Wall clock time and date at job start Fri Apr 10 2020 18:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46750 * 2 1 4 4 N 1.46497 * 109.47208 * 119.99723 * 2 1 3 5 5 C 1.34564 * 124.43590 * 300.08108 * 4 2 1 6 6 O 1.21280 * 124.91348 * 359.54134 * 5 4 2 7 7 C 1.51280 * 110.13802 * 179.64505 * 5 4 2 8 8 C 1.54627 * 104.19753 * 343.67043 * 7 5 4 9 9 C 1.46765 * 124.34520 * 120.00373 * 4 2 1 10 10 H 1.09001 * 110.24777 * 77.93209 * 9 4 2 11 11 C 1.50691 * 110.24807 * 316.01747 * 9 4 2 12 12 O 1.21278 * 120.00190 * 1.23129 * 11 9 4 13 13 N 1.34775 * 120.00270 * 181.23261 * 11 9 4 14 14 C 1.46504 * 120.00207 * 180.02562 * 13 11 9 15 15 C 1.53003 * 109.46983 * 179.97438 * 14 13 11 16 16 C 1.53786 * 113.61503 * 85.86203 * 15 14 13 17 17 C 1.54049 * 86.98426 * 140.01654 * 16 15 14 18 18 N 1.46504 * 113.68747 * 89.12986 * 17 16 15 19 19 C 1.36934 * 119.99954 * 107.47077 * 18 17 16 20 20 H 1.07997 * 120.00337 * 359.97438 * 19 18 17 21 21 C 1.38815 * 119.99789 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99888 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00012 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46788 * 89.99902 * 23 21 19 25 25 H 1.48494 * 109.47011 * 209.99863 * 23 21 19 26 26 H 1.48501 * 109.46962 * 330.00022 * 23 21 19 27 27 C 1.53781 * 113.61337 * 183.46996 * 15 14 13 28 28 H 1.08995 * 109.47400 * 299.99979 * 1 2 3 29 29 H 1.08998 * 109.47528 * 60.00320 * 1 2 3 30 30 H 1.09002 * 109.46637 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47261 * 240.00307 * 2 1 3 32 32 H 1.09004 * 109.47082 * 180.02562 * 3 2 1 33 33 H 1.09009 * 109.47420 * 299.99655 * 3 2 1 34 34 H 1.08995 * 109.47152 * 59.99869 * 3 2 1 35 35 H 1.08999 * 110.48056 * 224.99523 * 7 5 4 36 36 H 1.08995 * 110.48937 * 102.35926 * 7 5 4 37 37 H 1.09005 * 110.97404 * 266.68395 * 8 7 5 38 38 H 1.09000 * 110.96535 * 142.91907 * 8 7 5 39 39 H 0.96999 * 120.00146 * 359.97438 * 13 11 9 40 40 H 1.09000 * 109.47232 * 59.99775 * 14 13 11 41 41 H 1.08997 * 109.47041 * 299.99591 * 14 13 11 42 42 H 1.09002 * 112.85017 * 314.66585 * 15 14 13 43 43 H 1.08992 * 113.61675 * 254.61398 * 16 15 14 44 44 H 1.09000 * 113.60973 * 25.51686 * 16 15 14 45 45 H 1.09005 * 113.62125 * 220.02158 * 17 16 15 46 46 H 0.97002 * 119.99803 * 287.47074 * 18 17 16 47 47 H 0.97002 * 119.99454 * 180.02562 * 22 21 19 48 48 H 1.08999 * 113.61567 * 334.48261 * 27 15 14 49 49 H 1.09000 * 113.61379 * 105.30384 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.7475 -0.3102 2.4582 6 8 1.0752 0.6517 2.7642 7 6 2.4056 -1.2550 3.4395 8 6 2.7631 -2.4962 2.5893 9 6 2.8657 -1.8887 1.1727 10 1 3.8980 -1.6164 0.9529 11 6 2.3557 -2.8680 0.1472 12 8 1.3864 -2.5906 -0.5269 13 7 2.9768 -4.0522 -0.0210 14 6 2.4814 -5.0041 -1.0184 15 6 3.3586 -6.2577 -1.0069 16 6 2.9301 -7.2998 0.0397 17 6 3.2378 -8.3729 -1.0219 18 7 4.6249 -8.8436 -0.9981 19 6 4.9155 -10.0942 -0.5220 20 1 4.1221 -10.7334 -0.1636 21 6 6.2299 -10.5400 -0.4989 22 7 7.1968 -9.7608 -0.9352 23 14 6.6264 -12.2458 0.1512 24 1 6.5752 -13.2248 -0.9642 25 1 7.9866 -12.2446 0.7468 26 1 5.6324 -12.6238 1.1877 27 6 2.9731 -7.2891 -2.0803 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8901 34 1 1.6765 1.9563 0.8899 35 1 1.7101 -1.5246 4.2343 36 1 3.3068 -0.8055 3.8562 37 1 1.9707 -3.2432 2.6370 38 1 3.7170 -2.9211 2.9016 39 1 3.7523 -4.2740 0.5178 40 1 2.5162 -4.5458 -2.0068 41 1 1.4534 -5.2774 -0.7806 42 1 4.4240 -6.0286 -0.9841 43 1 3.5870 -7.3419 0.9084 44 1 1.8752 -7.2409 0.3079 45 1 2.5144 -9.1881 -1.0413 46 1 5.3375 -8.2693 -1.3195 47 1 8.1152 -10.0725 -0.9194 48 1 1.9300 -7.2274 -2.3906 49 1 3.6641 -7.3217 -2.9227 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091201118.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:24 Heat of formation + Delta-G solvation = -41.400787 kcal Electronic energy + Delta-G solvation = -27771.985952 eV Core-core repulsion = 23927.796180 eV Total energy + Delta-G solvation = -3844.189772 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.30946 -39.50505 -38.50945 -36.44148 -35.43979 -34.63066 -33.26154 -30.39677 -30.33396 -29.06581 -27.27518 -26.83232 -25.13965 -23.82734 -23.04486 -22.62399 -21.79550 -20.79299 -19.11428 -18.48673 -17.72304 -17.41781 -17.11729 -16.09924 -15.94058 -15.46405 -15.23199 -14.94002 -14.44889 -14.36273 -14.07248 -14.06656 -13.83880 -13.68802 -13.40495 -13.18578 -12.94386 -12.84494 -12.43653 -12.23783 -12.18203 -12.07562 -12.00110 -11.52189 -11.46951 -11.39726 -11.18779 -11.10370 -10.90113 -10.56417 -10.29757 -10.21606 -9.96734 -9.77330 -9.75512 -9.56455 -9.14021 -8.95701 -8.91747 -7.06937 -5.87240 -3.16412 2.26683 2.37803 2.56218 3.06817 3.37363 3.43080 3.44307 3.91219 4.01127 4.32065 4.50074 4.52259 4.67246 4.81430 4.88778 4.96010 4.98564 5.10169 5.14344 5.16709 5.27085 5.38115 5.38622 5.47684 5.50858 5.52702 5.55914 5.61358 5.65584 5.77576 5.82410 5.85947 5.98458 6.01780 6.13243 6.18364 6.29276 6.31124 6.42315 6.50910 6.65898 6.81211 6.87676 6.96050 7.31999 7.63142 7.91135 8.01635 8.31995 9.42846 9.99782 10.33896 11.35123 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.023534 B = 0.002243 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.477080 B =12478.230395 C =13059.297736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.160 3.840 3 C -0.169 4.169 4 N -0.594 5.594 5 C 0.520 3.480 6 O -0.527 6.527 7 C -0.155 4.155 8 C -0.124 4.124 9 C 0.110 3.890 10 H 0.107 0.893 11 C 0.503 3.497 12 O -0.529 6.529 13 N -0.717 5.717 14 C 0.132 3.868 15 C -0.120 4.120 16 C -0.168 4.168 17 C 0.167 3.833 18 N -0.705 5.705 19 C -0.243 4.243 20 H 0.072 0.928 21 C -0.012 4.012 22 N -0.933 5.933 23 Si 0.908 3.092 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C -0.148 4.148 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.404 0.596 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.093 0.907 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.385 0.615 47 H 0.256 0.744 48 H 0.076 0.924 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.406 18.499 4.389 20.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.058 3.942 3 C -0.227 4.227 4 N -0.328 5.328 5 C 0.308 3.692 6 O -0.403 6.403 7 C -0.195 4.195 8 C -0.162 4.162 9 C 0.002 3.998 10 H 0.125 0.875 11 C 0.288 3.712 12 O -0.406 6.406 13 N -0.369 5.369 14 C 0.009 3.991 15 C -0.138 4.138 16 C -0.209 4.209 17 C 0.055 3.945 18 N -0.344 5.344 19 C -0.374 4.374 20 H 0.090 0.910 21 C -0.208 4.208 22 N -0.581 5.581 23 Si 0.739 3.261 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.188 4.188 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.113 0.887 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.108 0.892 38 H 0.121 0.879 39 H 0.238 0.762 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.112 0.888 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.219 0.781 47 H 0.066 0.934 48 H 0.095 0.905 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.469 19.049 4.038 21.653 hybrid contribution 1.048 -0.906 0.393 1.440 sum -8.421 18.143 4.431 20.487 Atomic orbital electron populations 1.22073 0.94508 1.03000 1.02075 1.20950 0.94975 0.91713 0.86516 1.22240 1.00987 0.96337 1.03138 1.48222 1.50645 1.27229 1.06752 1.20850 0.79721 0.85121 0.83530 1.90699 1.39417 1.29000 1.81217 1.22381 1.03157 0.95419 0.98559 1.22652 1.04780 0.97681 0.91075 1.21642 0.95987 0.85981 0.96175 0.87507 1.20607 0.83873 0.82655 0.84109 1.90713 1.26371 1.76528 1.46942 1.46037 1.33261 1.16963 1.40642 1.21503 0.97994 0.88485 0.91131 1.22718 0.99496 0.91990 0.99641 1.23926 0.99769 0.98567 0.98676 1.21100 0.88555 0.92626 0.92218 1.42165 1.01216 1.16302 1.74697 1.19286 0.92291 0.91639 1.34199 0.90986 1.24766 0.95719 0.98500 1.01849 1.69660 0.99526 1.36360 1.52514 0.86172 0.77398 0.84035 0.78473 1.21633 1.21735 1.20688 1.23442 1.00874 0.96836 0.97617 0.91942 0.92069 0.91452 0.88715 0.92773 0.91499 0.91214 0.87672 0.87417 0.89250 0.87879 0.76190 0.91773 0.91504 0.88846 0.91466 0.91439 0.91982 0.78122 0.93409 0.90494 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.03 37.16 0.34 -1.49 16 2 C 0.16 1.71 2.38 -67.93 -0.16 1.55 16 3 C -0.17 -1.61 9.20 37.16 0.34 -1.26 16 4 N -0.59 -6.03 2.59 -158.63 -0.41 -6.44 16 5 C 0.52 5.67 7.42 -10.80 -0.08 5.59 16 6 O -0.53 -7.55 15.14 5.56 0.08 -7.47 16 7 C -0.16 -1.05 6.86 -26.74 -0.18 -1.24 16 8 C -0.12 -0.72 6.64 -25.10 -0.17 -0.89 16 9 C 0.11 0.87 3.70 -68.16 -0.25 0.62 16 10 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 11 C 0.50 5.23 6.85 -10.99 -0.08 5.16 16 12 O -0.53 -7.28 12.91 5.56 0.07 -7.21 16 13 N -0.72 -6.86 5.51 -60.29 -0.33 -7.19 16 14 C 0.13 1.51 5.50 -4.04 -0.02 1.49 16 15 C -0.12 -1.58 3.63 -89.80 -0.33 -1.90 16 16 C -0.17 -2.52 7.45 -25.77 -0.19 -2.72 16 17 C 0.17 3.06 4.57 -66.97 -0.31 2.75 16 18 N -0.71 -16.54 5.31 -52.50 -0.28 -16.81 16 19 C -0.24 -6.44 9.97 -15.06 -0.15 -6.59 16 20 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 22 N -0.93 -26.97 13.06 55.49 0.72 -26.25 16 23 Si 0.91 21.56 29.55 -169.99 -5.02 16.54 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 27 C -0.15 -2.19 7.39 -25.92 -0.19 -2.38 16 28 H 0.06 0.79 6.80 -51.93 -0.35 0.44 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.88 7.07 -51.93 -0.37 0.51 16 31 H 0.09 1.07 6.53 -51.93 -0.34 0.73 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 34 H 0.07 0.78 6.79 -51.93 -0.35 0.43 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.60 7.91 -51.93 -0.41 0.19 16 38 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.40 3.11 8.47 -40.82 -0.35 2.77 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.82 7.88 -51.93 -0.41 0.41 16 42 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.07 0.91 7.92 -51.93 -0.41 0.50 16 45 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 46 H 0.38 9.54 7.90 -40.82 -0.32 9.21 16 47 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 48 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 49 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 390.62 15.07 5.89 5.89 Total: -1.00 -32.44 390.62 -9.15 -41.59 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -8.35 Total: 9.10 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -1.52 Total: -1.74 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: -0.30 Total: -56.69 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: 0.16 Total: -14.67 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.44 -9.15 -41.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091201118.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.187 kcal (2) G-P(sol) polarization free energy of solvation -32.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds