Wall clock time and date at job start Fri Apr 10 2020 18:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.59012 * 2 1 4 4 C 1.53199 * 109.58478 * 120.42874 * 2 1 3 5 5 C 1.53039 * 109.31214 * 174.42028 * 4 2 1 6 6 C 1.53044 * 109.53915 * 298.63472 * 5 4 2 7 7 H 1.09000 * 109.49748 * 301.41601 * 6 5 4 8 8 N 1.46499 * 109.49759 * 181.34938 * 6 5 4 9 9 C 1.34769 * 119.99956 * 154.99787 * 8 6 5 10 10 O 1.21278 * 120.00118 * 0.02562 * 9 8 6 11 11 C 1.50705 * 119.99870 * 180.02562 * 9 8 6 12 12 N 1.46504 * 109.47119 * 180.02562 * 11 9 8 13 13 C 1.46499 * 120.00084 * 89.99736 * 12 11 9 14 14 C 1.34779 * 119.99860 * 270.00020 * 12 11 9 15 15 O 1.21285 * 119.99554 * 359.97438 * 14 12 11 16 16 C 1.50698 * 120.00061 * 180.02562 * 14 12 11 17 17 C 1.52996 * 117.49812 * 248.62083 * 16 14 12 18 18 C 1.52997 * 60.00118 * 252.51224 * 17 16 14 19 19 C 1.52761 * 109.38168 * 61.24182 * 6 5 4 20 20 N 1.46931 * 109.58506 * 239.71442 * 2 1 3 21 21 C 1.36932 * 120.63156 * 6.58464 * 20 2 1 22 22 H 1.07996 * 119.99883 * 331.50898 * 21 20 2 23 23 C 1.38812 * 120.00009 * 151.50845 * 21 20 2 24 24 N 1.31622 * 120.00366 * 160.27545 * 23 21 20 25 25 Si 1.86802 * 119.99817 * 340.55041 * 23 21 20 26 26 H 1.48499 * 109.47239 * 94.49804 * 25 23 21 27 27 H 1.48507 * 109.47308 * 214.49505 * 25 23 21 28 28 H 1.48500 * 109.47408 * 334.49500 * 25 23 21 29 29 H 1.08999 * 109.47021 * 180.28156 * 1 2 3 30 30 H 1.08995 * 109.46977 * 300.28698 * 1 2 3 31 31 H 1.09003 * 109.46966 * 60.28325 * 1 2 3 32 32 H 1.09002 * 109.49686 * 294.37374 * 4 2 1 33 33 H 1.09001 * 109.49714 * 54.44004 * 4 2 1 34 34 H 1.08999 * 109.45994 * 58.65542 * 5 4 2 35 35 H 1.08995 * 109.45870 * 178.62833 * 5 4 2 36 36 H 0.97003 * 119.99802 * 335.00022 * 8 6 5 37 37 H 1.09004 * 109.47152 * 299.99992 * 11 9 8 38 38 H 1.08998 * 109.47451 * 60.00331 * 11 9 8 39 39 H 1.09003 * 109.46735 * 90.00326 * 13 12 11 40 40 H 1.08997 * 109.47183 * 210.00140 * 13 12 11 41 41 H 1.08999 * 109.47242 * 330.00045 * 13 12 11 42 42 H 1.09001 * 115.54915 * 34.32940 * 16 14 12 43 43 H 1.08999 * 117.49910 * 0.02562 * 17 16 14 44 44 H 1.09003 * 117.49920 * 145.01683 * 17 16 14 45 45 H 1.09004 * 117.49468 * 252.51660 * 18 17 16 46 46 H 1.08995 * 117.51973 * 107.48365 * 18 17 16 47 47 H 1.08999 * 109.50839 * 185.71008 * 19 6 5 48 48 H 1.08996 * 109.43605 * 65.41981 * 19 6 5 49 49 H 0.97000 * 120.00122 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0268 0.0000 4 6 2.0435 -0.7310 1.2446 5 6 3.5675 -0.8496 1.1691 6 6 3.9569 -1.6658 -0.0655 7 1 3.4982 -2.6529 -0.0086 8 7 5.4142 -1.8060 -0.1193 9 6 5.9672 -2.8482 -0.7707 10 8 5.2586 -3.6697 -1.3127 11 6 7.4663 -2.9927 -0.8255 12 7 7.8134 -4.1961 -1.5856 13 6 8.0137 -4.1148 -3.0346 14 6 7.9484 -5.3779 -0.9519 15 8 7.7830 -5.4450 0.2478 16 6 8.3060 -6.6156 -1.7336 17 6 7.2358 -7.7008 -1.8669 18 6 8.4447 -7.9264 -0.9567 19 6 3.4645 -0.9503 -1.3222 20 7 2.0225 -0.6981 -1.1954 21 6 1.1536 -1.1108 -2.1699 22 1 0.1337 -1.3577 -1.9147 23 6 1.5838 -1.2118 -3.4859 24 7 0.9135 -1.9532 -4.3423 25 14 3.1183 -0.3016 -4.0393 26 1 4.2913 -1.2076 -3.9478 27 1 2.9479 0.1470 -5.4447 28 1 3.3356 0.8794 -3.1657 29 1 -0.3633 -1.0276 0.0051 30 1 -0.3633 0.5183 0.8874 31 1 -0.3633 0.5094 -0.8925 32 1 1.7660 -0.1696 2.1367 33 1 1.6025 -1.7268 1.2895 34 1 4.0061 0.1458 1.0996 35 1 3.9377 -1.3478 2.0651 36 1 5.9809 -1.1488 0.3140 37 1 7.8981 -2.1185 -1.3127 38 1 7.8606 -3.0761 0.1873 39 1 9.0616 -3.9008 -3.2450 40 1 7.7375 -5.0642 -3.4933 41 1 7.3911 -3.3190 -3.4434 42 1 8.9736 -6.4598 -2.5811 43 1 6.2729 -7.5193 -1.3895 44 1 7.1988 -8.2591 -2.8024 45 1 9.2032 -8.6331 -1.2935 46 1 8.2777 -7.8934 0.1198 47 1 3.6503 -1.5771 -2.1944 48 1 3.9928 -0.0032 -1.4309 49 1 1.2143 -2.0240 -5.2618 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132097798.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:44 Heat of formation + Delta-G solvation = -13.285616 kcal Electronic energy + Delta-G solvation = -28883.431091 eV Core-core repulsion = 25040.460485 eV Total energy + Delta-G solvation = -3842.970607 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.46291 -39.37326 -37.88630 -36.34305 -35.45198 -34.49521 -32.81609 -31.14946 -30.67584 -29.02116 -26.75593 -26.11926 -24.88811 -23.72375 -22.70497 -22.56551 -20.94462 -20.32999 -19.37476 -18.99585 -17.66476 -17.20738 -16.62291 -16.44219 -15.72893 -15.39063 -15.00142 -14.80754 -14.57908 -14.40752 -14.04586 -13.75263 -13.51644 -13.35686 -13.07419 -13.00424 -12.72951 -12.50865 -12.40003 -12.13022 -11.95323 -11.70736 -11.69349 -11.41031 -11.26084 -10.78459 -10.76477 -10.72002 -10.66890 -10.36638 -10.26325 -10.01853 -9.94872 -9.82005 -9.65167 -9.40433 -8.82879 -8.72656 -8.48544 -6.90536 -5.89564 -3.26665 2.35234 2.69904 2.88471 3.36110 3.47288 3.48788 3.51021 3.73091 4.32340 4.57971 4.61807 4.72567 4.81550 4.87515 4.99078 5.00235 5.04456 5.19094 5.21498 5.25643 5.35792 5.45585 5.47962 5.52641 5.56302 5.63123 5.76830 5.81430 5.95315 5.97319 6.02716 6.12636 6.19687 6.25123 6.28622 6.36035 6.49222 6.55495 6.63112 6.67463 6.87781 7.01044 7.10553 7.18415 7.74065 8.01839 8.06238 8.40363 8.50811 8.98423 9.77898 10.14005 11.26086 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.014237 B = 0.003828 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.269827 B = 7312.857430 C = 8150.132858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.169 3.831 3 H 0.030 0.970 4 C -0.128 4.128 5 C -0.116 4.116 6 C 0.126 3.874 7 H 0.089 0.911 8 N -0.726 5.726 9 C 0.490 3.510 10 O -0.518 6.518 11 C 0.096 3.904 12 N -0.596 5.596 13 C 0.081 3.919 14 C 0.551 3.449 15 O -0.540 6.540 16 C -0.194 4.194 17 C -0.148 4.148 18 C -0.149 4.149 19 C 0.123 3.877 20 N -0.598 5.598 21 C -0.260 4.260 22 H 0.092 0.908 23 C 0.028 3.972 24 N -0.906 5.906 25 Si 0.880 3.120 26 H -0.290 1.290 27 H -0.304 1.304 28 H -0.271 1.271 29 H 0.057 0.943 30 H 0.040 0.960 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.394 0.606 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.058 0.942 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.124 0.876 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.102 0.898 46 H 0.106 0.894 47 H 0.076 0.924 48 H 0.023 0.977 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.883 -2.580 7.323 18.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.063 3.937 3 H 0.048 0.952 4 C -0.167 4.167 5 C -0.154 4.154 6 C 0.021 3.979 7 H 0.107 0.893 8 N -0.378 5.378 9 C 0.273 3.727 10 O -0.393 6.393 11 C -0.031 4.031 12 N -0.328 5.328 13 C -0.062 4.062 14 C 0.340 3.660 15 O -0.417 6.417 16 C -0.215 4.215 17 C -0.185 4.185 18 C -0.187 4.187 19 C -0.004 4.004 20 N -0.322 5.322 21 C -0.388 4.388 22 H 0.110 0.890 23 C -0.171 4.171 24 N -0.549 5.549 25 Si 0.711 3.289 26 H -0.218 1.218 27 H -0.233 1.233 28 H -0.196 1.196 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.227 0.773 37 H 0.124 0.876 38 H 0.130 0.870 39 H 0.076 0.924 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.142 0.858 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.120 0.880 46 H 0.125 0.875 47 H 0.095 0.905 48 H 0.040 0.960 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 16.217 -3.278 7.361 18.108 hybrid contribution 1.209 0.974 -0.478 1.624 sum 17.425 -2.304 6.884 18.877 Atomic orbital electron populations 1.21817 0.95223 1.01976 1.00463 1.20508 0.93733 0.93332 0.86116 0.95231 1.22051 0.94124 1.01735 0.98832 1.21679 0.97557 0.99528 0.96670 1.21659 0.78137 1.01163 0.96957 0.89273 1.46097 1.08410 1.27136 1.56149 1.21088 0.90936 0.81649 0.78999 1.90768 1.63089 1.41435 1.43967 1.21323 0.93028 0.88855 0.99847 1.47254 1.69261 1.07558 1.08719 1.21843 1.00943 1.04167 0.79220 1.19676 0.75592 0.83494 0.87209 1.90675 1.50851 1.85211 1.14928 1.22147 1.06400 0.89326 1.03591 1.22958 0.94511 0.98885 1.02182 1.22954 1.00408 0.95771 0.99539 1.21572 0.85574 0.96745 0.96461 1.44369 1.01684 1.65452 1.20708 1.18917 0.95400 1.38784 0.85712 0.89004 1.25285 0.97319 0.98627 0.95890 1.69826 1.41307 1.38900 1.04874 0.86952 0.83970 0.81077 0.76905 1.21821 1.23293 1.19646 0.92370 0.94080 0.91698 0.92182 0.91621 0.92139 0.92408 0.77297 0.87574 0.87012 0.92351 0.90392 0.90696 0.85826 0.87918 0.87669 0.87979 0.87514 0.90546 0.95962 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 7.94 37.16 0.30 -2.24 16 2 C 0.17 3.29 3.50 -67.59 -0.24 3.06 16 3 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.13 -2.08 5.37 -26.61 -0.14 -2.22 16 5 C -0.12 -1.76 5.36 -26.69 -0.14 -1.91 16 6 C 0.13 2.36 2.59 -68.03 -0.18 2.19 16 7 H 0.09 1.98 7.58 -51.93 -0.39 1.58 16 8 N -0.73 -11.17 5.08 -53.90 -0.27 -11.44 16 9 C 0.49 8.37 7.86 -10.99 -0.09 8.28 16 10 O -0.52 -11.58 16.09 5.56 0.09 -11.49 16 11 C 0.10 1.20 5.89 -5.19 -0.03 1.17 16 12 N -0.60 -7.82 2.36 -182.95 -0.43 -8.25 16 13 C 0.08 0.83 10.01 59.85 0.60 1.43 16 14 C 0.55 7.96 7.46 -10.99 -0.08 7.88 16 15 O -0.54 -9.54 15.84 5.55 0.09 -9.46 16 16 C -0.19 -2.11 4.80 -91.78 -0.44 -2.55 16 17 C -0.15 -1.58 10.23 -26.73 -0.27 -1.85 16 18 C -0.15 -1.46 10.04 -26.73 -0.27 -1.73 16 19 C 0.12 2.79 3.74 -3.93 -0.01 2.77 16 20 N -0.60 -14.34 2.76 -165.03 -0.46 -14.80 16 21 C -0.26 -7.33 9.06 -15.06 -0.14 -7.46 16 22 H 0.09 2.71 6.37 -52.49 -0.33 2.38 16 23 C 0.03 0.83 5.24 -17.43 -0.09 0.73 16 24 N -0.91 -28.49 13.97 55.49 0.78 -27.71 16 25 Si 0.88 23.09 24.36 -169.99 -4.14 18.95 16 26 H -0.29 -7.60 6.71 56.52 0.38 -7.22 16 27 H -0.30 -8.06 7.11 56.52 0.40 -7.66 16 28 H -0.27 -6.89 6.48 56.52 0.37 -6.52 16 29 H 0.06 1.14 7.45 -51.93 -0.39 0.75 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 1.30 7.61 -51.93 -0.40 0.91 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.39 4.40 8.60 -40.82 -0.35 4.05 16 37 H 0.11 0.95 8.07 -51.93 -0.42 0.53 16 38 H 0.11 1.29 7.42 -51.93 -0.39 0.91 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.75 6.64 -51.93 -0.34 0.41 16 41 H 0.07 0.86 8.07 -51.93 -0.42 0.44 16 42 H 0.12 1.00 7.26 -51.93 -0.38 0.63 16 43 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 44 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.11 1.21 7.67 -51.93 -0.40 0.82 16 47 H 0.08 2.01 4.64 -51.93 -0.24 1.77 16 48 H 0.02 0.49 6.96 -51.93 -0.36 0.13 16 49 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 LS Contribution 383.93 15.07 5.79 5.79 Total: -1.00 -37.55 383.93 -8.02 -45.57 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -8.23 Total: 5.29 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: -1.23 Total: 7.56 kcal Atomic # 7 Polarization: -61.82 SS G_CDS: -0.39 Total: -62.20 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: 0.18 Total: -20.95 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -4.14 Total: 18.95 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.55 -8.02 -45.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132097798.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.282 kcal (2) G-P(sol) polarization free energy of solvation -37.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds