Wall clock time and date at job start Fri Apr 10 2020 18:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47040 * 2 1 4 4 H 1.09001 * 109.87323 * 306.49937 * 3 2 1 5 5 C 1.54320 * 110.01056 * 67.59590 * 3 2 1 6 6 C 1.55446 * 102.97054 * 141.68244 * 5 3 2 7 7 C 1.54916 * 101.44854 * 324.51746 * 6 5 3 8 8 N 1.47017 * 109.87977 * 185.48294 * 3 2 1 9 9 C 1.34771 * 125.65242 * 61.47009 * 8 3 2 10 10 O 1.21356 * 119.99733 * 355.39334 * 9 8 3 11 11 C 1.49453 * 120.00409 * 175.39049 * 9 8 3 12 12 O 1.21350 * 119.99488 * 0.02562 * 11 9 8 13 13 N 1.34777 * 119.99874 * 179.97438 * 11 9 8 14 14 C 1.46505 * 119.99600 * 180.02562 * 13 11 9 15 15 C 1.53003 * 109.46664 * 180.02562 * 14 13 11 16 16 C 1.53785 * 113.61181 * 274.13247 * 15 14 13 17 17 C 1.53950 * 87.01828 * 220.05421 * 16 15 14 18 18 N 1.46500 * 113.74310 * 139.94650 * 17 16 15 19 19 C 1.36936 * 120.00027 * 107.40135 * 18 17 16 20 20 H 1.08001 * 120.00295 * 359.97438 * 19 18 17 21 21 C 1.38810 * 120.00070 * 179.97438 * 19 18 17 22 22 N 1.31618 * 120.00078 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00021 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47384 * 60.00313 * 23 21 19 25 25 H 1.48505 * 109.47107 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47543 * 299.99749 * 23 21 19 27 27 C 1.53780 * 87.11475 * 25.36495 * 17 16 15 28 28 H 1.08996 * 109.46994 * 304.95701 * 1 2 3 29 29 H 1.09001 * 109.47210 * 64.96048 * 1 2 3 30 30 H 1.08996 * 109.46794 * 184.95912 * 1 2 3 31 31 H 1.08994 * 109.46967 * 240.00078 * 2 1 3 32 32 H 1.08997 * 109.47355 * 120.00011 * 2 1 3 33 33 H 1.08998 * 110.72352 * 260.04886 * 5 3 2 34 34 H 1.09006 * 110.72233 * 23.14492 * 5 3 2 35 35 H 1.08996 * 111.12151 * 206.46936 * 6 5 3 36 36 H 1.08997 * 111.01346 * 82.52574 * 6 5 3 37 37 H 1.08992 * 110.36720 * 278.11236 * 7 6 5 38 38 H 1.09003 * 110.36381 * 155.89585 * 7 6 5 39 39 H 0.96994 * 120.00370 * 0.02562 * 13 11 9 40 40 H 1.08999 * 109.46877 * 299.99935 * 14 13 11 41 41 H 1.08993 * 109.46964 * 59.99672 * 14 13 11 42 42 H 1.08991 * 112.85348 * 45.32962 * 15 14 13 43 43 H 1.09005 * 113.61404 * 334.56911 * 16 15 14 44 44 H 1.08997 * 113.61232 * 105.46924 * 16 15 14 45 45 H 1.09000 * 113.53407 * 270.81339 * 17 16 15 46 46 H 0.96995 * 119.99911 * 287.39735 * 18 17 16 47 47 H 0.97003 * 120.00647 * 180.02562 * 22 21 19 48 48 H 1.09005 * 113.61304 * 220.09417 * 27 17 16 49 49 H 1.08997 * 113.69274 * 89.20014 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5887 1.9951 -0.8240 5 6 1.6950 2.1246 1.3406 6 6 2.9540 2.9906 1.6256 7 6 4.0818 2.0864 1.0685 8 7 3.5042 1.4552 -0.1321 9 6 4.2028 0.9698 -1.1774 10 8 3.6270 0.3942 -2.0773 11 6 5.6867 1.1404 -1.2285 12 8 6.2625 1.7157 -0.3284 13 7 6.3853 0.6545 -2.2736 14 6 7.8400 0.8214 -2.3233 15 6 8.3828 0.1847 -3.6044 16 6 8.6702 -1.3201 -3.4703 17 6 9.9384 -1.0705 -4.3066 18 7 11.1076 -1.8222 -3.8438 19 6 11.5675 -2.8883 -4.5698 20 1 11.0681 -3.1753 -5.4833 21 6 12.6757 -3.6002 -4.1315 22 7 13.2847 -3.2501 -3.0185 23 14 13.3025 -5.0549 -5.1215 24 1 13.6838 -4.6000 -6.4827 25 1 14.4877 -5.6404 -4.4447 26 1 12.2343 -6.0814 -5.2237 27 6 9.8962 0.3792 -3.7954 28 1 -0.3633 0.5888 0.8422 29 1 -0.3634 0.4350 -0.9311 30 1 -0.3633 -1.0238 0.0888 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 0.8104 2.7529 1.2372 34 1 1.5492 1.3819 2.1250 35 1 3.0809 3.1592 2.6950 36 1 2.9085 3.9362 1.0854 37 1 4.3563 1.3275 1.8011 38 1 4.9515 2.6863 0.8006 39 1 5.9251 0.1944 -2.9928 40 1 8.0844 1.8836 -2.3142 41 1 8.2910 0.3373 -1.4572 42 1 7.7949 0.4400 -4.4859 43 1 8.8768 -1.6358 -2.4477 44 1 7.9345 -1.9512 -3.9688 45 1 9.7760 -1.1596 -5.3808 46 1 11.5560 -1.5646 -3.0232 47 1 14.0593 -3.7473 -2.7124 48 1 10.1489 1.1180 -4.5561 49 1 10.4384 0.5304 -2.8620 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100836519.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:18 Heat of formation + Delta-G solvation = -63.495479 kcal Electronic energy + Delta-G solvation = -27128.090491 eV Core-core repulsion = 23282.942622 eV Total energy + Delta-G solvation = -3845.147870 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.98547 -40.46466 -39.64492 -38.70980 -36.20403 -35.10611 -34.43970 -32.59734 -32.21464 -29.29072 -28.79841 -26.53465 -26.46968 -25.62658 -24.04476 -23.07247 -22.39696 -21.83695 -20.85999 -20.29962 -19.08208 -18.69099 -18.23377 -17.34582 -17.10469 -16.76520 -16.34199 -16.21428 -15.77588 -15.54624 -15.39585 -15.06349 -14.92860 -14.72418 -14.41729 -14.25455 -14.05198 -13.47284 -13.41305 -13.24123 -13.04297 -12.99980 -12.94792 -12.79458 -12.63631 -12.62634 -12.24884 -12.14834 -12.08582 -11.97658 -11.62168 -11.58103 -11.53313 -11.43866 -11.11759 -10.82321 -10.54462 -10.29756 -9.83836 -8.97724 -7.94550 -5.22747 0.28677 1.19610 1.46969 1.49907 1.55901 2.06978 2.41754 2.56712 3.22635 3.37288 3.59263 3.65604 3.70137 3.71261 3.84733 3.89591 4.17343 4.20651 4.24437 4.32401 4.32709 4.39184 4.45922 4.52359 4.54329 4.67978 4.72937 4.84550 4.91783 4.96235 4.97759 4.98058 5.02482 5.08299 5.10781 5.14509 5.18512 5.23790 5.26112 5.33541 5.39030 5.44871 5.51539 5.70458 5.98458 6.20191 6.27792 6.61426 6.88510 7.33402 8.11793 8.33623 9.28579 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.023360 B = 0.001992 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.338270 B =14053.207495 C =14482.609178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.128 3.872 4 H 0.076 0.924 5 C -0.119 4.119 6 C -0.127 4.127 7 C 0.084 3.916 8 N -0.586 5.586 9 C 0.517 3.483 10 O -0.543 6.543 11 C 0.504 3.496 12 O -0.538 6.538 13 N -0.686 5.686 14 C 0.137 3.863 15 C -0.099 4.099 16 C -0.157 4.157 17 C 0.143 3.857 18 N -0.729 5.729 19 C -0.244 4.244 20 H 0.078 0.922 21 C -0.080 4.080 22 N -0.971 5.971 23 Si 0.973 3.027 24 H -0.276 1.276 25 H -0.297 1.297 26 H -0.279 1.279 27 C -0.131 4.131 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.106 0.894 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.418 0.582 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.118 0.882 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.079 0.921 46 H 0.373 0.627 47 H 0.250 0.750 48 H 0.081 0.919 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.865 15.225 8.769 32.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.026 3.974 4 H 0.094 0.906 5 C -0.156 4.156 6 C -0.164 4.164 7 C -0.037 4.037 8 N -0.319 5.319 9 C 0.299 3.701 10 O -0.421 6.421 11 C 0.285 3.715 12 O -0.416 6.416 13 N -0.338 5.338 14 C 0.014 3.986 15 C -0.118 4.118 16 C -0.198 4.198 17 C 0.033 3.967 18 N -0.366 5.366 19 C -0.376 4.376 20 H 0.095 0.905 21 C -0.272 4.272 22 N -0.621 5.621 23 Si 0.802 3.198 24 H -0.202 1.202 25 H -0.223 1.223 26 H -0.205 1.205 27 C -0.171 4.171 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.124 0.876 34 H 0.108 0.892 35 H 0.126 0.874 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.255 0.745 40 H 0.100 0.900 41 H 0.078 0.922 42 H 0.136 0.864 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.097 0.903 46 H 0.205 0.795 47 H 0.059 0.941 48 H 0.100 0.900 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -27.656 15.161 8.712 32.720 hybrid contribution 0.902 -1.315 -0.478 1.665 sum -26.753 13.846 8.234 31.229 Atomic orbital electron populations 1.21684 0.93095 1.02536 1.02672 1.21880 0.97926 0.95693 1.01900 1.22030 0.77852 0.97284 1.00265 0.90553 1.22824 0.99124 0.99388 0.94293 1.22898 0.92694 0.97721 1.03125 1.22869 0.98544 0.96925 0.85395 1.48534 1.08461 1.56536 1.18403 1.19824 0.87821 0.80075 0.82341 1.90738 1.71274 1.42021 1.38101 1.20166 0.88174 0.80140 0.83060 1.90692 1.71359 1.42150 1.37375 1.45814 1.08720 1.56192 1.23052 1.21472 0.77547 1.01473 0.98109 1.22495 0.96398 0.95456 0.97490 1.23794 0.99697 0.95634 1.00666 1.21972 0.86479 0.91340 0.96860 1.42601 1.32515 1.33957 1.27538 1.19687 1.08291 1.05424 1.04160 0.90459 1.25595 0.99430 1.03019 0.99121 1.69811 1.23690 1.43907 1.24740 0.85212 0.77220 0.79399 0.77940 1.20241 1.22336 1.20526 1.23298 0.94532 0.97605 1.01617 0.90511 0.92707 0.92300 0.93257 0.91846 0.87581 0.89182 0.87385 0.90096 0.91006 0.89068 0.74475 0.90048 0.92157 0.86364 0.92317 0.91889 0.90289 0.79533 0.94086 0.90037 0.90918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.83 71.98 0.71 -0.82 16 2 C -0.14 -2.15 5.41 30.60 0.17 -1.98 16 3 C 0.13 1.88 2.91 45.34 0.13 2.02 16 4 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 5 C -0.12 -0.90 5.57 31.88 0.18 -0.72 16 6 C -0.13 -1.08 7.11 32.09 0.23 -0.85 16 7 C 0.08 1.35 6.22 86.86 0.54 1.89 16 8 N -0.59 -11.62 3.07 -789.61 -2.42 -14.04 16 9 C 0.52 12.91 7.73 87.27 0.67 13.58 16 10 O -0.54 -15.48 15.27 -3.26 -0.05 -15.53 16 11 C 0.50 13.06 7.86 87.27 0.69 13.74 16 12 O -0.54 -15.50 13.71 -3.25 -0.04 -15.55 16 13 N -0.69 -16.18 5.55 -464.40 -2.58 -18.75 16 14 C 0.14 3.32 5.50 86.38 0.47 3.79 16 15 C -0.10 -2.45 3.75 -10.26 -0.04 -2.49 16 16 C -0.16 -5.11 7.45 31.18 0.23 -4.88 16 17 C 0.14 5.42 4.48 45.57 0.20 5.63 16 18 N -0.73 -36.77 5.41 -320.18 -1.73 -38.50 16 19 C -0.24 -13.58 9.97 84.03 0.84 -12.74 16 20 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 21 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 22 N -0.97 -60.08 13.06 21.65 0.28 -59.80 16 23 Si 0.97 46.50 29.55 68.60 2.03 48.52 16 24 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 25 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 26 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 27 C -0.13 -3.91 7.40 31.12 0.23 -3.68 16 28 H 0.08 0.52 7.36 -2.39 -0.02 0.50 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 1.10 6.54 -2.39 -0.02 1.08 16 32 H 0.06 0.99 8.02 -2.39 -0.02 0.97 16 33 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.09 0.56 7.77 -2.38 -0.02 0.54 16 35 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.09 1.79 5.89 -2.39 -0.01 1.78 16 39 H 0.42 9.01 7.94 -92.71 -0.74 8.27 16 40 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.06 1.69 7.88 -2.39 -0.02 1.67 16 42 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.06 2.16 7.92 -2.38 -0.02 2.14 16 44 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.08 2.93 8.10 -2.39 -0.02 2.91 16 46 H 0.37 20.30 7.93 -92.71 -0.73 19.57 16 47 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 48 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 49 H 0.07 2.32 8.08 -2.39 -0.02 2.30 16 Total: -1.00 -70.32 392.72 0.69 -69.63 By element: Atomic # 1 Polarization: 36.18 SS G_CDS: -0.52 Total: 35.66 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 5.72 Total: 8.35 kcal Atomic # 7 Polarization: -124.65 SS G_CDS: -6.45 Total: -131.09 kcal Atomic # 8 Polarization: -30.98 SS G_CDS: -0.09 Total: -31.07 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.52 kcal Total: -70.32 0.69 -69.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100836519.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.139 kcal (2) G-P(sol) polarization free energy of solvation -70.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds