Wall clock time and date at job start Fri Apr 10 2020 18:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.35471 * 2 1 4 4 C 1.53994 * 110.30930 * 237.85950 * 2 1 3 5 5 N 1.47903 * 107.06140 * 242.30595 * 4 2 1 6 6 C 1.46890 * 111.00364 * 214.15890 * 5 4 2 7 7 C 1.50705 * 109.46959 * 287.39867 * 6 5 4 8 8 O 1.21291 * 119.99844 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99779 * 180.02562 * 7 6 5 10 10 C 1.37093 * 119.99649 * 179.97438 * 9 7 6 11 11 H 1.08001 * 120.00163 * 359.97438 * 10 9 7 12 12 C 1.38952 * 120.00001 * 180.02562 * 10 9 7 13 13 N 1.31409 * 120.00113 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00177 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47079 * 59.99771 * 14 12 10 16 16 H 1.48498 * 109.47188 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47184 * 299.99693 * 14 12 10 18 18 C 1.48531 * 105.81741 * 334.67500 * 5 4 2 19 19 C 1.54596 * 110.30933 * 122.14298 * 2 1 3 20 20 H 1.08997 * 110.87547 * 22.44744 * 19 2 1 21 21 C 1.53000 * 110.72567 * 259.23309 * 19 2 1 22 22 N 1.46499 * 109.46981 * 180.02562 * 21 19 2 23 23 C 1.34777 * 119.99553 * 180.02562 * 22 21 19 24 24 O 1.21278 * 120.00088 * 359.97438 * 23 22 21 25 25 C 1.50703 * 119.99745 * 179.97438 * 23 22 21 26 26 C 1.53781 * 113.61417 * 179.97438 * 25 23 22 27 27 C 1.53786 * 87.17350 * 139.93966 * 26 25 23 28 28 C 1.53782 * 113.61283 * 277.49692 * 25 23 22 29 29 H 1.08993 * 109.47348 * 297.85533 * 1 2 3 30 30 H 1.09001 * 109.47373 * 57.85568 * 1 2 3 31 31 H 1.09003 * 109.47376 * 177.85658 * 1 2 3 32 32 H 1.09005 * 109.91550 * 122.95815 * 4 2 1 33 33 H 1.08997 * 109.92148 * 1.66543 * 4 2 1 34 34 H 1.09005 * 109.47446 * 47.39474 * 6 5 4 35 35 H 1.08999 * 109.47251 * 167.39760 * 6 5 4 36 36 H 0.96996 * 120.00351 * 359.97438 * 9 7 6 37 37 H 0.97002 * 120.00736 * 180.02562 * 13 12 10 38 38 H 1.09003 * 110.66745 * 280.76751 * 18 5 4 39 39 H 1.09003 * 110.67044 * 157.64073 * 18 5 4 40 40 H 1.08994 * 109.47005 * 60.04536 * 21 19 2 41 41 H 1.09004 * 109.46932 * 300.04402 * 21 19 2 42 42 H 0.96993 * 120.00243 * 359.97438 * 22 21 19 43 43 H 1.08997 * 112.91128 * 48.74724 * 25 23 22 44 44 H 1.09002 * 113.61445 * 254.52965 * 26 25 23 45 45 H 1.09002 * 113.61408 * 25.34696 * 26 25 23 46 46 H 1.08993 * 113.61491 * 89.15923 * 27 26 25 47 47 H 1.09000 * 113.61138 * 220.06261 * 27 26 25 48 48 H 1.08997 * 113.61668 * 334.56418 * 28 25 23 49 49 H 1.08998 * 113.61674 * 105.38927 * 28 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9091 1.0219 0.0000 4 6 2.0645 -0.7683 -1.2229 5 7 2.8313 -1.9236 -0.7083 6 6 3.9751 -2.2261 -1.5789 7 6 3.4809 -2.8475 -2.8598 8 8 2.2927 -3.0215 -3.0304 9 7 4.3593 -3.2106 -3.8154 10 6 3.9097 -3.7763 -4.9804 11 1 2.8517 -3.9314 -5.1324 12 6 4.8153 -4.1512 -5.9654 13 7 6.1026 -3.9631 -5.7804 14 14 4.2028 -4.9227 -7.5526 15 1 3.2922 -3.9753 -8.2443 16 1 5.3591 -5.2289 -8.4325 17 1 3.4701 -6.1767 -7.2429 18 6 3.2855 -1.5348 0.6514 19 6 2.0665 -0.7714 1.2276 20 1 1.3186 -1.4682 1.6058 21 6 2.5052 0.1982 2.3270 22 7 3.0085 -0.5604 3.4747 23 6 3.4527 0.0888 4.5691 24 8 3.4361 1.3010 4.6035 25 6 3.9699 -0.6915 5.7501 26 6 4.4389 0.1945 6.9162 27 6 3.7886 -0.8325 7.8581 28 6 2.8606 -1.2006 6.6856 29 1 -0.3634 0.4801 0.9085 30 1 -0.3634 0.5468 -0.8701 31 1 -0.3634 -1.0270 -0.0384 32 1 2.7162 -0.1225 -1.8114 33 1 1.2327 -1.1175 -1.8347 34 1 4.5128 -1.3054 -1.8056 35 1 4.6437 -2.9219 -1.0719 36 1 5.3095 -3.0717 -3.6788 37 1 6.7348 -4.2245 -6.4681 38 1 4.1563 -0.8818 0.5941 39 1 3.5046 -2.4183 1.2511 40 1 1.6543 0.8044 2.6374 41 1 3.2939 0.8469 1.9458 42 1 3.0214 -1.5299 3.4474 43 1 4.6902 -1.4596 5.4686 44 1 5.5231 0.2508 7.0132 45 1 3.9604 1.1736 6.9405 46 1 4.4590 -1.6395 8.1539 47 1 3.2684 -0.3818 8.7033 48 1 1.9494 -0.6036 6.6477 49 1 2.6700 -2.2700 6.5955 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101658333.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:25 Heat of formation + Delta-G solvation = -83.439114 kcal Electronic energy + Delta-G solvation = -27189.960796 eV Core-core repulsion = 23343.948105 eV Total energy + Delta-G solvation = -3846.012691 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.34273 -40.70946 -39.53870 -38.32144 -36.18636 -35.76635 -34.24847 -33.22430 -31.38633 -29.31127 -27.92883 -26.94056 -26.52684 -26.29902 -24.36335 -22.32463 -21.72316 -21.28331 -20.76670 -20.16565 -19.81052 -18.39838 -17.70358 -17.39598 -16.68682 -16.62572 -16.50964 -16.36768 -15.87514 -15.63321 -15.47974 -15.09935 -14.83244 -14.65887 -14.42828 -13.83144 -13.72044 -13.63820 -13.51130 -13.43980 -13.37024 -12.98479 -12.95329 -12.79751 -12.46548 -12.41513 -12.25610 -12.12442 -12.11165 -11.77329 -11.65874 -11.55847 -11.47748 -11.41410 -11.26044 -10.66380 -10.32716 -10.08024 -10.00594 -9.30479 -8.46112 -5.94787 1.39501 1.41020 1.52028 1.63751 2.06479 2.23267 2.28465 2.80356 3.20144 3.36907 3.54411 3.56974 3.62057 3.70664 3.81742 3.88227 3.94704 4.15470 4.24798 4.28919 4.30109 4.39709 4.41277 4.51746 4.59233 4.63681 4.67285 4.72385 4.79758 4.82319 4.87418 4.89305 5.03112 5.06396 5.11140 5.11481 5.17918 5.21367 5.24143 5.40543 5.40805 5.46865 5.56205 5.86522 5.98529 6.10179 6.58438 6.61401 7.13492 7.27864 7.57173 8.13385 8.71115 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.021833 B = 0.002096 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.179068 B =13356.653935 C =14136.705168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.088 4.088 3 H 0.086 0.914 4 C 0.048 3.952 5 N -0.511 5.511 6 C 0.049 3.951 7 C 0.441 3.559 8 O -0.615 6.615 9 N -0.576 5.576 10 C -0.332 4.332 11 H 0.078 0.922 12 C -0.015 4.015 13 N -0.921 5.921 14 Si 0.993 3.007 15 H -0.273 1.273 16 H -0.270 1.270 17 H -0.271 1.271 18 C 0.039 3.961 19 C -0.083 4.083 20 H 0.100 0.900 21 C 0.138 3.862 22 N -0.716 5.716 23 C 0.517 3.483 24 O -0.590 6.590 25 C -0.138 4.138 26 C -0.128 4.128 27 C -0.134 4.134 28 C -0.119 4.119 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.030 0.970 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.111 0.889 36 H 0.395 0.605 37 H 0.277 0.723 38 H 0.051 0.949 39 H 0.099 0.901 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.415 0.585 43 H 0.137 0.863 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.100 0.900 47 H 0.073 0.927 48 H 0.072 0.928 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.804 6.022 24.973 25.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.108 4.108 3 H 0.105 0.895 4 C -0.080 4.080 5 N -0.235 5.235 6 C -0.083 4.083 7 C 0.229 3.771 8 O -0.501 6.501 9 N -0.214 5.214 10 C -0.462 4.462 11 H 0.096 0.904 12 C -0.214 4.214 13 N -0.562 5.562 14 Si 0.816 3.184 15 H -0.198 1.198 16 H -0.195 1.195 17 H -0.197 1.197 18 C -0.088 4.088 19 C -0.102 4.102 20 H 0.118 0.882 21 C 0.013 3.987 22 N -0.367 5.367 23 C 0.305 3.695 24 O -0.470 6.470 25 C -0.159 4.159 26 C -0.166 4.166 27 C -0.171 4.171 28 C -0.157 4.157 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.129 0.871 36 H 0.229 0.771 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.117 0.883 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.252 0.748 43 H 0.155 0.845 44 H 0.095 0.905 45 H 0.088 0.912 46 H 0.119 0.881 47 H 0.092 0.908 48 H 0.091 0.909 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.759 6.241 24.741 25.791 hybrid contribution 0.895 0.124 -1.449 1.708 sum -2.864 6.365 23.291 24.314 Atomic orbital electron populations 1.21780 0.93405 1.01934 1.02303 1.21954 0.97260 0.98963 0.92586 0.89531 1.22889 0.97850 0.90237 0.97059 1.64378 1.19753 1.37122 1.02258 1.21930 0.93450 1.00825 0.92046 1.20789 0.86485 0.83483 0.86370 1.90480 1.17906 1.60352 1.81331 1.41934 1.09091 1.55034 1.15340 1.19607 0.94139 1.38051 0.94364 0.90384 1.26039 0.95074 0.97848 1.02443 1.69664 1.01687 1.48171 1.36704 0.84992 0.77764 0.78558 0.77041 1.19804 1.19484 1.19669 1.23431 0.96522 0.99795 0.89086 1.22265 0.97506 0.96718 0.93734 0.88223 1.21232 0.98752 0.93661 0.85018 1.45976 1.64129 1.11270 1.15357 1.21106 0.76379 0.87836 0.84160 1.90673 1.57415 1.16322 1.82600 1.22940 1.01366 1.00139 0.91426 1.22815 1.01427 0.98027 0.94357 1.22872 0.98662 0.99012 0.96545 1.22852 0.95944 1.02489 0.94431 0.90863 0.92718 0.93056 0.95191 0.92319 0.91673 0.87099 0.77100 0.91334 0.93036 0.88302 0.91467 0.92397 0.74772 0.84492 0.90539 0.91178 0.88107 0.90792 0.90926 0.88575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 8.89 71.98 0.64 -2.12 16 2 C -0.09 -1.92 3.17 -9.92 -0.03 -1.95 16 3 H 0.09 1.71 7.85 -2.39 -0.02 1.69 16 4 C 0.05 1.49 5.53 86.45 0.48 1.96 16 5 N -0.51 -16.04 4.91 -887.57 -4.36 -20.39 16 6 C 0.05 1.70 5.27 85.56 0.45 2.15 16 7 C 0.44 21.24 7.61 87.66 0.67 21.91 16 8 O -0.62 -34.34 14.87 -3.06 -0.05 -34.39 16 9 N -0.58 -29.88 5.29 -306.98 -1.62 -31.50 16 10 C -0.33 -19.01 9.68 84.04 0.81 -18.20 16 11 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 12 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 13 N -0.92 -50.00 13.05 21.66 0.28 -49.72 16 14 Si 0.99 43.20 29.55 68.60 2.03 45.23 16 15 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 16 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 17 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 18 C 0.04 0.82 5.66 86.65 0.49 1.31 16 19 C -0.08 -1.50 2.67 -9.59 -0.03 -1.52 16 20 H 0.10 1.72 7.87 -2.39 -0.02 1.70 16 21 C 0.14 2.37 4.99 86.38 0.43 2.80 16 22 N -0.72 -10.50 5.40 -463.06 -2.50 -13.00 16 23 C 0.52 9.70 7.35 87.66 0.64 10.35 16 24 O -0.59 -16.55 15.90 -3.02 -0.05 -16.60 16 25 C -0.14 -1.65 4.15 -11.01 -0.05 -1.70 16 26 C -0.13 -1.72 7.40 31.12 0.23 -1.49 16 27 C -0.13 -1.15 8.10 31.20 0.25 -0.90 16 28 C -0.12 -1.11 7.64 31.20 0.24 -0.87 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.03 0.97 7.52 -2.38 -0.02 0.95 16 33 H 0.06 2.23 7.07 -2.39 -0.02 2.21 16 34 H 0.07 2.07 7.73 -2.38 -0.02 2.05 16 35 H 0.11 3.33 8.08 -2.39 -0.02 3.31 16 36 H 0.40 19.46 7.90 -92.71 -0.73 18.73 16 37 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 38 H 0.05 1.05 7.90 -2.39 -0.02 1.03 16 39 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.06 1.15 8.10 -2.39 -0.02 1.13 16 42 H 0.42 3.95 8.33 -92.71 -0.77 3.17 16 43 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.07 1.29 7.43 -2.39 -0.02 1.27 16 46 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.07 0.86 8.09 -2.39 -0.02 0.84 16 49 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -74.15 394.65 -1.12 -75.27 By element: Atomic # 1 Polarization: 34.22 SS G_CDS: -0.55 Total: 33.67 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: 5.70 Total: 11.43 kcal Atomic # 7 Polarization: -106.41 SS G_CDS: -8.20 Total: -114.61 kcal Atomic # 8 Polarization: -50.89 SS G_CDS: -0.09 Total: -50.99 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -74.15 -1.12 -75.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101658333.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.168 kcal (2) G-P(sol) polarization free energy of solvation -74.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds