Wall clock time and date at job start Fri Apr 10 2020 18:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.46235 * 2 1 4 4 C 1.53040 * 109.45964 * 119.97847 * 2 1 3 5 5 C 1.53124 * 109.30855 * 179.17780 * 4 2 1 6 6 C 1.53124 * 109.15602 * 302.40251 * 5 4 2 7 7 H 1.08999 * 109.47581 * 297.65498 * 6 5 4 8 8 N 1.46506 * 109.53470 * 177.57689 * 6 5 4 9 9 C 1.34774 * 119.99848 * 85.13977 * 8 6 5 10 10 O 1.21286 * 120.00237 * 359.97438 * 9 8 6 11 11 C 1.50703 * 119.99963 * 179.97438 * 9 8 6 12 12 C 1.53006 * 115.54695 * 34.41708 * 11 9 8 13 13 C 1.52991 * 117.50242 * 248.74581 * 11 9 8 14 14 C 1.53000 * 117.49967 * 180.08311 * 11 9 8 15 15 C 1.53034 * 109.30950 * 57.59972 * 6 5 4 16 16 N 1.46844 * 109.46507 * 240.02886 * 2 1 3 17 17 C 1.46903 * 110.99849 * 54.14816 * 16 2 1 18 18 C 1.50700 * 109.47135 * 65.46960 * 17 16 2 19 19 O 1.21296 * 120.00131 * 354.36843 * 18 17 16 20 20 N 1.34775 * 119.99993 * 174.37187 * 18 17 16 21 21 C 1.37100 * 120.00018 * 179.97438 * 20 18 17 22 22 H 1.07994 * 120.00034 * 359.97438 * 21 20 18 23 23 C 1.38951 * 119.99804 * 179.97438 * 21 20 18 24 24 N 1.31416 * 120.00285 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99712 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47205 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.46473 * 120.00485 * 25 23 21 28 28 H 1.48503 * 109.47063 * 239.99994 * 25 23 21 29 29 H 1.08997 * 109.47400 * 293.63196 * 1 2 3 30 30 H 1.09002 * 109.47125 * 53.63672 * 1 2 3 31 31 H 1.09005 * 109.46979 * 173.62887 * 1 2 3 32 32 H 1.08998 * 109.50478 * 299.13194 * 4 2 1 33 33 H 1.08999 * 109.50764 * 59.21812 * 4 2 1 34 34 H 1.09003 * 109.52156 * 62.26847 * 5 4 2 35 35 H 1.09003 * 109.52378 * 182.46152 * 5 4 2 36 36 H 0.96996 * 119.99894 * 265.13876 * 8 6 5 37 37 H 1.09001 * 109.47252 * 85.58622 * 12 11 9 38 38 H 1.09001 * 109.46730 * 205.58047 * 12 11 9 39 39 H 1.08996 * 109.47416 * 325.58324 * 12 11 9 40 40 H 1.09007 * 117.49503 * 359.97438 * 13 11 9 41 41 H 1.08998 * 117.49997 * 145.01629 * 13 11 9 42 42 H 1.08999 * 117.50202 * 214.97835 * 14 11 9 43 43 H 1.09000 * 117.49701 * 359.97438 * 14 11 9 44 44 H 1.09005 * 109.46177 * 180.82574 * 15 6 5 45 45 H 1.09003 * 109.45705 * 60.85065 * 15 6 5 46 46 H 1.08994 * 109.47248 * 185.46715 * 17 16 2 47 47 H 1.08998 * 109.47009 * 305.46721 * 17 16 2 48 48 H 0.96997 * 120.00169 * 359.97438 * 20 18 17 49 49 H 0.96998 * 120.00019 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7210 1.2499 5 6 3.5709 -0.7370 1.2361 6 6 4.0547 -1.4188 -0.0468 7 1 3.7124 -2.4536 -0.0597 8 7 5.5186 -1.3872 -0.0962 9 6 6.2346 -2.3451 0.5252 10 8 5.6672 -3.2330 1.1258 11 6 7.7404 -2.3129 0.4739 12 6 8.3710 -0.9188 0.4728 13 6 8.4434 -3.4068 -0.3322 14 6 8.4960 -3.4294 1.1975 15 6 3.4865 -0.6775 -1.2590 16 7 2.0193 -0.6917 -1.1994 17 6 1.4373 -0.1103 -2.4165 18 6 1.9259 1.3059 -2.5800 19 8 2.6011 1.8185 -1.7125 20 7 1.6125 2.0029 -3.6902 21 6 2.0565 3.2915 -3.8387 22 1 2.6571 3.7481 -3.0659 23 6 1.7338 4.0099 -4.9834 24 7 1.0026 3.4544 -5.9235 25 14 2.3383 5.7659 -5.1854 26 1 3.1359 6.1549 -3.9948 27 1 3.1858 5.8607 -6.4012 28 1 1.1739 6.6776 -5.3214 29 1 -0.3634 0.4119 0.9414 30 1 -0.3633 0.6093 -0.8276 31 1 -0.3633 -1.0214 -0.1140 32 1 1.6894 -0.1983 2.1399 33 1 1.6653 -1.7446 1.2579 34 1 3.9461 0.2859 1.2682 35 1 3.9373 -1.2878 2.1025 36 1 5.9724 -0.6769 -0.5762 37 1 8.4839 -0.5702 1.4994 38 1 9.3494 -0.9631 -0.0056 39 1 7.7289 -0.2300 -0.0762 40 1 7.8167 -4.1501 -0.8251 41 1 9.3552 -3.1335 -0.8631 42 1 9.4425 -3.1709 1.6722 43 1 7.9039 -4.1869 1.7110 44 1 3.8175 -1.1697 -2.1736 45 1 3.8403 0.3534 -1.2529 46 1 1.7392 -0.7009 -3.2814 47 1 0.3503 -0.1128 -2.3365 48 1 1.0728 1.5929 -4.3840 49 1 0.7771 3.9561 -6.7225 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132054983.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:38 Heat of formation + Delta-G solvation = -49.461423 kcal Electronic energy + Delta-G solvation = -28533.971394 eV Core-core repulsion = 24689.432086 eV Total energy + Delta-G solvation = -3844.539307 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.43789 -39.53223 -37.61616 -36.66165 -34.89998 -33.98945 -32.52656 -31.35351 -31.19277 -28.81627 -27.59267 -26.30522 -24.62779 -23.43991 -22.78377 -22.69314 -21.02322 -20.00288 -19.50526 -18.91996 -17.83239 -17.18360 -16.32238 -15.95890 -15.41080 -15.19613 -14.90687 -14.68770 -14.56297 -14.23114 -13.99862 -13.96465 -13.61675 -13.39058 -13.07440 -12.92387 -12.74693 -12.51932 -12.32825 -12.19141 -11.74115 -11.72084 -11.68498 -11.48092 -11.31666 -11.14494 -10.79412 -10.67157 -10.57358 -10.46256 -10.40801 -10.31067 -10.24924 -10.07484 -9.69844 -9.51998 -9.25246 -8.95936 -8.05148 -7.44190 -6.50701 -3.92250 2.46314 3.05976 3.08463 3.20425 3.26706 3.61782 3.77206 4.09748 4.30287 4.39800 4.56961 4.61698 4.72569 4.90997 5.05437 5.12854 5.15647 5.19297 5.32333 5.35112 5.40120 5.47079 5.54131 5.64468 5.69840 5.70911 5.79682 5.81183 5.85498 5.87819 5.92122 6.02331 6.05708 6.12581 6.16463 6.18489 6.33177 6.38373 6.41380 6.48858 6.58608 6.80738 7.34444 7.45854 7.47123 7.55084 7.95880 8.23854 8.50154 9.07599 9.43983 9.94054 10.65781 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.013330 B = 0.003176 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.995069 B = 8813.353261 C =10201.807971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.062 3.938 3 H 0.083 0.917 4 C -0.104 4.104 5 C -0.126 4.126 6 C 0.152 3.848 7 H 0.089 0.911 8 N -0.717 5.717 9 C 0.551 3.449 10 O -0.543 6.543 11 C -0.167 4.167 12 C -0.115 4.115 13 C -0.150 4.150 14 C -0.145 4.145 15 C 0.033 3.967 16 N -0.504 5.504 17 C 0.038 3.962 18 C 0.407 3.593 19 O -0.595 6.595 20 N -0.556 5.556 21 C -0.302 4.302 22 H 0.103 0.897 23 C 0.024 3.976 24 N -0.897 5.897 25 Si 0.928 3.072 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.281 1.281 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.401 0.599 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.101 0.899 43 H 0.107 0.893 44 H 0.067 0.933 45 H 0.082 0.918 46 H 0.087 0.913 47 H 0.096 0.904 48 H 0.393 0.607 49 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.897 -10.440 9.628 16.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.046 4.046 3 H 0.101 0.899 4 C -0.142 4.142 5 C -0.165 4.165 6 C 0.048 3.952 7 H 0.108 0.892 8 N -0.368 5.368 9 C 0.337 3.663 10 O -0.420 6.420 11 C -0.171 4.171 12 C -0.172 4.172 13 C -0.187 4.187 14 C -0.183 4.183 15 C -0.095 4.095 16 N -0.228 5.228 17 C -0.094 4.094 18 C 0.193 3.807 19 O -0.482 6.482 20 N -0.191 5.191 21 C -0.432 4.432 22 H 0.121 0.879 23 C -0.178 4.178 24 N -0.538 5.538 25 Si 0.755 3.245 26 H -0.193 1.193 27 H -0.207 1.207 28 H -0.207 1.207 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.236 0.764 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.117 0.883 41 H 0.122 0.878 42 H 0.119 0.881 43 H 0.125 0.875 44 H 0.086 0.914 45 H 0.100 0.900 46 H 0.105 0.895 47 H 0.114 0.886 48 H 0.226 0.774 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.687 -11.142 10.467 17.583 hybrid contribution 0.339 1.931 -1.085 2.241 sum 9.026 -9.211 9.382 15.948 Atomic orbital electron populations 1.21869 0.95111 1.01721 1.01514 1.21889 0.94742 0.98818 0.89192 0.89878 1.21534 0.94488 1.01038 0.97165 1.21915 0.96340 1.00781 0.97464 1.20935 0.77996 1.01130 0.95183 0.89248 1.46000 1.07335 1.28908 1.54539 1.19425 0.87610 0.81169 0.78108 1.90680 1.72066 1.36274 1.43024 1.21515 0.91651 0.94065 1.09826 1.21363 1.00537 0.92662 1.02670 1.23105 1.01681 0.99264 0.94683 1.23023 1.01048 0.99454 0.94747 1.22451 0.88869 1.01817 0.96396 1.62349 1.06271 1.52511 1.01630 1.22126 1.00945 0.92746 0.93600 1.21080 0.86385 0.88987 0.84256 1.90393 1.43838 1.71493 1.42484 1.42072 1.46109 1.13322 1.17585 1.19748 1.30480 0.88712 1.04254 0.87932 1.25291 0.96764 1.00369 0.95379 1.69617 1.37228 1.38163 1.08792 0.85820 0.78506 0.81717 0.78416 1.19254 1.20677 1.20668 0.92638 0.92555 0.92334 0.91695 0.91588 0.91809 0.91963 0.76421 0.91579 0.91461 0.91673 0.88319 0.87813 0.88065 0.87493 0.91423 0.89984 0.89503 0.88643 0.77380 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.54 37.15 0.32 -1.74 16 2 C 0.06 0.98 2.07 -67.73 -0.14 0.84 16 3 H 0.08 1.62 5.76 -51.93 -0.30 1.32 16 4 C -0.10 -1.45 5.37 -26.65 -0.14 -1.59 16 5 C -0.13 -1.81 5.58 -26.60 -0.15 -1.96 16 6 C 0.15 2.21 2.61 -67.85 -0.18 2.03 16 7 H 0.09 1.44 7.58 -51.93 -0.39 1.04 16 8 N -0.72 -9.21 4.98 -53.72 -0.27 -9.48 16 9 C 0.55 7.41 7.36 -10.98 -0.08 7.33 16 10 O -0.54 -9.14 15.92 5.55 0.09 -9.05 16 11 C -0.17 -1.70 2.61 -155.66 -0.41 -2.10 16 12 C -0.12 -0.94 9.79 37.16 0.36 -0.57 16 13 C -0.15 -1.30 9.88 -26.70 -0.26 -1.56 16 14 C -0.15 -1.32 9.77 -26.69 -0.26 -1.58 16 15 C 0.03 0.53 4.45 -3.83 -0.02 0.51 16 16 N -0.50 -8.17 4.69 -228.13 -1.07 -9.24 16 17 C 0.04 0.64 5.47 -4.97 -0.03 0.62 16 18 C 0.41 8.90 7.18 -10.99 -0.08 8.82 16 19 O -0.59 -14.41 11.22 5.54 0.06 -14.35 16 20 N -0.56 -13.42 5.29 -10.96 -0.06 -13.48 16 21 C -0.30 -8.08 9.68 -14.93 -0.14 -8.23 16 22 H 0.10 2.89 7.16 -52.49 -0.38 2.51 16 23 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 24 N -0.90 -23.76 13.05 55.50 0.72 -23.04 16 25 Si 0.93 20.43 29.55 -169.99 -5.02 15.41 16 26 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 27 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 28 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.87 6.60 -51.93 -0.34 0.52 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.40 4.55 6.91 -40.82 -0.28 4.27 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.45 7.90 -51.93 -0.41 0.04 16 39 H 0.06 0.53 6.39 -51.93 -0.33 0.20 16 40 H 0.10 0.93 8.14 -51.92 -0.42 0.50 16 41 H 0.10 0.70 8.05 -51.93 -0.42 0.28 16 42 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.11 1.12 7.67 -51.93 -0.40 0.73 16 44 H 0.07 1.06 8.12 -51.93 -0.42 0.63 16 45 H 0.08 1.54 5.61 -51.93 -0.29 1.25 16 46 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 47 H 0.10 1.52 6.04 -51.93 -0.31 1.20 16 48 H 0.39 9.19 7.90 -40.82 -0.32 8.87 16 49 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 383.30 15.07 5.78 5.78 Total: -1.00 -30.25 383.30 -9.03 -39.29 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: -7.96 Total: 16.80 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -1.30 Total: 1.35 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: -0.67 Total: -55.23 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: 0.15 Total: -23.40 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.25 -9.03 -39.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132054983.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.174 kcal (2) G-P(sol) polarization free energy of solvation -30.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds