Wall clock time and date at job start Fri Apr 10 2020 18:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47040 * 2 1 4 4 H 1.09001 * 109.87323 * 306.49937 * 3 2 1 5 5 C 1.54320 * 110.01056 * 67.59590 * 3 2 1 6 6 C 1.55446 * 102.97054 * 141.68244 * 5 3 2 7 7 C 1.54916 * 101.44854 * 324.51746 * 6 5 3 8 8 N 1.47017 * 109.87977 * 185.48294 * 3 2 1 9 9 C 1.34771 * 125.65242 * 61.47009 * 8 3 2 10 10 O 1.21356 * 119.99733 * 355.39334 * 9 8 3 11 11 C 1.49453 * 120.00409 * 175.39049 * 9 8 3 12 12 O 1.21350 * 119.99488 * 0.02562 * 11 9 8 13 13 N 1.34777 * 119.99874 * 179.97438 * 11 9 8 14 14 C 1.46505 * 119.99600 * 180.02562 * 13 11 9 15 15 C 1.53003 * 109.46664 * 180.02562 * 14 13 11 16 16 C 1.53785 * 113.61181 * 274.13247 * 15 14 13 17 17 C 1.53950 * 87.01828 * 220.05421 * 16 15 14 18 18 N 1.46500 * 113.74310 * 139.94650 * 17 16 15 19 19 C 1.36936 * 120.00027 * 107.40135 * 18 17 16 20 20 H 1.08001 * 120.00295 * 359.97438 * 19 18 17 21 21 C 1.38810 * 120.00070 * 179.97438 * 19 18 17 22 22 N 1.31618 * 120.00078 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00021 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47384 * 60.00313 * 23 21 19 25 25 H 1.48505 * 109.47107 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47543 * 299.99749 * 23 21 19 27 27 C 1.53780 * 87.11475 * 25.36495 * 17 16 15 28 28 H 1.08996 * 109.46994 * 304.95701 * 1 2 3 29 29 H 1.09001 * 109.47210 * 64.96048 * 1 2 3 30 30 H 1.08996 * 109.46794 * 184.95912 * 1 2 3 31 31 H 1.08994 * 109.46967 * 240.00078 * 2 1 3 32 32 H 1.08997 * 109.47355 * 120.00011 * 2 1 3 33 33 H 1.08998 * 110.72352 * 260.04886 * 5 3 2 34 34 H 1.09006 * 110.72233 * 23.14492 * 5 3 2 35 35 H 1.08996 * 111.12151 * 206.46936 * 6 5 3 36 36 H 1.08997 * 111.01346 * 82.52574 * 6 5 3 37 37 H 1.08992 * 110.36720 * 278.11236 * 7 6 5 38 38 H 1.09003 * 110.36381 * 155.89585 * 7 6 5 39 39 H 0.96994 * 120.00370 * 0.02562 * 13 11 9 40 40 H 1.08999 * 109.46877 * 299.99935 * 14 13 11 41 41 H 1.08993 * 109.46964 * 59.99672 * 14 13 11 42 42 H 1.08991 * 112.85348 * 45.32962 * 15 14 13 43 43 H 1.09005 * 113.61404 * 334.56911 * 16 15 14 44 44 H 1.08997 * 113.61232 * 105.46924 * 16 15 14 45 45 H 1.09000 * 113.53407 * 270.81339 * 17 16 15 46 46 H 0.96995 * 119.99911 * 287.39735 * 18 17 16 47 47 H 0.97003 * 120.00647 * 180.02562 * 22 21 19 48 48 H 1.09005 * 113.61304 * 220.09417 * 27 17 16 49 49 H 1.08997 * 113.69274 * 89.20014 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5887 1.9951 -0.8240 5 6 1.6950 2.1246 1.3406 6 6 2.9540 2.9906 1.6256 7 6 4.0818 2.0864 1.0685 8 7 3.5042 1.4552 -0.1321 9 6 4.2028 0.9698 -1.1774 10 8 3.6270 0.3942 -2.0773 11 6 5.6867 1.1404 -1.2285 12 8 6.2625 1.7157 -0.3284 13 7 6.3853 0.6545 -2.2736 14 6 7.8400 0.8214 -2.3233 15 6 8.3828 0.1847 -3.6044 16 6 8.6702 -1.3201 -3.4703 17 6 9.9384 -1.0705 -4.3066 18 7 11.1076 -1.8222 -3.8438 19 6 11.5675 -2.8883 -4.5698 20 1 11.0681 -3.1753 -5.4833 21 6 12.6757 -3.6002 -4.1315 22 7 13.2847 -3.2501 -3.0185 23 14 13.3025 -5.0549 -5.1215 24 1 13.6838 -4.6000 -6.4827 25 1 14.4877 -5.6404 -4.4447 26 1 12.2343 -6.0814 -5.2237 27 6 9.8962 0.3792 -3.7954 28 1 -0.3633 0.5888 0.8422 29 1 -0.3634 0.4350 -0.9311 30 1 -0.3633 -1.0238 0.0888 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 0.8104 2.7529 1.2372 34 1 1.5492 1.3819 2.1250 35 1 3.0809 3.1592 2.6950 36 1 2.9085 3.9362 1.0854 37 1 4.3563 1.3275 1.8011 38 1 4.9515 2.6863 0.8006 39 1 5.9251 0.1944 -2.9928 40 1 8.0844 1.8836 -2.3142 41 1 8.2910 0.3373 -1.4572 42 1 7.7949 0.4400 -4.4859 43 1 8.8768 -1.6358 -2.4477 44 1 7.9345 -1.9512 -3.9688 45 1 9.7760 -1.1596 -5.3808 46 1 11.5560 -1.5646 -3.0232 47 1 14.0593 -3.7473 -2.7124 48 1 10.1489 1.1180 -4.5561 49 1 10.4384 0.5304 -2.8620 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100836519.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:19 Heat of formation + Delta-G solvation = -42.430831 kcal Electronic energy + Delta-G solvation = -27127.177060 eV Core-core repulsion = 23282.942622 eV Total energy + Delta-G solvation = -3844.234438 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.07298 -39.43827 -38.42998 -37.81151 -34.92714 -33.82031 -33.29517 -31.92372 -30.32881 -28.33487 -27.89224 -25.47990 -25.09655 -23.97255 -23.20183 -22.36428 -21.13271 -21.04553 -19.83162 -19.02795 -17.83819 -17.35322 -17.03564 -16.45808 -16.00520 -15.61443 -15.17313 -14.99371 -14.77195 -14.36441 -14.25526 -14.01583 -13.81144 -13.57689 -13.46521 -13.25633 -12.94547 -12.75218 -12.49086 -12.02279 -11.98670 -11.91682 -11.84674 -11.61173 -11.43084 -11.34102 -11.23281 -11.12597 -10.82708 -10.81777 -10.52518 -10.23058 -10.14528 -9.84781 -9.65005 -9.46728 -9.23095 -9.01748 -8.86729 -6.96792 -5.78324 -3.07234 1.28625 2.09029 3.06832 3.30085 3.43596 3.48044 3.49010 4.05715 4.14427 4.34131 4.38463 4.58209 4.72295 4.79464 4.88435 4.92806 4.93787 4.99129 5.08635 5.19435 5.27563 5.32920 5.45405 5.46707 5.48019 5.52015 5.57181 5.67655 5.73039 5.74452 5.75799 5.76465 5.86896 5.90361 6.06162 6.07837 6.15816 6.27655 6.33219 6.38574 6.59342 6.80587 6.88939 7.09891 7.12599 7.55503 7.68850 7.87658 8.40246 9.51237 10.09282 10.43520 11.43943 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.023360 B = 0.001992 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.338270 B =14053.207495 C =14482.609178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.139 4.139 3 C 0.136 3.864 4 H 0.079 0.921 5 C -0.128 4.128 6 C -0.136 4.136 7 C 0.091 3.909 8 N -0.589 5.589 9 C 0.521 3.479 10 O -0.520 6.520 11 C 0.506 3.494 12 O -0.521 6.521 13 N -0.691 5.691 14 C 0.130 3.870 15 C -0.129 4.129 16 C -0.162 4.162 17 C 0.166 3.834 18 N -0.712 5.712 19 C -0.245 4.245 20 H 0.071 0.929 21 C -0.013 4.013 22 N -0.933 5.933 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.141 4.141 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.107 0.893 39 H 0.413 0.587 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.078 0.922 44 H 0.055 0.945 45 H 0.076 0.924 46 H 0.385 0.615 47 H 0.256 0.744 48 H 0.062 0.938 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.594 14.039 8.755 30.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.177 4.177 3 C 0.033 3.967 4 H 0.097 0.903 5 C -0.166 4.166 6 C -0.174 4.174 7 C -0.031 4.031 8 N -0.324 5.324 9 C 0.305 3.695 10 O -0.395 6.395 11 C 0.286 3.714 12 O -0.398 6.398 13 N -0.343 5.343 14 C 0.008 3.992 15 C -0.148 4.148 16 C -0.204 4.204 17 C 0.054 3.946 18 N -0.350 5.350 19 C -0.376 4.376 20 H 0.089 0.911 21 C -0.210 4.210 22 N -0.580 5.580 23 Si 0.739 3.261 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.181 4.181 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.125 0.875 39 H 0.249 0.751 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.109 0.891 43 H 0.097 0.903 44 H 0.074 0.926 45 H 0.094 0.906 46 H 0.219 0.781 47 H 0.066 0.934 48 H 0.081 0.919 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -25.316 13.942 8.714 30.186 hybrid contribution 0.268 -0.996 -0.483 1.139 sum -25.047 12.946 8.230 29.372 Atomic orbital electron populations 1.21713 0.94913 1.02030 1.01858 1.21936 0.96372 0.95861 1.03536 1.21777 0.79312 0.97142 0.98468 0.90266 1.22802 0.98524 0.99222 0.96048 1.22900 0.94163 0.98369 1.02005 1.22755 0.97738 0.96614 0.86020 1.48344 1.07310 1.57879 1.18816 1.19917 0.88094 0.79735 0.81796 1.90753 1.71070 1.40667 1.37061 1.19975 0.87739 0.80458 0.83245 1.90695 1.70935 1.41355 1.36794 1.45878 1.09005 1.56428 1.22989 1.21619 0.77327 1.01134 0.99153 1.22669 0.97501 0.98481 0.96168 1.23994 1.01064 0.92871 1.02424 1.21541 0.87360 0.89398 0.96293 1.42396 1.30881 1.33716 1.28001 1.19261 1.08842 1.05233 1.04245 0.91129 1.24774 0.98534 0.99892 0.97752 1.69649 1.23085 1.42455 1.22860 0.86257 0.78114 0.82532 0.79207 1.21230 1.21694 1.21243 1.23444 0.92983 0.99901 1.01728 0.92566 0.92560 0.92376 0.90109 0.91752 0.89859 0.90146 0.89493 0.90487 0.90974 0.87451 0.75133 0.91138 0.90589 0.89123 0.90324 0.92589 0.90615 0.78068 0.93402 0.91885 0.90046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.83 37.16 0.37 -0.55 16 2 C -0.14 -1.15 5.41 -26.73 -0.14 -1.29 16 3 C 0.14 1.09 2.91 -66.96 -0.20 0.90 16 4 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 5 C -0.13 -0.67 5.57 -24.74 -0.14 -0.81 16 6 C -0.14 -0.76 7.11 -24.42 -0.17 -0.93 16 7 C 0.09 0.77 6.22 -2.52 -0.02 0.76 16 8 N -0.59 -6.00 3.07 -163.52 -0.50 -6.50 16 9 C 0.52 6.51 7.73 -11.59 -0.09 6.42 16 10 O -0.52 -7.33 15.27 5.49 0.08 -7.25 16 11 C 0.51 6.61 7.86 -11.58 -0.09 6.51 16 12 O -0.52 -7.53 13.71 5.50 0.08 -7.46 16 13 N -0.69 -8.45 5.55 -60.73 -0.34 -8.78 16 14 C 0.13 1.66 5.50 -4.04 -0.02 1.63 16 15 C -0.13 -1.71 3.75 -89.80 -0.34 -2.05 16 16 C -0.16 -2.69 7.45 -25.83 -0.19 -2.89 16 17 C 0.17 3.20 4.48 -67.03 -0.30 2.90 16 18 N -0.71 -17.71 5.41 -52.55 -0.28 -18.00 16 19 C -0.24 -6.77 9.97 -15.06 -0.15 -6.92 16 20 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -28.16 13.06 55.49 0.72 -27.44 16 23 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 C -0.14 -2.19 7.40 -25.92 -0.19 -2.38 16 28 H 0.06 0.27 7.36 -51.93 -0.38 -0.11 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.88 6.54 -51.93 -0.34 0.54 16 32 H 0.06 0.53 8.02 -51.93 -0.42 0.11 16 33 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.38 7.77 -51.93 -0.40 -0.02 16 35 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.11 1.07 5.89 -51.93 -0.31 0.77 16 39 H 0.41 4.68 7.94 -40.82 -0.32 4.35 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.08 1.07 7.88 -51.93 -0.41 0.66 16 42 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.08 1.43 7.92 -51.93 -0.41 1.02 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.08 1.45 8.10 -51.93 -0.42 1.03 16 46 H 0.39 10.18 7.93 -40.82 -0.32 9.85 16 47 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 48 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 49 H 0.08 1.32 8.08 -51.93 -0.42 0.90 16 LS Contribution 392.72 15.07 5.92 5.92 Total: -1.00 -31.84 392.72 -9.47 -41.31 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -8.35 Total: 10.01 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -1.77 Total: 0.82 kcal Atomic # 7 Polarization: -60.32 SS G_CDS: -0.40 Total: -60.72 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: 0.16 Total: -14.70 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.84 -9.47 -41.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100836519.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.119 kcal (2) G-P(sol) polarization free energy of solvation -31.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds