Wall clock time and date at job start Fri Apr 10 2020 18:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46750 * 2 1 4 4 N 1.46497 * 109.47208 * 119.99723 * 2 1 3 5 5 C 1.34564 * 124.43590 * 300.08108 * 4 2 1 6 6 O 1.21280 * 124.91348 * 359.54134 * 5 4 2 7 7 C 1.51280 * 110.13802 * 179.64505 * 5 4 2 8 8 C 1.54627 * 104.19753 * 343.67043 * 7 5 4 9 9 C 1.46765 * 124.34520 * 120.00373 * 4 2 1 10 10 H 1.09001 * 110.24777 * 77.93209 * 9 4 2 11 11 C 1.50691 * 110.24807 * 316.01747 * 9 4 2 12 12 O 1.21278 * 120.00190 * 1.23129 * 11 9 4 13 13 N 1.34775 * 120.00270 * 181.23261 * 11 9 4 14 14 C 1.46504 * 120.00207 * 180.02562 * 13 11 9 15 15 C 1.53003 * 109.46983 * 179.97438 * 14 13 11 16 16 C 1.53786 * 113.61503 * 85.86203 * 15 14 13 17 17 C 1.54049 * 86.98426 * 140.01654 * 16 15 14 18 18 N 1.46504 * 113.68747 * 89.12986 * 17 16 15 19 19 C 1.36934 * 119.99954 * 107.47077 * 18 17 16 20 20 H 1.07997 * 120.00337 * 359.97438 * 19 18 17 21 21 C 1.38815 * 119.99789 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99888 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00012 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46788 * 89.99902 * 23 21 19 25 25 H 1.48494 * 109.47011 * 209.99863 * 23 21 19 26 26 H 1.48501 * 109.46962 * 330.00022 * 23 21 19 27 27 C 1.53781 * 113.61337 * 183.46996 * 15 14 13 28 28 H 1.08995 * 109.47400 * 299.99979 * 1 2 3 29 29 H 1.08998 * 109.47528 * 60.00320 * 1 2 3 30 30 H 1.09002 * 109.46637 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47261 * 240.00307 * 2 1 3 32 32 H 1.09004 * 109.47082 * 180.02562 * 3 2 1 33 33 H 1.09009 * 109.47420 * 299.99655 * 3 2 1 34 34 H 1.08995 * 109.47152 * 59.99869 * 3 2 1 35 35 H 1.08999 * 110.48056 * 224.99523 * 7 5 4 36 36 H 1.08995 * 110.48937 * 102.35926 * 7 5 4 37 37 H 1.09005 * 110.97404 * 266.68395 * 8 7 5 38 38 H 1.09000 * 110.96535 * 142.91907 * 8 7 5 39 39 H 0.96999 * 120.00146 * 359.97438 * 13 11 9 40 40 H 1.09000 * 109.47232 * 59.99775 * 14 13 11 41 41 H 1.08997 * 109.47041 * 299.99591 * 14 13 11 42 42 H 1.09002 * 112.85017 * 314.66585 * 15 14 13 43 43 H 1.08992 * 113.61675 * 254.61398 * 16 15 14 44 44 H 1.09000 * 113.60973 * 25.51686 * 16 15 14 45 45 H 1.09005 * 113.62125 * 220.02158 * 17 16 15 46 46 H 0.97002 * 119.99803 * 287.47074 * 18 17 16 47 47 H 0.97002 * 119.99454 * 180.02562 * 22 21 19 48 48 H 1.08999 * 113.61567 * 334.48261 * 27 15 14 49 49 H 1.09000 * 113.61379 * 105.30384 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.7475 -0.3102 2.4582 6 8 1.0752 0.6517 2.7642 7 6 2.4056 -1.2550 3.4395 8 6 2.7631 -2.4962 2.5893 9 6 2.8657 -1.8887 1.1727 10 1 3.8980 -1.6164 0.9529 11 6 2.3557 -2.8680 0.1472 12 8 1.3864 -2.5906 -0.5269 13 7 2.9768 -4.0522 -0.0210 14 6 2.4814 -5.0041 -1.0184 15 6 3.3586 -6.2577 -1.0069 16 6 2.9301 -7.2998 0.0397 17 6 3.2378 -8.3729 -1.0219 18 7 4.6249 -8.8436 -0.9981 19 6 4.9155 -10.0942 -0.5220 20 1 4.1221 -10.7334 -0.1636 21 6 6.2299 -10.5400 -0.4989 22 7 7.1968 -9.7608 -0.9352 23 14 6.6264 -12.2458 0.1512 24 1 6.5752 -13.2248 -0.9642 25 1 7.9866 -12.2446 0.7468 26 1 5.6324 -12.6238 1.1877 27 6 2.9731 -7.2891 -2.0803 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8901 34 1 1.6765 1.9563 0.8899 35 1 1.7101 -1.5246 4.2343 36 1 3.3068 -0.8055 3.8562 37 1 1.9707 -3.2432 2.6370 38 1 3.7170 -2.9211 2.9016 39 1 3.7523 -4.2740 0.5178 40 1 2.5162 -4.5458 -2.0068 41 1 1.4534 -5.2774 -0.7806 42 1 4.4240 -6.0286 -0.9841 43 1 3.5870 -7.3419 0.9084 44 1 1.8752 -7.2409 0.3079 45 1 2.5144 -9.1881 -1.0413 46 1 5.3375 -8.2693 -1.3195 47 1 8.1152 -10.0725 -0.9194 48 1 1.9300 -7.2274 -2.3906 49 1 3.6641 -7.3217 -2.9227 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091201118.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:23 Heat of formation + Delta-G solvation = -63.140521 kcal Electronic energy + Delta-G solvation = -27772.928658 eV Core-core repulsion = 23927.796180 eV Total energy + Delta-G solvation = -3845.132478 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -42.06910 -40.50390 -39.66816 -37.30615 -36.24880 -35.78073 -34.85809 -32.09393 -31.01777 -30.04678 -28.13210 -27.89333 -26.39768 -25.62985 -23.81161 -23.38189 -22.96742 -21.61203 -20.04254 -19.68201 -19.29506 -18.41298 -17.98818 -17.02875 -16.77627 -16.65344 -16.32076 -16.06882 -15.76740 -15.53534 -15.16348 -14.96826 -14.75321 -14.63696 -14.59823 -14.36318 -13.93939 -13.65878 -13.64166 -13.25454 -13.04706 -12.99536 -12.88828 -12.85687 -12.77499 -12.61035 -12.22247 -12.13945 -12.08687 -12.02964 -12.01455 -11.50716 -11.44169 -11.04604 -10.89836 -10.77883 -10.57022 -10.02722 -9.72715 -8.96957 -7.93731 -5.21275 1.48355 1.50044 1.50755 1.58011 1.59015 1.82874 2.28679 2.57460 3.27606 3.39090 3.43208 3.67358 3.76693 3.84141 3.92545 3.96495 4.04316 4.12060 4.15103 4.19447 4.32616 4.36710 4.44990 4.53148 4.67921 4.70835 4.76416 4.78658 4.81939 4.87281 4.92486 4.96689 4.99133 5.03668 5.05658 5.14596 5.17108 5.27303 5.35063 5.39798 5.51981 5.58641 5.60922 5.70371 6.12236 6.30476 6.55847 7.12102 7.23486 7.35802 8.13314 8.35398 9.29419 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.023534 B = 0.002243 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.477080 B =12478.230395 C =13059.297736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.157 3.843 3 C -0.160 4.160 4 N -0.598 5.598 5 C 0.507 3.493 6 O -0.571 6.571 7 C -0.146 4.146 8 C -0.114 4.114 9 C 0.110 3.890 10 H 0.137 0.863 11 C 0.504 3.496 12 O -0.566 6.566 13 N -0.709 5.709 14 C 0.143 3.857 15 C -0.099 4.099 16 C -0.151 4.151 17 C 0.141 3.859 18 N -0.719 5.719 19 C -0.241 4.241 20 H 0.075 0.925 21 C -0.074 4.074 22 N -0.968 5.968 23 Si 0.969 3.031 24 H -0.290 1.290 25 H -0.296 1.296 26 H -0.270 1.270 27 C -0.137 4.137 28 H 0.044 0.956 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.049 0.951 35 H 0.110 0.890 36 H 0.132 0.868 37 H 0.081 0.919 38 H 0.138 0.862 39 H 0.415 0.585 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.053 0.947 44 H 0.089 0.911 45 H 0.055 0.945 46 H 0.375 0.625 47 H 0.251 0.749 48 H 0.102 0.898 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.271 18.524 5.222 20.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.055 3.945 3 C -0.218 4.218 4 N -0.331 5.331 5 C 0.296 3.704 6 O -0.451 6.451 7 C -0.186 4.186 8 C -0.152 4.152 9 C 0.003 3.997 10 H 0.154 0.846 11 C 0.289 3.711 12 O -0.445 6.445 13 N -0.361 5.361 14 C 0.019 3.981 15 C -0.118 4.118 16 C -0.191 4.191 17 C 0.031 3.969 18 N -0.357 5.357 19 C -0.372 4.372 20 H 0.093 0.907 21 C -0.266 4.266 22 N -0.618 5.618 23 Si 0.799 3.201 24 H -0.217 1.217 25 H -0.223 1.223 26 H -0.195 1.195 27 C -0.177 4.177 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.129 0.871 36 H 0.150 0.850 37 H 0.100 0.900 38 H 0.156 0.844 39 H 0.252 0.748 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.103 0.897 43 H 0.072 0.928 44 H 0.108 0.892 45 H 0.074 0.926 46 H 0.207 0.793 47 H 0.060 0.940 48 H 0.120 0.880 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.361 19.056 4.885 21.786 hybrid contribution 0.893 -0.911 0.078 1.278 sum -8.468 18.144 4.963 20.629 Atomic orbital electron populations 1.21976 0.95502 1.01537 1.01799 1.20928 0.94239 0.92491 0.86878 1.22152 1.01498 0.95412 1.02746 1.48363 1.50592 1.27730 1.06464 1.21625 0.79212 0.85109 0.84424 1.90671 1.41410 1.31075 1.81946 1.22418 1.03807 0.94688 0.97669 1.22733 1.06386 0.96929 0.89171 1.21893 0.96625 0.84587 0.96613 0.84560 1.21032 0.83210 0.82831 0.84013 1.90711 1.28050 1.77239 1.48457 1.45903 1.33470 1.16459 1.40233 1.21248 0.97317 0.87873 0.91626 1.22478 0.99304 0.92275 0.97763 1.23717 1.00776 0.97146 0.97462 1.21448 0.85946 0.93892 0.95573 1.42279 1.03063 1.15461 1.74900 1.19646 0.92322 0.92700 1.32577 0.90700 1.25500 0.95861 1.01941 1.03292 1.69799 0.99470 1.37970 1.54601 0.85198 0.76918 0.80074 0.77926 1.21735 1.22261 1.19475 1.23349 1.02098 0.95525 0.96687 0.93641 0.90868 0.93356 0.89064 0.91767 0.90261 0.93176 0.87120 0.85005 0.89996 0.84386 0.74811 0.92007 0.91690 0.89664 0.92850 0.89239 0.92634 0.79264 0.94033 0.87994 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.03 71.98 0.65 -2.88 16 2 C 0.16 3.28 2.38 44.99 0.11 3.39 16 3 C -0.16 -2.94 9.20 71.98 0.66 -2.28 16 4 N -0.60 -11.41 2.59 -774.31 -2.00 -13.42 16 5 C 0.51 10.60 7.42 87.87 0.65 11.25 16 6 O -0.57 -16.64 15.14 -3.03 -0.05 -16.68 16 7 C -0.15 -1.60 6.86 30.59 0.21 -1.39 16 8 C -0.11 -0.94 6.64 31.65 0.21 -0.73 16 9 C 0.11 1.43 3.70 44.70 0.17 1.60 16 10 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16 11 C 0.50 9.40 6.85 87.65 0.60 10.00 16 12 O -0.57 -14.96 12.91 -3.02 -0.04 -15.00 16 13 N -0.71 -11.65 5.51 -463.06 -2.55 -14.20 16 14 C 0.14 2.92 5.50 86.38 0.47 3.40 16 15 C -0.10 -2.42 3.63 -10.26 -0.04 -2.45 16 16 C -0.15 -4.20 7.45 31.21 0.23 -3.96 16 17 C 0.14 5.01 4.57 45.61 0.21 5.22 16 18 N -0.72 -33.64 5.31 -320.00 -1.70 -35.35 16 19 C -0.24 -12.71 9.97 84.03 0.84 -11.87 16 20 H 0.08 3.82 7.83 -2.91 -0.02 3.80 16 21 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 22 N -0.97 -56.62 13.06 21.65 0.28 -56.34 16 23 Si 0.97 44.36 29.55 68.60 2.03 46.38 16 24 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 25 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 26 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 27 C -0.14 -3.82 7.39 31.12 0.23 -3.59 16 28 H 0.04 1.21 6.80 -2.39 -0.02 1.19 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.05 1.30 7.07 -2.39 -0.02 1.28 16 31 H 0.09 1.99 6.53 -2.39 -0.02 1.97 16 32 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.05 1.13 6.79 -2.39 -0.02 1.12 16 35 H 0.11 1.13 8.14 -2.39 -0.02 1.12 16 36 H 0.13 0.84 8.14 -2.39 -0.02 0.83 16 37 H 0.08 0.85 7.91 -2.38 -0.02 0.83 16 38 H 0.14 0.24 8.14 -2.39 -0.02 0.22 16 39 H 0.42 5.03 8.47 -92.71 -0.79 4.25 16 40 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.06 1.41 7.88 -2.39 -0.02 1.39 16 42 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.09 2.14 7.92 -2.39 -0.02 2.12 16 45 H 0.06 2.02 8.10 -2.38 -0.02 2.00 16 46 H 0.38 18.77 7.90 -92.71 -0.73 18.03 16 47 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 48 H 0.10 2.35 8.10 -2.39 -0.02 2.33 16 49 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -72.32 390.62 1.08 -71.25 By element: Atomic # 1 Polarization: 31.79 SS G_CDS: -0.56 Total: 31.22 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: 5.67 Total: 2.13 kcal Atomic # 7 Polarization: -113.33 SS G_CDS: -5.97 Total: -119.30 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -0.08 Total: -31.68 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -72.32 1.08 -71.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091201118.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.108 kcal (2) G-P(sol) polarization free energy of solvation -72.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds