Wall clock time and date at job start Fri Apr 10 2020 18:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.64104 * 2 1 4 4 C 1.54327 * 110.72340 * 236.85492 * 2 1 3 5 5 N 1.47025 * 107.27105 * 219.44464 * 4 2 1 6 6 C 1.34773 * 125.64725 * 178.90523 * 5 4 2 7 7 O 1.21272 * 120.00052 * 180.02562 * 6 5 4 8 8 C 1.50701 * 120.00080 * 0.02562 * 6 5 4 9 9 H 1.09009 * 110.85685 * 300.70477 * 8 6 5 10 10 C 1.54629 * 110.96970 * 64.49215 * 8 6 5 11 11 C 1.51275 * 104.19571 * 142.91667 * 10 8 6 12 12 O 1.21284 * 124.94083 * 163.71252 * 11 10 8 13 13 N 1.34418 * 110.11730 * 343.74974 * 11 10 8 14 14 C 1.46500 * 124.35155 * 179.58802 * 13 11 10 15 15 C 1.46825 * 111.31448 * 359.62240 * 13 11 10 16 16 C 1.47421 * 108.70178 * 358.93715 * 5 4 2 17 17 C 1.54904 * 104.83620 * 24.13268 * 16 5 4 18 18 H 1.08999 * 111.00765 * 81.06058 * 17 16 5 19 19 C 1.53004 * 111.00762 * 204.91620 * 17 16 5 20 20 C 1.52997 * 109.46717 * 287.19252 * 19 17 16 21 21 N 1.46502 * 109.47113 * 179.97438 * 20 19 17 22 22 C 1.36941 * 120.00258 * 180.02562 * 21 20 19 23 23 H 1.08006 * 119.99885 * 359.97438 * 22 21 20 24 24 C 1.38806 * 120.00328 * 179.97438 * 22 21 20 25 25 N 1.31622 * 119.99968 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00363 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46618 * 60.00002 * 26 24 22 28 28 H 1.48499 * 109.47272 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.46858 * 300.00616 * 26 24 22 30 30 H 1.09002 * 109.47153 * 181.69040 * 1 2 3 31 31 H 1.09001 * 109.46832 * 61.69231 * 1 2 3 32 32 H 1.09004 * 109.47261 * 301.69213 * 1 2 3 33 33 H 1.08999 * 109.87685 * 338.86158 * 4 2 1 34 34 H 1.08997 * 109.87962 * 100.02687 * 4 2 1 35 35 H 1.08998 * 110.48604 * 261.59615 * 10 8 6 36 36 H 1.09002 * 110.48838 * 24.10338 * 10 8 6 37 37 H 1.09004 * 109.47013 * 359.97213 * 14 13 11 38 38 H 1.09000 * 109.47259 * 119.97332 * 14 13 11 39 39 H 1.08999 * 109.47251 * 239.97946 * 14 13 11 40 40 H 1.08996 * 110.23442 * 257.98416 * 15 13 11 41 41 H 1.08995 * 110.28040 * 135.96709 * 15 13 11 42 42 H 1.09007 * 110.36440 * 142.96663 * 16 5 4 43 43 H 1.08998 * 110.37175 * 265.28632 * 16 5 4 44 44 H 1.08998 * 109.47117 * 47.19020 * 19 17 16 45 45 H 1.08996 * 109.47296 * 167.19164 * 19 17 16 46 46 H 1.08997 * 109.47647 * 299.99626 * 20 19 17 47 47 H 1.09005 * 109.47140 * 59.99909 * 20 19 17 48 48 H 0.96997 * 119.99634 * 359.97438 * 21 20 19 49 49 H 0.96998 * 120.00558 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0761 -0.7892 -1.2086 5 7 3.2446 -1.5495 -0.7415 6 6 3.9916 -2.3821 -1.4932 7 8 4.9371 -2.9601 -1.0006 8 6 3.6519 -2.5949 -2.9459 9 1 2.6412 -2.9886 -3.0546 10 6 3.8260 -1.2871 -3.7523 11 6 4.3768 -1.7435 -5.0852 12 8 4.3930 -1.0738 -6.0962 13 7 4.8449 -2.9997 -4.9863 14 6 5.4397 -3.7500 -6.0951 15 6 4.6830 -3.5239 -3.6244 16 6 3.4633 -1.2508 0.6855 17 6 2.0790 -0.7974 1.2125 18 1 1.4452 -1.6559 1.4348 19 6 2.2277 0.1041 2.4398 20 6 2.6507 -0.7396 3.6440 21 7 2.7937 0.1236 4.8190 22 6 3.1679 -0.4136 6.0218 23 1 3.3572 -1.4737 6.1043 24 6 3.3040 0.4044 7.1350 25 7 3.0728 1.6963 7.0346 26 14 3.8137 -0.3284 8.7759 27 1 5.1451 -0.9716 8.6384 28 1 3.8860 0.7471 9.7973 29 1 2.8146 -1.3435 9.1964 30 1 -0.3633 -1.0272 0.0303 31 1 -0.3633 0.4873 -0.9048 32 1 -0.3634 0.5399 0.8744 33 1 1.3130 -1.4732 -1.5799 34 1 2.3741 -0.0991 -1.9978 35 1 2.8648 -0.7909 -3.8864 36 1 4.5311 -0.6222 -3.2533 37 1 5.4384 -3.1326 -6.9935 38 1 6.4646 -4.0211 -5.8420 39 1 4.8584 -4.6543 -6.2750 40 1 5.6326 -3.4868 -3.0908 41 1 4.3065 -4.5463 -3.6554 42 1 3.7960 -2.1446 1.2135 43 1 4.1932 -0.4491 0.7978 44 1 2.9853 0.8628 2.2436 45 1 1.2748 0.5886 2.6524 46 1 1.8932 -1.4983 3.8402 47 1 3.6037 -1.2242 3.4314 48 1 2.6241 1.0757 4.7448 49 1 3.1682 2.2680 7.8124 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104261429.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:44 Heat of formation + Delta-G solvation = -85.606026 kcal Electronic energy + Delta-G solvation = -27520.819056 eV Core-core repulsion = 23674.712401 eV Total energy + Delta-G solvation = -3846.106655 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.00851 -40.78507 -39.18949 -37.35993 -36.86758 -34.81685 -33.87084 -33.36723 -31.75148 -29.14879 -28.68312 -27.61399 -27.25944 -25.92698 -24.34634 -23.33687 -21.91534 -21.09888 -20.78912 -20.11466 -19.15500 -18.56898 -17.79592 -17.37790 -16.85173 -16.68934 -16.64482 -16.03846 -15.56123 -15.52003 -15.35300 -15.11750 -14.81243 -14.65330 -14.55050 -14.21234 -14.06969 -13.79895 -13.52818 -13.43444 -13.26891 -13.15941 -13.06887 -12.85272 -12.62695 -12.54788 -12.47844 -12.34170 -12.23866 -12.12686 -11.89258 -11.59053 -11.54698 -11.26759 -11.14005 -10.91298 -10.82469 -9.80749 -9.68343 -9.00373 -7.96030 -5.24886 1.41371 1.46500 1.49136 1.49677 1.55862 1.75943 2.07426 2.55538 3.05667 3.25890 3.37166 3.44050 3.55702 3.69210 3.79037 3.83162 4.07368 4.14377 4.28041 4.33442 4.34144 4.41203 4.48108 4.53955 4.55319 4.62404 4.64478 4.66717 4.72674 4.77864 4.82129 4.84673 4.87149 4.93651 4.95894 5.08115 5.18445 5.22963 5.32456 5.37987 5.42130 5.46334 5.49727 5.57192 5.97235 6.26912 6.48015 7.00391 7.04838 7.32811 8.09733 8.32604 9.27185 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.022392 B = 0.002191 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.142494 B =12775.078426 C =13560.276440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.094 4.094 3 H 0.089 0.911 4 C 0.097 3.903 5 N -0.611 5.611 6 C 0.536 3.464 7 O -0.580 6.580 8 C -0.105 4.105 9 H 0.152 0.848 10 C -0.137 4.137 11 C 0.512 3.488 12 O -0.576 6.576 13 N -0.621 5.621 14 C 0.087 3.913 15 C 0.117 3.883 16 C 0.109 3.891 17 C -0.081 4.081 18 H 0.090 0.910 19 C -0.099 4.099 20 C 0.149 3.851 21 N -0.748 5.748 22 C -0.249 4.249 23 H 0.072 0.928 24 C -0.077 4.077 25 N -0.968 5.968 26 Si 0.974 3.026 27 H -0.279 1.279 28 H -0.293 1.293 29 H -0.277 1.277 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.138 0.862 36 H 0.105 0.895 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.110 0.890 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.071 0.929 46 H 0.019 0.981 47 H 0.013 0.987 48 H 0.375 0.625 49 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.555 -9.745 -27.657 29.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.113 4.113 3 H 0.107 0.893 4 C -0.024 4.024 5 N -0.343 5.343 6 C 0.325 3.675 7 O -0.460 6.460 8 C -0.127 4.127 9 H 0.170 0.830 10 C -0.177 4.177 11 C 0.301 3.699 12 O -0.457 6.457 13 N -0.355 5.355 14 C -0.055 4.055 15 C -0.006 4.006 16 C -0.014 4.014 17 C -0.100 4.100 18 H 0.108 0.892 19 C -0.138 4.138 20 C 0.023 3.977 21 N -0.391 5.391 22 C -0.381 4.381 23 H 0.090 0.910 24 C -0.269 4.269 25 N -0.619 5.619 26 Si 0.802 3.198 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.203 1.203 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.117 0.883 34 H 0.111 0.889 35 H 0.156 0.844 36 H 0.123 0.877 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.128 0.872 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.090 0.910 46 H 0.037 0.963 47 H 0.031 0.969 48 H 0.206 0.794 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.912 -9.970 -27.943 29.925 hybrid contribution 0.670 0.171 1.411 1.572 sum -3.241 -9.799 -26.531 28.468 Atomic orbital electron populations 1.21744 0.92364 1.02706 1.02831 1.22268 0.97451 0.99356 0.92246 0.89284 1.22539 0.86981 0.95426 0.97494 1.48511 1.30789 1.44069 1.10926 1.20210 0.81262 0.77708 0.88287 1.90735 1.30579 1.50043 1.74612 1.22168 1.03753 0.97229 0.89518 0.83005 1.22370 1.05727 0.97466 0.92139 1.21191 0.77096 0.81526 0.90132 1.90718 1.59606 1.59421 1.35928 1.48374 1.60145 1.15079 1.11852 1.21753 0.98950 0.96685 0.88065 1.22045 0.99641 0.98744 0.80158 1.22276 0.97965 1.00190 0.80937 1.22286 0.95001 0.98669 0.94060 0.89199 1.21512 1.01799 0.97681 0.92766 1.20859 0.96973 0.93267 0.86591 1.42598 1.82881 1.07465 1.06130 1.19595 1.37128 0.93233 0.88095 0.90957 1.25588 1.03535 0.96054 1.01705 1.69800 1.57465 1.04272 1.30352 0.85209 0.78310 0.76929 0.79311 1.20560 1.21929 1.20258 0.91824 0.90391 0.92833 0.88341 0.88880 0.84406 0.87723 0.91069 0.90809 0.89539 0.90723 0.87188 0.92258 0.92056 0.92113 0.91026 0.96347 0.96886 0.79362 0.93928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.13 71.98 0.66 -0.88 16 2 C -0.09 -1.29 3.01 -9.60 -0.03 -1.31 16 3 H 0.09 1.26 8.04 -2.39 -0.02 1.24 16 4 C 0.10 1.00 5.70 86.73 0.49 1.49 16 5 N -0.61 -10.80 3.33 -811.81 -2.70 -13.50 16 6 C 0.54 10.30 7.12 87.66 0.62 10.92 16 7 O -0.58 -16.57 15.79 -3.01 -0.05 -16.62 16 8 C -0.11 -1.15 2.97 -10.48 -0.03 -1.18 16 9 H 0.15 0.71 8.14 -2.38 -0.02 0.69 16 10 C -0.14 -1.59 5.17 30.59 0.16 -1.44 16 11 C 0.51 9.42 8.02 87.90 0.71 10.13 16 12 O -0.58 -15.49 17.35 -3.04 -0.05 -15.55 16 13 N -0.62 -8.98 3.33 -842.77 -2.81 -11.79 16 14 C 0.09 0.93 11.14 127.77 1.42 2.35 16 15 C 0.12 1.43 6.69 86.82 0.58 2.01 16 16 C 0.11 2.55 5.86 86.85 0.51 3.06 16 17 C -0.08 -1.66 2.45 -9.40 -0.02 -1.68 16 18 H 0.09 1.84 8.04 -2.39 -0.02 1.82 16 19 C -0.10 -2.83 4.84 30.59 0.15 -2.69 16 20 C 0.15 5.85 6.16 86.38 0.53 6.38 16 21 N -0.75 -38.39 5.60 -343.45 -1.92 -40.31 16 22 C -0.25 -14.15 9.99 84.03 0.84 -13.31 16 23 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 24 C -0.08 -4.45 5.50 84.86 0.47 -3.99 16 25 N -0.97 -59.55 13.06 21.65 0.28 -59.26 16 26 Si 0.97 46.57 29.55 68.60 2.03 48.59 16 27 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 28 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 29 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 30 H 0.06 0.65 8.13 -2.39 -0.02 0.63 16 31 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.10 0.56 7.82 -2.39 -0.02 0.54 16 34 H 0.09 0.62 6.50 -2.39 -0.02 0.61 16 35 H 0.14 0.90 7.27 -2.39 -0.02 0.88 16 36 H 0.10 1.39 7.89 -2.39 -0.02 1.37 16 37 H 0.07 0.97 7.53 -2.38 -0.02 0.95 16 38 H 0.07 0.64 8.14 -2.39 -0.02 0.63 16 39 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.07 1.26 7.01 -2.39 -0.02 1.24 16 41 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.06 1.66 8.04 -2.38 -0.02 1.64 16 43 H 0.06 1.57 7.91 -2.39 -0.02 1.55 16 44 H 0.06 1.80 7.96 -2.39 -0.02 1.78 16 45 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.01 0.53 7.75 -2.38 -0.02 0.51 16 48 H 0.37 20.19 7.67 -92.71 -0.71 19.48 16 49 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -79.04 391.93 2.05 -76.98 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.22 Total: 21.59 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: 7.06 Total: 9.86 kcal Atomic # 7 Polarization: -117.71 SS G_CDS: -7.15 Total: -124.86 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -0.10 Total: -32.17 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.59 kcal Total: -79.04 2.05 -76.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104261429.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.624 kcal (2) G-P(sol) polarization free energy of solvation -79.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds