.21 2.66 16 13 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 14 C -0.13 -1.96 6.20 -24.89 -0.15 -2.12 16 15 C -0.15 -2.64 7.08 -24.58 -0.17 -2.81 16 16 C 0.17 4.02 5.42 -2.53 -0.01 4.00 16 17 N -0.59 -14.36 3.13 -162.57 -0.51 -14.86 16 18 C -0.24 -6.41 9.73 -15.06 -0.15 -6.56 16 19 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 20 C 0.00 -0.01 5.47 -17.43 -0.10 -0.11 16 21 N -0.92 -26.50 10.54 55.49 0.59 -25.91 16 22 Si 0.91 22.16 29.55 -169.99 -5.02 17.13 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 26 C -0.15 -1.33 6.40 -26.74 -0.17 -1.50 16 27 C 0.52 6.64 7.41 -10.86 -0.08 6.56 16 28 O -0.53 -8.60 15.12 5.56 0.08 -8.51 16 29 H 0.07 0.82 6.77 -51.93 -0.35 0.47 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.73 8.07 -51.93 -0.42 0.31 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.98 6.80 -51.93 -0.35 0.63 16 36 H 0.10 1.00 7.02 -51.93 -0.36 0.64 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.40 4.03 8.40 -40.82 -0.34 3.69 16 39 H 0.07 1.45 7.86 -51.93 -0.41 1.04 16 40 H 0.07 1.37 8.03 -51.93 -0.42 0.95 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.98 7.78 -51.93 -0.40 0.58 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 45 H 0.03 0.64 8.08 -51.93 -0.42 0.22 16 46 H 0.07 1.94 6.87 -51.93 -0.36 1.58 16 47 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 48 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 49 H 0.11 1.04 7.84 -51.93 -0.41 0.63 16 LS Contribution 387.65 15.07 5.84 5.84 Total: -1.00 -34.30 387.65 -9.20 -43.50 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -8.44 Total: 2.49 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: -1.04 Total: 7.19 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: -0.71 Total: -57.98 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: 0.17 Total: -18.16 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.30 -9.20 -43.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027916235.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.599 kcal (2) G-P(sol) polarization free energy of solvation -34.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds