Wall clock time and date at job start Fri Apr 10 2020 18:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.46646 * 2 1 4 4 O 1.21276 * 120.00380 * 0.02562 * 3 2 1 5 5 N 1.34785 * 119.99713 * 180.02562 * 3 2 1 6 6 C 1.47022 * 125.64899 * 0.02633 * 5 3 2 7 7 C 1.54326 * 107.27078 * 178.89636 * 6 5 3 8 8 C 1.55166 * 102.94011 * 337.80739 * 7 6 5 9 9 H 1.09001 * 111.00146 * 277.38733 * 8 7 6 10 10 C 1.50700 * 111.00179 * 153.57973 * 8 7 6 11 11 O 1.21278 * 119.99633 * 241.45316 * 10 8 7 12 12 N 1.34770 * 120.00123 * 61.44841 * 10 8 7 13 13 C 1.46506 * 119.99961 * 179.97438 * 12 10 8 14 14 C 1.53003 * 109.47143 * 180.02562 * 13 12 10 15 15 C 1.53773 * 113.61272 * 184.99841 * 14 13 12 16 16 C 1.53781 * 87.08290 * 220.01886 * 15 14 13 17 17 N 1.46498 * 113.61376 * 139.98372 * 16 15 14 18 18 C 1.36943 * 119.99727 * 156.53173 * 17 16 15 19 19 H 1.07998 * 120.00392 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99586 * 179.97438 * 18 17 16 21 21 N 1.31618 * 120.00460 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99694 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47297 * 179.97438 * 22 20 18 24 24 H 1.48503 * 109.47261 * 60.00129 * 22 20 18 25 25 H 1.48500 * 109.47454 * 300.00122 * 22 20 18 26 26 C 1.53780 * 87.17069 * 25.39337 * 16 15 14 27 27 C 1.47422 * 125.64636 * 179.97438 * 5 3 2 28 28 H 1.09003 * 109.47219 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47382 * 299.99431 * 1 2 3 30 30 H 1.08995 * 109.47609 * 59.99777 * 1 2 3 31 31 H 1.08998 * 109.46978 * 240.00634 * 2 1 3 32 32 H 1.08995 * 109.47609 * 120.00223 * 2 1 3 33 33 H 1.08995 * 109.88231 * 59.47704 * 6 5 3 34 34 H 1.09003 * 109.87864 * 298.31190 * 6 5 3 35 35 H 1.08998 * 110.71876 * 219.44281 * 7 6 5 36 36 H 1.08998 * 110.72116 * 96.16779 * 7 6 5 37 37 H 0.96999 * 120.00510 * 0.02562 * 12 10 8 38 38 H 1.09000 * 109.46889 * 60.00441 * 13 12 10 39 39 H 1.09005 * 109.47085 * 300.00232 * 13 12 10 40 40 H 1.08998 * 112.85098 * 316.19985 * 14 13 12 41 41 H 1.09010 * 113.61387 * 105.47239 * 15 14 13 42 42 H 1.08997 * 113.62001 * 334.56801 * 15 14 13 43 43 H 1.09001 * 113.61363 * 270.80191 * 16 15 14 44 44 H 0.96998 * 120.00095 * 336.52633 * 17 16 15 45 45 H 0.97001 * 119.99952 * 359.97438 * 21 20 18 46 46 H 1.08997 * 113.61400 * 89.15918 * 26 16 15 47 47 H 1.09003 * 113.60964 * 220.06596 * 26 16 15 48 48 H 1.08997 * 110.37101 * 85.33367 * 27 5 3 49 49 H 1.09003 * 110.36921 * 323.00912 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2441 2.3426 0.0005 5 7 3.3573 1.6672 -0.0005 6 6 4.4181 0.6492 -0.0017 7 6 5.7689 1.3951 -0.0303 8 6 5.3881 2.7811 -0.6148 9 1 5.3387 2.7459 -1.7031 10 6 6.3518 3.8444 -0.1548 11 8 5.9523 4.7806 0.5046 12 7 7.6576 3.7550 -0.4761 13 6 8.5944 4.7891 -0.0294 14 6 10.0017 4.4510 -0.5255 15 6 11.0848 5.4119 -0.0074 16 6 11.7101 5.3382 -1.4104 17 7 12.2163 6.6245 -1.8955 18 6 13.1925 6.6582 -2.8554 19 1 13.5894 5.7365 -3.2545 20 6 13.6717 7.8770 -3.3154 21 7 13.1883 9.0003 -2.8287 22 14 15.0037 7.9229 -4.6242 23 1 15.3381 9.3347 -4.9410 24 1 14.5159 7.2431 -5.8511 25 1 16.2157 7.2274 -4.1217 26 6 10.3067 4.9913 -1.9345 27 6 3.9830 3.0020 -0.0011 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 4.3247 0.0175 -0.8849 34 1 4.3494 0.0413 0.9005 35 1 6.4780 0.8837 -0.6811 36 1 6.1734 1.4991 0.9765 37 1 7.9772 3.0064 -1.0037 38 1 8.5937 4.8339 1.0597 39 1 8.2894 5.7546 -0.4331 40 1 10.2543 3.3985 -0.3974 41 1 11.7124 4.9822 0.7735 42 1 10.7047 6.4005 0.2499 43 1 12.4314 4.5291 -1.5250 44 1 11.8600 7.4524 -1.5369 45 1 12.4969 8.9765 -2.1488 46 1 9.7134 5.8647 -2.2051 47 1 10.3069 4.2224 -2.7072 48 1 4.0692 3.3811 1.0172 49 1 3.4048 3.6918 -0.6160 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091315318.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:37 Heat of formation + Delta-G solvation = -77.040514 kcal Electronic energy + Delta-G solvation = -26617.271560 eV Core-core repulsion = 22771.536334 eV Total energy + Delta-G solvation = -3845.735226 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 5.33 seconds Orbital eigenvalues (eV) -41.59618 -40.66932 -39.90721 -38.20840 -36.30959 -35.24478 -33.94194 -32.80817 -31.88649 -30.21558 -28.74802 -26.54736 -26.34814 -25.57614 -23.78748 -23.35232 -22.53297 -21.27203 -20.42623 -20.16293 -19.36185 -18.56044 -18.24136 -17.30049 -16.97311 -16.70954 -16.62585 -16.31626 -15.98224 -15.70588 -15.58189 -15.19002 -14.73245 -14.61115 -14.47381 -14.24897 -13.89273 -13.55842 -13.43631 -13.33410 -13.14644 -13.12019 -12.87758 -12.62775 -12.60263 -12.53331 -12.35988 -12.08727 -12.06583 -11.85809 -11.82345 -11.64922 -11.39904 -11.08483 -10.98723 -10.87127 -10.78551 -10.13271 -9.74312 -9.08881 -8.39280 -5.32932 1.52931 1.56605 1.58558 1.68748 1.77059 1.84847 2.26759 2.72756 3.19652 3.37947 3.42287 3.62422 3.67144 3.73480 3.74640 3.86667 4.11079 4.12837 4.18749 4.21688 4.25168 4.26677 4.30026 4.34715 4.49322 4.56885 4.68774 4.73179 4.76813 4.83040 4.89238 4.89597 4.93688 4.98385 4.99888 5.03759 5.11722 5.15315 5.21841 5.29300 5.35240 5.38705 5.60125 5.66468 6.44195 6.48415 6.52480 7.09322 7.09850 7.19806 8.00256 8.13369 9.12394 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.032990 B = 0.001702 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.537851 B =16444.202874 C =16454.723698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.128 4.128 3 C 0.513 3.487 4 O -0.597 6.597 5 N -0.622 5.622 6 C 0.096 3.904 7 C -0.113 4.113 8 C -0.114 4.114 9 H 0.134 0.866 10 C 0.520 3.480 11 O -0.590 6.590 12 N -0.705 5.705 13 C 0.137 3.863 14 C -0.089 4.089 15 C -0.139 4.139 16 C 0.145 3.855 17 N -0.744 5.744 18 C -0.333 4.333 19 H 0.071 0.929 20 C -0.109 4.109 21 N -0.978 5.978 22 Si 1.128 2.872 23 H -0.296 1.296 24 H -0.277 1.277 25 H -0.275 1.275 26 C -0.153 4.153 27 C 0.122 3.878 28 H 0.089 0.911 29 H 0.041 0.959 30 H 0.043 0.957 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.131 0.869 36 H 0.080 0.920 37 H 0.420 0.580 38 H 0.066 0.934 39 H 0.041 0.959 40 H 0.129 0.871 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.080 0.920 44 H 0.357 0.643 45 H 0.242 0.758 46 H 0.051 0.949 47 H 0.071 0.929 48 H 0.056 0.944 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.167 -28.930 6.064 34.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.304 3.696 4 O -0.478 6.478 5 N -0.356 5.356 6 C -0.025 4.025 7 C -0.151 4.151 8 C -0.136 4.136 9 H 0.152 0.848 10 C 0.307 3.693 11 O -0.471 6.471 12 N -0.357 5.357 13 C 0.013 3.987 14 C -0.108 4.108 15 C -0.178 4.178 16 C 0.036 3.964 17 N -0.383 5.383 18 C -0.464 4.464 19 H 0.089 0.911 20 C -0.300 4.300 21 N -0.627 5.627 22 Si 0.953 3.047 23 H -0.223 1.223 24 H -0.203 1.203 25 H -0.201 1.201 26 C -0.193 4.193 27 C -0.002 4.002 28 H 0.108 0.892 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.141 0.859 32 H 0.137 0.863 33 H 0.123 0.877 34 H 0.112 0.888 35 H 0.149 0.851 36 H 0.099 0.901 37 H 0.257 0.743 38 H 0.084 0.916 39 H 0.060 0.940 40 H 0.147 0.853 41 H 0.099 0.901 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.189 0.811 45 H 0.052 0.948 46 H 0.069 0.931 47 H 0.089 0.911 48 H 0.074 0.926 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.851 -27.041 5.512 32.867 hybrid contribution -1.083 0.191 0.956 1.457 sum -18.934 -26.851 6.468 33.486 Atomic orbital electron populations 1.21564 0.93789 1.02757 1.01633 1.21678 0.97761 0.90475 1.06820 1.21449 0.80122 0.93354 0.74633 1.90704 1.55835 1.48850 1.52393 1.48696 1.05826 1.08133 1.72949 1.22413 0.84686 0.90640 1.04800 1.22779 0.97740 0.91315 1.03278 1.22401 0.92186 0.95403 1.03562 0.84810 1.20712 0.83309 0.86393 0.78880 1.90736 1.78590 1.36279 1.41479 1.45810 1.06911 1.27550 1.55430 1.21208 0.87789 0.90530 0.99169 1.22480 0.91936 1.00856 0.95568 1.23331 0.97556 0.99257 0.97686 1.21939 0.93115 0.87791 0.93570 1.42669 1.45508 1.03394 1.46748 1.20491 1.14933 0.95023 1.15962 0.91071 1.27244 1.05830 0.91216 1.05698 1.71001 1.31420 1.28238 1.32012 0.82623 0.73348 0.75317 0.73413 1.22268 1.20291 1.20119 1.23736 0.99020 0.99879 0.96714 1.21796 0.92162 0.85620 1.00573 0.89227 0.93942 0.93768 0.85943 0.86305 0.87699 0.88789 0.85078 0.90092 0.74282 0.91572 0.94036 0.85348 0.90124 0.91807 0.90245 0.81078 0.94755 0.93060 0.91069 0.92567 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.20 71.98 0.66 -0.89 16 2 C -0.13 -1.05 5.61 29.85 0.17 -0.88 16 3 C 0.51 9.56 7.85 87.66 0.69 10.25 16 4 O -0.60 -17.81 16.24 -3.02 -0.05 -17.85 16 5 N -0.62 -9.21 3.33 -811.80 -2.70 -11.91 16 6 C 0.10 0.40 6.49 86.73 0.56 0.97 16 7 C -0.11 -0.50 6.37 31.79 0.20 -0.30 16 8 C -0.11 -1.46 3.43 -10.15 -0.03 -1.49 16 9 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 10 C 0.52 10.77 7.16 87.66 0.63 11.40 16 11 O -0.59 -18.87 15.80 -3.02 -0.05 -18.91 16 12 N -0.71 -11.67 5.51 -463.05 -2.55 -14.22 16 13 C 0.14 3.09 5.51 86.38 0.48 3.56 16 14 C -0.09 -1.93 3.75 -10.21 -0.04 -1.97 16 15 C -0.14 -4.02 7.39 31.12 0.23 -3.79 16 16 C 0.15 5.32 4.47 45.52 0.20 5.53 16 17 N -0.74 -37.11 5.41 -320.45 -1.73 -38.84 16 18 C -0.33 -18.51 9.97 84.03 0.84 -17.67 16 19 H 0.07 3.79 7.83 -2.91 -0.02 3.76 16 20 C -0.11 -6.35 5.50 84.86 0.47 -5.88 16 21 N -0.98 -62.07 13.70 21.65 0.30 -61.78 16 22 Si 1.13 51.60 29.92 68.60 2.05 53.65 16 23 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 24 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 25 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 26 C -0.15 -4.58 7.45 31.18 0.23 -4.35 16 27 C 0.12 2.46 5.97 86.85 0.52 2.98 16 28 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.04 0.63 8.10 -2.38 -0.02 0.61 16 30 H 0.04 0.65 8.10 -2.39 -0.02 0.63 16 31 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.10 -0.09 8.14 -2.39 -0.02 -0.11 16 34 H 0.09 0.10 8.14 -2.39 -0.02 0.08 16 35 H 0.13 -0.31 8.14 -2.39 -0.02 -0.33 16 36 H 0.08 0.48 8.03 -2.39 -0.02 0.46 16 37 H 0.42 3.80 8.47 -92.71 -0.79 3.01 16 38 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.04 1.20 7.85 -2.38 -0.02 1.18 16 40 H 0.13 1.91 8.14 -2.39 -0.02 1.90 16 41 H 0.08 2.06 8.14 -2.38 -0.02 2.05 16 42 H 0.06 2.06 8.07 -2.39 -0.02 2.04 16 43 H 0.08 2.85 8.11 -2.39 -0.02 2.83 16 44 H 0.36 19.01 6.74 -92.71 -0.62 18.39 16 45 H 0.24 15.38 6.77 -92.71 -0.63 14.75 16 46 H 0.05 1.82 7.90 -2.39 -0.02 1.80 16 47 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 48 H 0.06 1.41 7.51 -2.39 -0.02 1.39 16 49 H 0.06 1.41 8.04 -2.39 -0.02 1.40 16 Total: -1.00 -86.72 398.43 0.75 -85.97 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: -0.33 Total: 26.44 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: 5.80 Total: -2.55 kcal Atomic # 7 Polarization: -120.06 SS G_CDS: -6.69 Total: -126.75 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: -0.10 Total: -36.77 kcal Atomic # 14 Polarization: 51.60 SS G_CDS: 2.05 Total: 53.65 kcal Total: -86.72 0.75 -85.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091315318.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.931 kcal (2) G-P(sol) polarization free energy of solvation -86.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.33 seconds