Wall clock time and date at job start Fri Apr 10 2020 18:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.45639 * 2 1 4 4 C 1.53042 * 109.45814 * 240.02349 * 2 1 3 5 5 C 1.53123 * 109.27352 * 180.80752 * 4 2 1 6 6 C 1.53121 * 109.16470 * 57.65716 * 5 4 2 7 7 H 1.09000 * 109.53762 * 62.29896 * 6 5 4 8 8 N 1.46498 * 109.50301 * 182.40383 * 6 5 4 9 9 C 1.34779 * 119.99827 * 275.07414 * 8 6 5 10 10 O 1.21286 * 119.99820 * 359.72687 * 9 8 6 11 11 C 1.50692 * 119.99967 * 179.72768 * 9 8 6 12 12 C 1.53000 * 115.55075 * 34.32958 * 11 9 8 13 13 C 1.53002 * 117.49999 * 248.62405 * 11 9 8 14 14 C 1.52996 * 117.50043 * 179.97438 * 11 9 8 15 15 C 1.53046 * 109.27520 * 302.34484 * 6 5 4 16 16 N 1.46846 * 109.52245 * 59.17909 * 15 6 5 17 17 C 1.46898 * 110.99761 * 174.16496 * 16 15 6 18 18 C 1.50705 * 109.46777 * 284.43106 * 17 16 15 19 19 O 1.21290 * 119.99953 * 359.97438 * 18 17 16 20 20 N 1.34782 * 120.00043 * 180.02562 * 18 17 16 21 21 C 1.37094 * 120.00081 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99766 * 359.97438 * 21 20 18 23 23 C 1.38945 * 120.00045 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00236 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 120.00038 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47316 * 59.99457 * 25 23 21 27 27 H 1.48493 * 109.47120 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.46767 * 299.99583 * 25 23 21 29 29 H 1.09006 * 109.46763 * 307.74059 * 1 2 3 30 30 H 1.09004 * 109.47348 * 67.73790 * 1 2 3 31 31 H 1.08996 * 109.47709 * 187.74267 * 1 2 3 32 32 H 1.08996 * 109.50352 * 300.74201 * 4 2 1 33 33 H 1.08999 * 109.50321 * 60.86889 * 4 2 1 34 34 H 1.08997 * 109.52340 * 297.75037 * 5 4 2 35 35 H 1.09003 * 109.52135 * 177.55699 * 5 4 2 36 36 H 0.96998 * 120.00299 * 94.80285 * 8 6 5 37 37 H 1.09001 * 109.47099 * 85.58605 * 12 11 9 38 38 H 1.09001 * 109.47370 * 205.58436 * 12 11 9 39 39 H 1.09003 * 109.47391 * 325.58479 * 12 11 9 40 40 H 1.09002 * 117.49388 * 359.97438 * 13 11 9 41 41 H 1.08994 * 117.50239 * 145.02407 * 13 11 9 42 42 H 1.08999 * 117.50241 * 214.97903 * 14 11 9 43 43 H 1.09000 * 117.49912 * 0.02562 * 14 11 9 44 44 H 1.08997 * 109.45889 * 179.19420 * 15 6 5 45 45 H 1.09000 * 109.45967 * 299.17272 * 15 6 5 46 46 H 1.09001 * 109.47569 * 44.42565 * 17 16 15 47 47 H 1.08999 * 109.47626 * 164.43217 * 17 16 15 48 48 H 0.96998 * 119.99696 * 359.97438 * 20 18 17 49 49 H 0.96998 * 120.00662 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7210 -1.2500 5 6 3.5709 -0.7362 -1.2356 6 6 4.0548 -1.4190 0.0467 7 1 3.7129 -2.4539 0.0599 8 7 5.5186 -1.3866 0.0956 9 6 6.2350 -2.3411 -0.5305 10 8 5.6677 -3.2297 -1.1303 11 6 7.7408 -2.3044 -0.4854 12 6 8.3493 -1.7717 0.8134 13 6 8.4794 -1.9980 -1.7898 14 6 8.4968 -3.4164 -1.2152 15 6 3.4864 -0.6778 1.2591 16 7 2.0193 -0.6918 1.1994 17 6 1.4373 -0.1105 2.4165 18 6 1.5514 -1.0982 3.5490 19 8 2.0664 -2.1800 3.3606 20 7 1.0803 -0.7797 4.7710 21 6 1.1836 -1.6784 5.8011 22 1 1.6422 -2.6417 5.6334 23 6 0.6975 -1.3503 7.0607 24 7 0.1391 -0.1783 7.2648 25 14 0.8389 -2.5746 8.4646 26 1 2.2701 -2.8906 8.7035 27 1 0.2501 -1.9872 9.6948 28 1 0.1094 -3.8189 8.1114 29 1 -0.3633 0.6291 0.8127 30 1 -0.3634 0.3893 -0.9511 31 1 -0.3634 -1.0182 0.1384 32 1 1.6658 -1.7448 -1.2575 33 1 1.6894 -0.1983 -2.1400 34 1 3.9456 0.2868 -1.2672 35 1 3.9379 -1.2866 -2.1019 36 1 5.9722 -0.6760 0.5753 37 1 8.4329 -2.5839 1.5355 38 1 9.3391 -1.3630 0.6101 39 1 7.7094 -0.9885 1.2200 40 1 7.8761 -1.8234 -2.6807 41 1 9.3990 -1.4167 -1.7229 42 1 9.4278 -3.7679 -0.7705 43 1 7.9050 -4.1744 -1.7284 44 1 3.8174 -1.1700 2.1736 45 1 3.8402 0.3532 1.2531 46 1 1.9735 0.8026 2.6754 47 1 0.3869 0.1221 2.2418 48 1 0.6682 0.0854 4.9216 49 1 -0.2000 0.0509 8.1442 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132054984.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:40 Heat of formation + Delta-G solvation = -71.406413 kcal Electronic energy + Delta-G solvation = -28206.575931 eV Core-core repulsion = 24361.085017 eV Total energy + Delta-G solvation = -3845.490913 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.52450 -40.61984 -39.38006 -37.69792 -36.21902 -35.88456 -33.89140 -33.21417 -32.42017 -29.53774 -29.14051 -27.61593 -26.39292 -24.55665 -24.17313 -23.40538 -22.20533 -21.14772 -20.96705 -20.24952 -19.82800 -18.12910 -17.77269 -17.50692 -16.64615 -16.54244 -16.33501 -16.02732 -15.72622 -15.58945 -15.32987 -15.24705 -15.02903 -14.63932 -14.40788 -14.02892 -13.86601 -13.55000 -13.48845 -13.41050 -13.31143 -13.19102 -12.97797 -12.79067 -12.58671 -12.42766 -12.39772 -12.13352 -12.04904 -11.90724 -11.81286 -11.52979 -11.45695 -11.36137 -10.99326 -10.78599 -10.32246 -10.11691 -9.98269 -9.17675 -8.45213 -5.93455 1.39103 1.40691 1.43921 1.51329 1.96803 2.09437 2.29192 2.78229 2.83338 3.21511 3.42616 3.57032 3.65035 3.78282 3.81862 3.88699 3.91873 4.02100 4.03397 4.22355 4.31806 4.40370 4.44706 4.50219 4.57307 4.61700 4.68614 4.76704 4.80994 4.82403 4.83202 4.90027 4.95501 4.96904 5.02418 5.06823 5.16234 5.20840 5.25012 5.28426 5.37640 5.41494 5.46690 5.90683 6.09643 6.26051 6.48560 6.63620 7.15492 7.18964 7.59724 8.16909 8.72001 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.012134 B = 0.003153 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.098045 B = 8878.032696 C =10663.508764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.080 3.920 3 H 0.061 0.939 4 C -0.103 4.103 5 C -0.117 4.117 6 C 0.157 3.843 7 H 0.051 0.949 8 N -0.709 5.709 9 C 0.542 3.458 10 O -0.587 6.587 11 C -0.179 4.179 12 C -0.112 4.112 13 C -0.128 4.128 14 C -0.152 4.152 15 C 0.065 3.935 16 N -0.531 5.531 17 C 0.055 3.945 18 C 0.441 3.559 19 O -0.617 6.617 20 N -0.576 5.576 21 C -0.331 4.331 22 H 0.075 0.925 23 C -0.011 4.011 24 N -0.920 5.920 25 Si 0.989 3.011 26 H -0.272 1.272 27 H -0.269 1.269 28 H -0.274 1.274 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.057 0.943 36 H 0.412 0.588 37 H 0.058 0.942 38 H 0.093 0.907 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.136 0.864 42 H 0.125 0.875 43 H 0.082 0.918 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.073 0.927 47 H 0.117 0.883 48 H 0.396 0.604 49 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.656 7.485 -17.333 22.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 H 0.079 0.921 4 C -0.142 4.142 5 C -0.156 4.156 6 C 0.051 3.949 7 H 0.070 0.930 8 N -0.361 5.361 9 C 0.331 3.669 10 O -0.467 6.467 11 C -0.182 4.182 12 C -0.169 4.169 13 C -0.165 4.165 14 C -0.190 4.190 15 C -0.064 4.064 16 N -0.257 5.257 17 C -0.076 4.076 18 C 0.229 3.771 19 O -0.502 6.502 20 N -0.214 5.214 21 C -0.461 4.461 22 H 0.093 0.907 23 C -0.211 4.211 24 N -0.561 5.561 25 Si 0.813 3.187 26 H -0.198 1.198 27 H -0.193 1.193 28 H -0.200 1.200 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.118 0.882 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.249 0.751 37 H 0.077 0.923 38 H 0.112 0.888 39 H 0.085 0.915 40 H 0.108 0.892 41 H 0.154 0.846 42 H 0.143 0.857 43 H 0.101 0.899 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.090 0.910 47 H 0.135 0.865 48 H 0.230 0.770 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.339 5.756 -17.723 22.350 hybrid contribution -0.109 0.472 1.447 1.526 sum 12.230 6.227 -16.277 21.290 Atomic orbital electron populations 1.21956 0.93456 1.02045 1.03140 1.21816 0.96248 0.95841 0.88865 0.92109 1.21586 0.94113 1.01084 0.97396 1.21876 0.96516 1.01073 0.96103 1.20726 0.79174 0.99683 0.95281 0.93021 1.45856 1.06436 1.29249 1.54530 1.20159 0.89363 0.80220 0.77206 1.90671 1.73317 1.37381 1.45338 1.21539 0.88898 1.09496 0.98283 1.21388 1.01801 1.00922 0.92755 1.23212 1.01668 0.98508 0.93098 1.23094 1.01538 0.92177 1.02168 1.22089 0.87918 0.98839 0.97530 1.61244 1.06457 1.56454 1.01550 1.21827 1.02892 0.94327 0.88558 1.20903 0.82633 0.89362 0.84249 1.90502 1.49438 1.26582 1.83710 1.41916 1.53840 1.17529 1.08095 1.19570 1.38424 0.98703 0.89410 0.90706 1.25965 0.95977 0.98790 1.00371 1.69655 1.39842 1.21632 1.25021 0.85050 0.78653 0.77889 0.77114 1.19773 1.19334 1.19988 0.91927 0.89419 0.93487 0.92944 0.88166 0.89798 0.92448 0.75067 0.92283 0.88778 0.91521 0.89178 0.84633 0.85690 0.89893 0.92735 0.92481 0.90959 0.86537 0.77038 0.91329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 8.59 71.98 0.62 -2.57 16 2 C 0.08 1.86 2.44 44.94 0.11 1.97 16 3 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 4 C -0.10 -2.29 5.37 30.65 0.16 -2.13 16 5 C -0.12 -2.72 5.58 30.68 0.17 -2.55 16 6 C 0.16 4.60 2.62 45.05 0.12 4.72 16 7 H 0.05 2.03 7.58 -2.39 -0.02 2.01 16 8 N -0.71 -17.68 4.98 -442.27 -2.20 -19.89 16 9 C 0.54 15.18 7.36 87.65 0.64 15.82 16 10 O -0.59 -21.78 15.92 -3.05 -0.05 -21.83 16 11 C -0.18 -3.45 2.61 -52.93 -0.14 -3.58 16 12 C -0.11 -1.59 9.79 71.98 0.70 -0.89 16 13 C -0.13 -1.81 9.88 30.61 0.30 -1.50 16 14 C -0.15 -2.72 9.77 30.61 0.30 -2.42 16 15 C 0.06 2.00 4.58 86.33 0.40 2.39 16 16 N -0.53 -17.14 4.05 -875.61 -3.55 -20.69 16 17 C 0.05 1.88 5.31 85.56 0.45 2.33 16 18 C 0.44 21.25 7.49 87.66 0.66 21.90 16 19 O -0.62 -35.09 14.74 -3.06 -0.05 -35.13 16 20 N -0.58 -29.73 5.29 -306.98 -1.62 -31.36 16 21 C -0.33 -19.06 9.68 84.04 0.81 -18.24 16 22 H 0.07 4.62 7.16 -2.91 -0.02 4.60 16 23 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 24 N -0.92 -49.77 13.05 21.66 0.28 -49.49 16 25 Si 0.99 43.50 29.55 68.60 2.03 45.53 16 26 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 27 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 28 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 29 H 0.06 1.29 6.38 -2.38 -0.02 1.27 16 30 H 0.09 1.38 8.13 -2.39 -0.02 1.36 16 31 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.41 7.77 6.90 -92.71 -0.64 7.13 16 37 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.09 0.84 7.90 -2.39 -0.02 0.82 16 39 H 0.07 0.89 6.38 -2.39 -0.02 0.87 16 40 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.14 1.07 8.05 -2.39 -0.02 1.05 16 42 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.08 1.90 7.67 -2.39 -0.02 1.88 16 44 H 0.05 2.13 6.69 -2.39 -0.02 2.11 16 45 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.07 2.15 8.00 -2.39 -0.02 2.13 16 47 H 0.12 3.54 5.42 -2.39 -0.01 3.52 16 48 H 0.40 19.27 7.90 -92.71 -0.73 18.54 16 49 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -76.53 389.37 0.21 -76.31 By element: Atomic # 1 Polarization: 41.84 SS G_CDS: -0.41 Total: 41.43 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: 5.78 Total: 15.11 kcal Atomic # 7 Polarization: -114.33 SS G_CDS: -7.09 Total: -121.42 kcal Atomic # 8 Polarization: -56.87 SS G_CDS: -0.09 Total: -56.96 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -76.53 0.21 -76.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132054984.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.906 kcal (2) G-P(sol) polarization free energy of solvation -76.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds