Wall clock time and date at job start Fri Apr 10 2020 18:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.46646 * 2 1 4 4 O 1.21276 * 120.00380 * 0.02562 * 3 2 1 5 5 N 1.34785 * 119.99713 * 180.02562 * 3 2 1 6 6 C 1.47022 * 125.64899 * 0.02633 * 5 3 2 7 7 C 1.54326 * 107.27078 * 178.89636 * 6 5 3 8 8 C 1.55166 * 102.94011 * 337.80739 * 7 6 5 9 9 H 1.09001 * 111.00146 * 277.38733 * 8 7 6 10 10 C 1.50700 * 111.00179 * 153.57973 * 8 7 6 11 11 O 1.21278 * 119.99633 * 241.45316 * 10 8 7 12 12 N 1.34770 * 120.00123 * 61.44841 * 10 8 7 13 13 C 1.46506 * 119.99961 * 179.97438 * 12 10 8 14 14 C 1.53003 * 109.47143 * 180.02562 * 13 12 10 15 15 C 1.53773 * 113.61272 * 184.99841 * 14 13 12 16 16 C 1.53781 * 87.08290 * 220.01886 * 15 14 13 17 17 N 1.46498 * 113.61376 * 139.98372 * 16 15 14 18 18 C 1.36943 * 119.99727 * 156.53173 * 17 16 15 19 19 H 1.07998 * 120.00392 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99586 * 179.97438 * 18 17 16 21 21 N 1.31618 * 120.00460 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99694 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47297 * 179.97438 * 22 20 18 24 24 H 1.48503 * 109.47261 * 60.00129 * 22 20 18 25 25 H 1.48500 * 109.47454 * 300.00122 * 22 20 18 26 26 C 1.53780 * 87.17069 * 25.39337 * 16 15 14 27 27 C 1.47422 * 125.64636 * 179.97438 * 5 3 2 28 28 H 1.09003 * 109.47219 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47382 * 299.99431 * 1 2 3 30 30 H 1.08995 * 109.47609 * 59.99777 * 1 2 3 31 31 H 1.08998 * 109.46978 * 240.00634 * 2 1 3 32 32 H 1.08995 * 109.47609 * 120.00223 * 2 1 3 33 33 H 1.08995 * 109.88231 * 59.47704 * 6 5 3 34 34 H 1.09003 * 109.87864 * 298.31190 * 6 5 3 35 35 H 1.08998 * 110.71876 * 219.44281 * 7 6 5 36 36 H 1.08998 * 110.72116 * 96.16779 * 7 6 5 37 37 H 0.96999 * 120.00510 * 0.02562 * 12 10 8 38 38 H 1.09000 * 109.46889 * 60.00441 * 13 12 10 39 39 H 1.09005 * 109.47085 * 300.00232 * 13 12 10 40 40 H 1.08998 * 112.85098 * 316.19985 * 14 13 12 41 41 H 1.09010 * 113.61387 * 105.47239 * 15 14 13 42 42 H 1.08997 * 113.62001 * 334.56801 * 15 14 13 43 43 H 1.09001 * 113.61363 * 270.80191 * 16 15 14 44 44 H 0.96998 * 120.00095 * 336.52633 * 17 16 15 45 45 H 0.97001 * 119.99952 * 359.97438 * 21 20 18 46 46 H 1.08997 * 113.61400 * 89.15918 * 26 16 15 47 47 H 1.09003 * 113.60964 * 220.06596 * 26 16 15 48 48 H 1.08997 * 110.37101 * 85.33367 * 27 5 3 49 49 H 1.09003 * 110.36921 * 323.00912 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2441 2.3426 0.0005 5 7 3.3573 1.6672 -0.0005 6 6 4.4181 0.6492 -0.0017 7 6 5.7689 1.3951 -0.0303 8 6 5.3881 2.7811 -0.6148 9 1 5.3387 2.7459 -1.7031 10 6 6.3518 3.8444 -0.1548 11 8 5.9523 4.7806 0.5046 12 7 7.6576 3.7550 -0.4761 13 6 8.5944 4.7891 -0.0294 14 6 10.0017 4.4510 -0.5255 15 6 11.0848 5.4119 -0.0074 16 6 11.7101 5.3382 -1.4104 17 7 12.2163 6.6245 -1.8955 18 6 13.1925 6.6582 -2.8554 19 1 13.5894 5.7365 -3.2545 20 6 13.6717 7.8770 -3.3154 21 7 13.1883 9.0003 -2.8287 22 14 15.0037 7.9229 -4.6242 23 1 15.3381 9.3347 -4.9410 24 1 14.5159 7.2431 -5.8511 25 1 16.2157 7.2274 -4.1217 26 6 10.3067 4.9913 -1.9345 27 6 3.9830 3.0020 -0.0011 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 4.3247 0.0175 -0.8849 34 1 4.3494 0.0413 0.9005 35 1 6.4780 0.8837 -0.6811 36 1 6.1734 1.4991 0.9765 37 1 7.9772 3.0064 -1.0037 38 1 8.5937 4.8339 1.0597 39 1 8.2894 5.7546 -0.4331 40 1 10.2543 3.3985 -0.3974 41 1 11.7124 4.9822 0.7735 42 1 10.7047 6.4005 0.2499 43 1 12.4314 4.5291 -1.5250 44 1 11.8600 7.4524 -1.5369 45 1 12.4969 8.9765 -2.1488 46 1 9.7134 5.8647 -2.2051 47 1 10.3069 4.2224 -2.7072 48 1 4.0692 3.3811 1.0172 49 1 3.4048 3.6918 -0.6160 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091315318.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:42 Heat of formation + Delta-G solvation = -50.475681 kcal Electronic energy + Delta-G solvation = -26616.119623 eV Core-core repulsion = 22771.536334 eV Total energy + Delta-G solvation = -3844.583289 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -40.86084 -39.77230 -38.68234 -37.47273 -34.90883 -33.66988 -33.35414 -32.15486 -30.12615 -29.66513 -27.56080 -25.58625 -25.22611 -23.74208 -23.15638 -22.69087 -21.27815 -20.35574 -19.60511 -19.13608 -17.88237 -17.64079 -17.29436 -16.31820 -16.16624 -15.85250 -15.54419 -15.18838 -14.92507 -14.67203 -14.10764 -14.01146 -13.77403 -13.63602 -13.45798 -13.40140 -13.14333 -12.83207 -12.68439 -12.42351 -12.10286 -12.04845 -11.97369 -11.76051 -11.65078 -11.59882 -11.40878 -11.01848 -10.78466 -10.44571 -10.37253 -10.23763 -10.03180 -9.97249 -9.87199 -9.21326 -9.12740 -9.08763 -8.90746 -7.07295 -6.14231 -3.14498 2.24451 2.36972 2.43818 3.03597 3.49135 3.52529 3.70380 3.78070 3.91083 4.23601 4.31543 4.59231 4.60046 4.63533 4.66506 4.73968 4.76368 4.83898 4.89963 4.95080 5.08139 5.09460 5.17736 5.34245 5.36037 5.37101 5.44274 5.47937 5.50552 5.59918 5.70037 5.71309 5.75938 5.81566 5.84544 5.88051 6.12481 6.15739 6.21517 6.31539 6.46203 6.67394 6.97760 7.04476 7.29545 7.76327 7.76811 8.00161 8.71481 9.18333 10.04736 10.19628 11.33836 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.032990 B = 0.001702 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.537851 B =16444.202874 C =16454.723698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.526 3.474 4 O -0.536 6.536 5 N -0.624 5.624 6 C 0.102 3.898 7 C -0.122 4.122 8 C -0.126 4.126 9 H 0.113 0.887 10 C 0.522 3.478 11 O -0.537 6.537 12 N -0.721 5.721 13 C 0.131 3.869 14 C -0.126 4.126 15 C -0.143 4.143 16 C 0.171 3.829 17 N -0.725 5.725 18 C -0.337 4.337 19 H 0.065 0.935 20 C -0.044 4.044 21 N -0.942 5.942 22 Si 1.080 2.920 23 H -0.285 1.285 24 H -0.295 1.295 25 H -0.295 1.295 26 C -0.160 4.160 27 C 0.126 3.874 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.401 0.599 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.063 0.937 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.368 0.632 45 H 0.255 0.745 46 H 0.076 0.924 47 H 0.055 0.945 48 H 0.083 0.917 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.057 -24.096 6.633 31.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.178 4.178 3 C 0.315 3.685 4 O -0.413 6.413 5 N -0.360 5.360 6 C -0.022 4.022 7 C -0.161 4.161 8 C -0.148 4.148 9 H 0.131 0.869 10 C 0.307 3.693 11 O -0.413 6.413 12 N -0.372 5.372 13 C 0.008 3.992 14 C -0.145 4.145 15 C -0.183 4.183 16 C 0.059 3.941 17 N -0.364 5.364 18 C -0.468 4.468 19 H 0.083 0.917 20 C -0.242 4.242 21 N -0.587 5.587 22 Si 0.911 3.089 23 H -0.210 1.210 24 H -0.223 1.223 25 H -0.222 1.222 26 C -0.202 4.202 27 C 0.003 3.997 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.235 0.765 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.107 0.893 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.202 0.798 45 H 0.066 0.934 46 H 0.095 0.905 47 H 0.073 0.927 48 H 0.101 0.899 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -18.763 -22.072 6.078 29.600 hybrid contribution -0.773 -1.272 0.720 1.653 sum -19.536 -23.344 6.798 31.190 Atomic orbital electron populations 1.21549 0.92859 1.01691 1.03501 1.21616 0.98657 0.93314 1.04263 1.20523 0.80136 0.92076 0.75773 1.90733 1.54203 1.46791 1.49545 1.48569 1.05290 1.08003 1.74093 1.22058 0.86417 0.91375 1.02305 1.22676 0.96820 0.93666 1.02897 1.22486 0.94977 0.94701 1.02659 0.86853 1.20107 0.82767 0.86485 0.79949 1.90748 1.77678 1.33941 1.38949 1.46017 1.07646 1.27739 1.55791 1.21461 0.87507 0.90937 0.99278 1.22656 0.92891 0.99682 0.99258 1.23440 0.96668 0.98844 0.99355 1.21458 0.91804 0.90013 0.90838 1.42417 1.45531 1.01694 1.46760 1.20093 1.15369 0.94991 1.16386 0.91688 1.25805 1.03567 0.91319 1.03513 1.70887 1.30132 1.27014 1.30651 0.83242 0.74990 0.75697 0.74989 1.21000 1.22260 1.22224 1.23968 1.01878 1.00203 0.94113 1.21984 0.90584 0.84689 1.02419 0.91945 0.91913 0.91905 0.88919 0.88949 0.90752 0.90793 0.88811 0.89687 0.76527 0.91628 0.91193 0.89276 0.91869 0.90257 0.90633 0.79808 0.93351 0.90496 0.92664 0.89916 0.89672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.20 37.16 0.34 -0.50 16 2 C -0.14 -0.75 5.61 -27.89 -0.16 -0.91 16 3 C 0.53 5.02 7.85 -10.98 -0.09 4.93 16 4 O -0.54 -7.50 16.24 5.56 0.09 -7.41 16 5 N -0.62 -5.04 3.33 -170.52 -0.57 -5.61 16 6 C 0.10 0.43 6.49 -3.06 -0.02 0.41 16 7 C -0.12 -0.53 6.37 -24.89 -0.16 -0.69 16 8 C -0.13 -0.93 3.43 -89.62 -0.31 -1.24 16 9 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 10 C 0.52 5.66 7.16 -10.99 -0.08 5.58 16 11 O -0.54 -8.27 15.80 5.56 0.09 -8.18 16 12 N -0.72 -6.88 5.51 -60.29 -0.33 -7.21 16 13 C 0.13 1.57 5.51 -4.04 -0.02 1.55 16 14 C -0.13 -1.54 3.75 -89.72 -0.34 -1.88 16 15 C -0.14 -2.18 7.39 -25.92 -0.19 -2.37 16 16 C 0.17 3.23 4.47 -67.12 -0.30 2.93 16 17 N -0.72 -17.83 5.41 -52.64 -0.28 -18.12 16 18 C -0.34 -9.37 9.97 -15.06 -0.15 -9.52 16 19 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 20 C -0.04 -1.28 5.50 -17.43 -0.10 -1.37 16 21 N -0.94 -29.06 13.70 55.49 0.76 -28.30 16 22 Si 1.08 25.64 29.92 -169.99 -5.09 20.55 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.30 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 26 C -0.16 -2.53 7.45 -25.83 -0.19 -2.73 16 27 C 0.13 1.23 5.97 -2.53 -0.02 1.21 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 30 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 31 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.08 0.42 8.03 -51.93 -0.42 0.00 16 37 H 0.40 2.72 8.47 -40.82 -0.35 2.37 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.99 7.85 -51.93 -0.41 0.58 16 40 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.06 0.89 8.14 -51.92 -0.42 0.46 16 42 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 43 H 0.08 1.43 8.11 -51.93 -0.42 1.01 16 44 H 0.37 9.41 6.74 -40.82 -0.28 9.13 16 45 H 0.26 7.76 6.77 -40.82 -0.28 7.48 16 46 H 0.08 1.36 7.90 -51.93 -0.41 0.95 16 47 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.08 0.95 7.51 -51.93 -0.39 0.56 16 49 H 0.08 0.97 8.04 -51.93 -0.42 0.55 16 LS Contribution 398.43 15.07 6.00 6.00 Total: -1.00 -36.39 398.43 -9.57 -45.97 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -8.48 Total: 6.89 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -1.77 Total: -4.59 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: -0.42 Total: -59.23 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: 0.18 Total: -15.59 kcal Atomic # 14 Polarization: 25.64 SS G_CDS: -5.09 Total: 20.55 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.39 -9.57 -45.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091315318.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.506 kcal (2) G-P(sol) polarization free energy of solvation -36.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds