Wall clock time and date at job start Fri Apr 10 2020 18:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.45639 * 2 1 4 4 C 1.53042 * 109.45814 * 240.02349 * 2 1 3 5 5 C 1.53123 * 109.27352 * 180.80752 * 4 2 1 6 6 C 1.53121 * 109.16470 * 57.65716 * 5 4 2 7 7 H 1.09000 * 109.53762 * 62.29896 * 6 5 4 8 8 N 1.46498 * 109.50301 * 182.40383 * 6 5 4 9 9 C 1.34779 * 119.99827 * 275.07414 * 8 6 5 10 10 O 1.21286 * 119.99820 * 359.72687 * 9 8 6 11 11 C 1.50692 * 119.99967 * 179.72768 * 9 8 6 12 12 C 1.53000 * 115.55075 * 34.32958 * 11 9 8 13 13 C 1.53002 * 117.49999 * 248.62405 * 11 9 8 14 14 C 1.52996 * 117.50043 * 179.97438 * 11 9 8 15 15 C 1.53046 * 109.27520 * 302.34484 * 6 5 4 16 16 N 1.46846 * 109.52245 * 59.17909 * 15 6 5 17 17 C 1.46898 * 110.99761 * 174.16496 * 16 15 6 18 18 C 1.50705 * 109.46777 * 284.43106 * 17 16 15 19 19 O 1.21290 * 119.99953 * 359.97438 * 18 17 16 20 20 N 1.34782 * 120.00043 * 180.02562 * 18 17 16 21 21 C 1.37094 * 120.00081 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99766 * 359.97438 * 21 20 18 23 23 C 1.38945 * 120.00045 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00236 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 120.00038 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47316 * 59.99457 * 25 23 21 27 27 H 1.48493 * 109.47120 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.46767 * 299.99583 * 25 23 21 29 29 H 1.09006 * 109.46763 * 307.74059 * 1 2 3 30 30 H 1.09004 * 109.47348 * 67.73790 * 1 2 3 31 31 H 1.08996 * 109.47709 * 187.74267 * 1 2 3 32 32 H 1.08996 * 109.50352 * 300.74201 * 4 2 1 33 33 H 1.08999 * 109.50321 * 60.86889 * 4 2 1 34 34 H 1.08997 * 109.52340 * 297.75037 * 5 4 2 35 35 H 1.09003 * 109.52135 * 177.55699 * 5 4 2 36 36 H 0.96998 * 120.00299 * 94.80285 * 8 6 5 37 37 H 1.09001 * 109.47099 * 85.58605 * 12 11 9 38 38 H 1.09001 * 109.47370 * 205.58436 * 12 11 9 39 39 H 1.09003 * 109.47391 * 325.58479 * 12 11 9 40 40 H 1.09002 * 117.49388 * 359.97438 * 13 11 9 41 41 H 1.08994 * 117.50239 * 145.02407 * 13 11 9 42 42 H 1.08999 * 117.50241 * 214.97903 * 14 11 9 43 43 H 1.09000 * 117.49912 * 0.02562 * 14 11 9 44 44 H 1.08997 * 109.45889 * 179.19420 * 15 6 5 45 45 H 1.09000 * 109.45967 * 299.17272 * 15 6 5 46 46 H 1.09001 * 109.47569 * 44.42565 * 17 16 15 47 47 H 1.08999 * 109.47626 * 164.43217 * 17 16 15 48 48 H 0.96998 * 119.99696 * 359.97438 * 20 18 17 49 49 H 0.96998 * 120.00662 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7210 -1.2500 5 6 3.5709 -0.7362 -1.2356 6 6 4.0548 -1.4190 0.0467 7 1 3.7129 -2.4539 0.0599 8 7 5.5186 -1.3866 0.0956 9 6 6.2350 -2.3411 -0.5305 10 8 5.6677 -3.2297 -1.1303 11 6 7.7408 -2.3044 -0.4854 12 6 8.3493 -1.7717 0.8134 13 6 8.4794 -1.9980 -1.7898 14 6 8.4968 -3.4164 -1.2152 15 6 3.4864 -0.6778 1.2591 16 7 2.0193 -0.6918 1.1994 17 6 1.4373 -0.1105 2.4165 18 6 1.5514 -1.0982 3.5490 19 8 2.0664 -2.1800 3.3606 20 7 1.0803 -0.7797 4.7710 21 6 1.1836 -1.6784 5.8011 22 1 1.6422 -2.6417 5.6334 23 6 0.6975 -1.3503 7.0607 24 7 0.1391 -0.1783 7.2648 25 14 0.8389 -2.5746 8.4646 26 1 2.2701 -2.8906 8.7035 27 1 0.2501 -1.9872 9.6948 28 1 0.1094 -3.8189 8.1114 29 1 -0.3633 0.6291 0.8127 30 1 -0.3634 0.3893 -0.9511 31 1 -0.3634 -1.0182 0.1384 32 1 1.6658 -1.7448 -1.2575 33 1 1.6894 -0.1983 -2.1400 34 1 3.9456 0.2868 -1.2672 35 1 3.9379 -1.2866 -2.1019 36 1 5.9722 -0.6760 0.5753 37 1 8.4329 -2.5839 1.5355 38 1 9.3391 -1.3630 0.6101 39 1 7.7094 -0.9885 1.2200 40 1 7.8761 -1.8234 -2.6807 41 1 9.3990 -1.4167 -1.7229 42 1 9.4278 -3.7679 -0.7705 43 1 7.9050 -4.1744 -1.7284 44 1 3.8174 -1.1700 2.1736 45 1 3.8402 0.3532 1.2531 46 1 1.9735 0.8026 2.6754 47 1 0.3869 0.1221 2.2418 48 1 0.6682 0.0854 4.9216 49 1 -0.2000 0.0509 8.1442 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132054984.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:41 Heat of formation + Delta-G solvation = -47.532249 kcal Electronic energy + Delta-G solvation = -28205.540669 eV Core-core repulsion = 24361.085017 eV Total energy + Delta-G solvation = -3844.455652 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.44817 -39.32007 -37.73088 -36.77282 -35.00385 -33.91877 -32.65557 -31.40819 -31.14245 -28.84365 -27.68922 -26.45135 -24.60226 -23.52766 -22.95786 -22.72800 -21.07567 -20.07069 -19.34501 -19.01854 -17.82685 -17.22243 -16.40264 -16.04609 -15.38584 -15.24016 -14.93735 -14.55886 -14.47961 -14.30352 -14.21683 -13.88390 -13.68269 -13.38563 -13.21993 -13.03450 -12.76285 -12.54869 -12.37157 -12.28705 -12.00239 -11.82427 -11.72841 -11.49322 -11.40109 -11.04530 -10.94743 -10.85471 -10.78160 -10.62222 -10.42685 -10.31243 -10.23694 -10.17433 -9.73825 -9.45163 -9.03001 -8.45514 -7.93720 -7.84800 -6.38984 -3.79551 2.44838 2.99512 3.21744 3.27015 3.31713 3.59608 3.94141 3.98213 4.25368 4.37142 4.50780 4.58803 4.71489 4.79839 4.90980 4.94703 5.00661 5.21419 5.27114 5.32083 5.36058 5.36760 5.44912 5.47229 5.53015 5.54459 5.59358 5.64465 5.65299 5.77138 5.85073 5.87433 5.91268 5.93084 6.03638 6.05891 6.17362 6.25198 6.26974 6.31835 6.43828 6.50808 7.25784 7.39032 7.49097 7.57594 8.09491 8.22004 8.65692 9.21601 9.58254 10.10896 10.78876 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.012134 B = 0.003153 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.098045 B = 8878.032696 C =10663.508764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 H 0.037 0.963 4 C -0.107 4.107 5 C -0.128 4.128 6 C 0.150 3.850 7 H 0.100 0.900 8 N -0.719 5.719 9 C 0.551 3.449 10 O -0.538 6.538 11 C -0.167 4.167 12 C -0.115 4.115 13 C -0.151 4.151 14 C -0.144 4.144 15 C 0.057 3.943 16 N -0.504 5.504 17 C 0.040 3.960 18 C 0.444 3.556 19 O -0.574 6.574 20 N -0.567 5.567 21 C -0.297 4.297 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.904 5.904 25 Si 0.929 3.071 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.398 0.602 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.096 0.904 45 H 0.027 0.973 46 H 0.048 0.952 47 H 0.096 0.904 48 H 0.391 0.609 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.693 4.932 -16.652 20.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 H 0.055 0.945 4 C -0.145 4.145 5 C -0.167 4.167 6 C 0.046 3.954 7 H 0.119 0.881 8 N -0.369 5.369 9 C 0.337 3.663 10 O -0.415 6.415 11 C -0.170 4.170 12 C -0.172 4.172 13 C -0.188 4.188 14 C -0.182 4.182 15 C -0.071 4.071 16 N -0.229 5.229 17 C -0.091 4.091 18 C 0.229 3.771 19 O -0.457 6.457 20 N -0.205 5.205 21 C -0.427 4.427 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.546 5.546 25 Si 0.756 3.244 26 H -0.200 1.200 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.233 0.767 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.116 0.884 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.126 0.874 44 H 0.114 0.886 45 H 0.045 0.955 46 H 0.066 0.934 47 H 0.114 0.886 48 H 0.224 0.776 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.374 3.148 -17.045 20.732 hybrid contribution 0.199 1.307 1.285 1.843 sum 11.574 4.455 -15.760 20.055 Atomic orbital electron populations 1.21952 0.94246 1.03190 1.01376 1.21683 0.95618 0.95077 0.90559 0.94510 1.21567 0.94541 1.02007 0.96399 1.21965 0.96202 1.00302 0.98193 1.20961 0.78025 1.02274 0.94177 0.88149 1.45934 1.07167 1.29010 1.54838 1.19418 0.87612 0.81051 0.78180 1.90698 1.72016 1.35593 1.43155 1.21508 0.91473 1.07914 0.96107 1.21361 1.00452 1.01180 0.94216 1.23093 1.01337 0.99524 0.94866 1.23031 1.01177 0.92032 1.01941 1.22247 0.88022 0.97739 0.99137 1.61337 1.05973 1.54835 1.00803 1.21986 1.01087 0.95725 0.90268 1.19796 0.84759 0.88956 0.83554 1.90526 1.48051 1.24234 1.82902 1.41861 1.53164 1.17670 1.07769 1.19636 1.36670 0.98693 0.87676 0.88042 1.25232 0.96879 0.97075 0.98755 1.69600 1.40041 1.20739 1.24190 0.85942 0.78675 0.80070 0.79680 1.19973 1.21026 1.19902 0.92300 0.92275 0.91204 0.90569 0.91372 0.92358 0.91504 0.76744 0.91323 0.91520 0.91842 0.88432 0.87879 0.87967 0.87416 0.88607 0.95475 0.93395 0.88560 0.77602 0.91900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 8.59 37.16 0.32 -1.46 16 2 C 0.08 1.02 2.44 -67.72 -0.17 0.85 16 3 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 4 C -0.11 -1.27 5.37 -26.65 -0.14 -1.41 16 5 C -0.13 -1.56 5.58 -26.61 -0.15 -1.71 16 6 C 0.15 2.15 2.62 -67.85 -0.18 1.97 16 7 H 0.10 1.80 7.58 -51.93 -0.39 1.41 16 8 N -0.72 -8.86 4.98 -53.72 -0.27 -9.13 16 9 C 0.55 7.47 7.36 -10.99 -0.08 7.39 16 10 O -0.54 -9.35 15.92 5.55 0.09 -9.26 16 11 C -0.17 -1.67 2.61 -155.67 -0.41 -2.08 16 12 C -0.11 -0.92 9.79 37.16 0.36 -0.56 16 13 C -0.15 -1.22 9.88 -26.70 -0.26 -1.49 16 14 C -0.14 -1.33 9.77 -26.71 -0.26 -1.59 16 15 C 0.06 0.88 4.58 -3.83 -0.02 0.86 16 16 N -0.50 -8.25 4.05 -228.11 -0.92 -9.17 16 17 C 0.04 0.71 5.31 -4.97 -0.03 0.68 16 18 C 0.44 10.42 7.49 -10.98 -0.08 10.33 16 19 O -0.57 -15.52 14.74 5.55 0.08 -15.44 16 20 N -0.57 -14.31 5.29 -10.96 -0.06 -14.37 16 21 C -0.30 -8.29 9.68 -14.94 -0.14 -8.43 16 22 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.59 13.05 55.50 0.72 -23.87 16 25 Si 0.93 21.18 29.55 -169.99 -5.02 16.15 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 29 H 0.06 0.69 6.38 -51.93 -0.33 0.36 16 30 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.40 3.92 6.90 -40.82 -0.28 3.64 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.41 7.90 -51.93 -0.41 0.00 16 39 H 0.06 0.47 6.38 -51.93 -0.33 0.14 16 40 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.10 0.62 8.05 -51.93 -0.42 0.20 16 42 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.11 1.17 7.67 -51.93 -0.40 0.77 16 44 H 0.10 1.79 6.69 -51.93 -0.35 1.44 16 45 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.05 0.77 8.00 -51.93 -0.42 0.35 16 47 H 0.10 1.54 5.42 -51.93 -0.28 1.26 16 48 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 49 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 389.37 15.07 5.87 5.87 Total: -1.00 -33.03 389.37 -8.93 -41.97 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: -8.09 Total: 13.40 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -1.33 Total: 3.85 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: -0.53 Total: -56.54 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: 0.17 Total: -24.70 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.03 -8.93 -41.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132054984.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.564 kcal (2) G-P(sol) polarization free energy of solvation -33.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds