Wall clock time and date at job start Fri Apr 10 2020 18:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.64104 * 2 1 4 4 C 1.54327 * 110.72340 * 236.85492 * 2 1 3 5 5 N 1.47025 * 107.27105 * 219.44464 * 4 2 1 6 6 C 1.34773 * 125.64725 * 178.90523 * 5 4 2 7 7 O 1.21272 * 120.00052 * 180.02562 * 6 5 4 8 8 C 1.50701 * 120.00080 * 0.02562 * 6 5 4 9 9 H 1.09009 * 110.85685 * 300.70477 * 8 6 5 10 10 C 1.54629 * 110.96970 * 64.49215 * 8 6 5 11 11 C 1.51275 * 104.19571 * 142.91667 * 10 8 6 12 12 O 1.21284 * 124.94083 * 163.71252 * 11 10 8 13 13 N 1.34418 * 110.11730 * 343.74974 * 11 10 8 14 14 C 1.46500 * 124.35155 * 179.58802 * 13 11 10 15 15 C 1.46825 * 111.31448 * 359.62240 * 13 11 10 16 16 C 1.47421 * 108.70178 * 358.93715 * 5 4 2 17 17 C 1.54904 * 104.83620 * 24.13268 * 16 5 4 18 18 H 1.08999 * 111.00765 * 81.06058 * 17 16 5 19 19 C 1.53004 * 111.00762 * 204.91620 * 17 16 5 20 20 C 1.52997 * 109.46717 * 287.19252 * 19 17 16 21 21 N 1.46502 * 109.47113 * 179.97438 * 20 19 17 22 22 C 1.36941 * 120.00258 * 180.02562 * 21 20 19 23 23 H 1.08006 * 119.99885 * 359.97438 * 22 21 20 24 24 C 1.38806 * 120.00328 * 179.97438 * 22 21 20 25 25 N 1.31622 * 119.99968 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00363 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46618 * 60.00002 * 26 24 22 28 28 H 1.48499 * 109.47272 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.46858 * 300.00616 * 26 24 22 30 30 H 1.09002 * 109.47153 * 181.69040 * 1 2 3 31 31 H 1.09001 * 109.46832 * 61.69231 * 1 2 3 32 32 H 1.09004 * 109.47261 * 301.69213 * 1 2 3 33 33 H 1.08999 * 109.87685 * 338.86158 * 4 2 1 34 34 H 1.08997 * 109.87962 * 100.02687 * 4 2 1 35 35 H 1.08998 * 110.48604 * 261.59615 * 10 8 6 36 36 H 1.09002 * 110.48838 * 24.10338 * 10 8 6 37 37 H 1.09004 * 109.47013 * 359.97213 * 14 13 11 38 38 H 1.09000 * 109.47259 * 119.97332 * 14 13 11 39 39 H 1.08999 * 109.47251 * 239.97946 * 14 13 11 40 40 H 1.08996 * 110.23442 * 257.98416 * 15 13 11 41 41 H 1.08995 * 110.28040 * 135.96709 * 15 13 11 42 42 H 1.09007 * 110.36440 * 142.96663 * 16 5 4 43 43 H 1.08998 * 110.37175 * 265.28632 * 16 5 4 44 44 H 1.08998 * 109.47117 * 47.19020 * 19 17 16 45 45 H 1.08996 * 109.47296 * 167.19164 * 19 17 16 46 46 H 1.08997 * 109.47647 * 299.99626 * 20 19 17 47 47 H 1.09005 * 109.47140 * 59.99909 * 20 19 17 48 48 H 0.96997 * 119.99634 * 359.97438 * 21 20 19 49 49 H 0.96998 * 120.00558 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0761 -0.7892 -1.2086 5 7 3.2446 -1.5495 -0.7415 6 6 3.9916 -2.3821 -1.4932 7 8 4.9371 -2.9601 -1.0006 8 6 3.6519 -2.5949 -2.9459 9 1 2.6412 -2.9886 -3.0546 10 6 3.8260 -1.2871 -3.7523 11 6 4.3768 -1.7435 -5.0852 12 8 4.3930 -1.0738 -6.0962 13 7 4.8449 -2.9997 -4.9863 14 6 5.4397 -3.7500 -6.0951 15 6 4.6830 -3.5239 -3.6244 16 6 3.4633 -1.2508 0.6855 17 6 2.0790 -0.7974 1.2125 18 1 1.4452 -1.6559 1.4348 19 6 2.2277 0.1041 2.4398 20 6 2.6507 -0.7396 3.6440 21 7 2.7937 0.1236 4.8190 22 6 3.1679 -0.4136 6.0218 23 1 3.3572 -1.4737 6.1043 24 6 3.3040 0.4044 7.1350 25 7 3.0728 1.6963 7.0346 26 14 3.8137 -0.3284 8.7759 27 1 5.1451 -0.9716 8.6384 28 1 3.8860 0.7471 9.7973 29 1 2.8146 -1.3435 9.1964 30 1 -0.3633 -1.0272 0.0303 31 1 -0.3633 0.4873 -0.9048 32 1 -0.3634 0.5399 0.8744 33 1 1.3130 -1.4732 -1.5799 34 1 2.3741 -0.0991 -1.9978 35 1 2.8648 -0.7909 -3.8864 36 1 4.5311 -0.6222 -3.2533 37 1 5.4384 -3.1326 -6.9935 38 1 6.4646 -4.0211 -5.8420 39 1 4.8584 -4.6543 -6.2750 40 1 5.6326 -3.4868 -3.0908 41 1 4.3065 -4.5463 -3.6554 42 1 3.7960 -2.1446 1.2135 43 1 4.1932 -0.4491 0.7978 44 1 2.9853 0.8628 2.2436 45 1 1.2748 0.5886 2.6524 46 1 1.8932 -1.4983 3.8402 47 1 3.6037 -1.2242 3.4314 48 1 2.6241 1.0757 4.7448 49 1 3.1682 2.2680 7.8124 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104261429.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:45 Heat of formation + Delta-G solvation = -61.433525 kcal Electronic energy + Delta-G solvation = -27519.770858 eV Core-core repulsion = 23674.712401 eV Total energy + Delta-G solvation = -3845.058457 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.29388 -39.99901 -38.30179 -36.57399 -35.21628 -33.76173 -32.99848 -32.10230 -30.25576 -28.29526 -27.82563 -26.71566 -26.65525 -24.46267 -23.13259 -22.21198 -20.78188 -20.22474 -20.10673 -19.38242 -17.88399 -17.14437 -17.13011 -16.47281 -16.08854 -15.95742 -15.19656 -14.79250 -14.72707 -14.44036 -14.21091 -14.01457 -13.91658 -13.60363 -13.28055 -13.24683 -13.04480 -12.98833 -12.87119 -12.67829 -12.58277 -12.39832 -11.95500 -11.84897 -11.70694 -11.45384 -11.19291 -11.06986 -10.83132 -10.68912 -10.52821 -10.41282 -10.30088 -10.00566 -9.98954 -9.66576 -9.16722 -8.88006 -8.85667 -6.91611 -5.75853 -3.04521 2.13954 2.26870 2.44552 2.73824 3.45013 3.49125 3.50315 3.71092 3.83791 4.10707 4.27032 4.39608 4.43181 4.56744 4.64221 4.68843 4.84159 4.89524 4.98267 5.03422 5.08581 5.17649 5.21643 5.26746 5.27224 5.30573 5.40521 5.45688 5.49959 5.57740 5.69218 5.71676 5.81626 5.90684 5.95188 5.99514 6.01682 6.09835 6.24568 6.35397 6.36501 6.61366 6.82871 6.86733 7.23732 7.70421 7.71343 7.83272 8.43373 9.54225 10.12379 10.46698 11.47030 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.022392 B = 0.002191 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.142494 B =12775.078426 C =13560.276440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.101 4.101 3 H 0.089 0.911 4 C 0.099 3.901 5 N -0.613 5.613 6 C 0.539 3.461 7 O -0.533 6.533 8 C -0.120 4.120 9 H 0.118 0.882 10 C -0.145 4.145 11 C 0.520 3.480 12 O -0.531 6.531 13 N -0.624 5.624 14 C 0.093 3.907 15 C 0.117 3.883 16 C 0.109 3.891 17 C -0.090 4.090 18 H 0.086 0.914 19 C -0.114 4.114 20 C 0.152 3.848 21 N -0.734 5.734 22 C -0.239 4.239 23 H 0.069 0.931 24 C -0.015 4.015 25 N -0.935 5.935 26 Si 0.908 3.092 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.017 0.983 47 H 0.018 0.982 48 H 0.383 0.617 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.090 -8.644 -26.304 27.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 H 0.107 0.893 4 C -0.024 4.024 5 N -0.346 5.346 6 C 0.326 3.674 7 O -0.409 6.409 8 C -0.142 4.142 9 H 0.136 0.864 10 C -0.185 4.185 11 C 0.308 3.692 12 O -0.407 6.407 13 N -0.358 5.358 14 C -0.049 4.049 15 C -0.006 4.006 16 C -0.012 4.012 17 C -0.109 4.109 18 H 0.105 0.895 19 C -0.152 4.152 20 C 0.024 3.976 21 N -0.378 5.378 22 C -0.371 4.371 23 H 0.087 0.913 24 C -0.211 4.211 25 N -0.583 5.583 26 Si 0.739 3.261 27 H -0.212 1.212 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.102 0.898 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.112 0.888 41 H 0.105 0.895 42 H 0.101 0.899 43 H 0.092 0.908 44 H 0.084 0.916 45 H 0.088 0.912 46 H 0.035 0.965 47 H 0.036 0.964 48 H 0.217 0.783 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.427 -8.822 -26.565 28.096 hybrid contribution 0.171 -0.114 1.011 1.032 sum -2.256 -8.937 -25.554 27.165 Atomic orbital electron populations 1.21755 0.93584 1.02230 1.02355 1.22296 0.96553 0.99673 0.93486 0.89268 1.22300 0.87540 0.94827 0.97732 1.48459 1.30090 1.44119 1.11957 1.19631 0.82120 0.78553 0.87096 1.90750 1.28547 1.48188 1.73440 1.22194 1.02234 0.97277 0.92487 0.86397 1.22373 1.04718 0.97445 0.93958 1.20750 0.77311 0.81320 0.89850 1.90743 1.57539 1.58263 1.34204 1.48205 1.61090 1.15363 1.11173 1.21591 0.97936 0.96310 0.89048 1.22005 1.00196 0.97440 0.80958 1.22463 0.97758 1.01693 0.79321 1.22438 0.95233 0.98825 0.94426 0.89529 1.21683 1.02187 0.98006 0.93354 1.20673 0.97239 0.93154 0.86513 1.42355 1.83033 1.07245 1.05183 1.19192 1.38094 0.92960 0.86804 0.91263 1.24747 1.02668 0.95558 0.98130 1.69647 1.55914 1.03078 1.29694 0.86257 0.78449 0.77704 0.83728 1.21244 1.21685 1.21278 0.92414 0.92483 0.91516 0.91109 0.91111 0.86985 0.87175 0.89805 0.91779 0.91836 0.88813 0.89507 0.89862 0.90786 0.91590 0.91233 0.96488 0.96367 0.78326 0.93484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.13 37.16 0.34 -0.68 16 2 C -0.10 -0.83 3.01 -88.78 -0.27 -1.10 16 3 H 0.09 0.75 8.04 -51.93 -0.42 0.33 16 4 C 0.10 0.70 5.70 -3.06 -0.02 0.68 16 5 N -0.61 -6.01 3.33 -170.52 -0.57 -6.57 16 6 C 0.54 5.60 7.12 -10.99 -0.08 5.52 16 7 O -0.53 -7.61 15.79 5.56 0.09 -7.52 16 8 C -0.12 -0.83 2.97 -90.14 -0.27 -1.10 16 9 H 0.12 0.57 8.14 -51.92 -0.42 0.15 16 10 C -0.14 -1.03 5.17 -26.74 -0.14 -1.17 16 11 C 0.52 5.15 8.02 -10.86 -0.09 5.07 16 12 O -0.53 -7.25 17.35 5.55 0.10 -7.15 16 13 N -0.62 -5.01 3.33 -180.25 -0.60 -5.61 16 14 C 0.09 0.56 11.14 59.85 0.67 1.23 16 15 C 0.12 0.84 6.69 -3.09 -0.02 0.81 16 16 C 0.11 1.29 5.86 -2.53 -0.01 1.28 16 17 C -0.09 -0.98 2.45 -88.47 -0.22 -1.20 16 18 H 0.09 0.96 8.04 -51.93 -0.42 0.54 16 19 C -0.11 -1.64 4.84 -26.73 -0.13 -1.77 16 20 C 0.15 2.94 6.16 -4.04 -0.02 2.91 16 21 N -0.73 -18.53 5.60 -59.91 -0.34 -18.86 16 22 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 23 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 24 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 25 N -0.93 -28.31 13.06 55.49 0.72 -27.59 16 26 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 29 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 30 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.40 7.82 -51.93 -0.41 -0.01 16 34 H 0.07 0.40 6.50 -51.93 -0.34 0.06 16 35 H 0.11 0.60 7.27 -51.93 -0.38 0.22 16 36 H 0.11 0.83 7.89 -51.93 -0.41 0.42 16 37 H 0.08 0.58 7.53 -51.93 -0.39 0.19 16 38 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.09 0.82 7.01 -51.93 -0.36 0.45 16 41 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.08 1.13 8.04 -51.93 -0.42 0.71 16 43 H 0.07 0.93 7.91 -51.93 -0.41 0.52 16 44 H 0.07 0.97 7.96 -51.93 -0.41 0.56 16 45 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.02 0.36 7.75 -51.93 -0.40 -0.04 16 48 H 0.38 10.09 7.67 -40.82 -0.31 9.78 16 49 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 391.93 15.07 5.91 5.91 Total: -1.00 -35.39 391.93 -8.64 -44.03 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -8.43 Total: 2.82 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -0.50 Total: 3.05 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: -0.78 Total: -58.64 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: 0.18 Total: -14.67 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.39 -8.64 -44.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104261429.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.403 kcal (2) G-P(sol) polarization free energy of solvation -35.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds