Wall clock time and date at job start Fri Apr 10 2020 18:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.59012 * 2 1 4 4 C 1.53199 * 109.58478 * 120.42874 * 2 1 3 5 5 C 1.53039 * 109.31214 * 174.42028 * 4 2 1 6 6 C 1.53044 * 109.53915 * 298.63472 * 5 4 2 7 7 H 1.09000 * 109.49748 * 301.41601 * 6 5 4 8 8 N 1.46499 * 109.49759 * 181.34938 * 6 5 4 9 9 C 1.34769 * 119.99956 * 154.99787 * 8 6 5 10 10 O 1.21278 * 120.00118 * 0.02562 * 9 8 6 11 11 C 1.50705 * 119.99870 * 180.02562 * 9 8 6 12 12 N 1.46504 * 109.47119 * 180.02562 * 11 9 8 13 13 C 1.46499 * 120.00084 * 89.99736 * 12 11 9 14 14 C 1.34779 * 119.99860 * 270.00020 * 12 11 9 15 15 O 1.21285 * 119.99554 * 359.97438 * 14 12 11 16 16 C 1.50698 * 120.00061 * 180.02562 * 14 12 11 17 17 C 1.52996 * 117.49812 * 248.62083 * 16 14 12 18 18 C 1.52997 * 60.00118 * 252.51224 * 17 16 14 19 19 C 1.52761 * 109.38168 * 61.24182 * 6 5 4 20 20 N 1.46931 * 109.58506 * 239.71442 * 2 1 3 21 21 C 1.36932 * 120.63156 * 6.58464 * 20 2 1 22 22 H 1.07996 * 119.99883 * 331.50898 * 21 20 2 23 23 C 1.38812 * 120.00009 * 151.50845 * 21 20 2 24 24 N 1.31622 * 120.00366 * 160.27545 * 23 21 20 25 25 Si 1.86802 * 119.99817 * 340.55041 * 23 21 20 26 26 H 1.48499 * 109.47239 * 94.49804 * 25 23 21 27 27 H 1.48507 * 109.47308 * 214.49505 * 25 23 21 28 28 H 1.48500 * 109.47408 * 334.49500 * 25 23 21 29 29 H 1.08999 * 109.47021 * 180.28156 * 1 2 3 30 30 H 1.08995 * 109.46977 * 300.28698 * 1 2 3 31 31 H 1.09003 * 109.46966 * 60.28325 * 1 2 3 32 32 H 1.09002 * 109.49686 * 294.37374 * 4 2 1 33 33 H 1.09001 * 109.49714 * 54.44004 * 4 2 1 34 34 H 1.08999 * 109.45994 * 58.65542 * 5 4 2 35 35 H 1.08995 * 109.45870 * 178.62833 * 5 4 2 36 36 H 0.97003 * 119.99802 * 335.00022 * 8 6 5 37 37 H 1.09004 * 109.47152 * 299.99992 * 11 9 8 38 38 H 1.08998 * 109.47451 * 60.00331 * 11 9 8 39 39 H 1.09003 * 109.46735 * 90.00326 * 13 12 11 40 40 H 1.08997 * 109.47183 * 210.00140 * 13 12 11 41 41 H 1.08999 * 109.47242 * 330.00045 * 13 12 11 42 42 H 1.09001 * 115.54915 * 34.32940 * 16 14 12 43 43 H 1.08999 * 117.49910 * 0.02562 * 17 16 14 44 44 H 1.09003 * 117.49920 * 145.01683 * 17 16 14 45 45 H 1.09004 * 117.49468 * 252.51660 * 18 17 16 46 46 H 1.08995 * 117.51973 * 107.48365 * 18 17 16 47 47 H 1.08999 * 109.50839 * 185.71008 * 19 6 5 48 48 H 1.08996 * 109.43605 * 65.41981 * 19 6 5 49 49 H 0.97000 * 120.00122 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0268 0.0000 4 6 2.0435 -0.7310 1.2446 5 6 3.5675 -0.8496 1.1691 6 6 3.9569 -1.6658 -0.0655 7 1 3.4982 -2.6529 -0.0086 8 7 5.4142 -1.8060 -0.1193 9 6 5.9672 -2.8482 -0.7707 10 8 5.2586 -3.6697 -1.3127 11 6 7.4663 -2.9927 -0.8255 12 7 7.8134 -4.1961 -1.5856 13 6 8.0137 -4.1148 -3.0346 14 6 7.9484 -5.3779 -0.9519 15 8 7.7830 -5.4450 0.2478 16 6 8.3060 -6.6156 -1.7336 17 6 7.2358 -7.7008 -1.8669 18 6 8.4447 -7.9264 -0.9567 19 6 3.4645 -0.9503 -1.3222 20 7 2.0225 -0.6981 -1.1954 21 6 1.1536 -1.1108 -2.1699 22 1 0.1337 -1.3577 -1.9147 23 6 1.5838 -1.2118 -3.4859 24 7 0.9135 -1.9532 -4.3423 25 14 3.1183 -0.3016 -4.0393 26 1 4.2913 -1.2076 -3.9478 27 1 2.9479 0.1470 -5.4447 28 1 3.3356 0.8794 -3.1657 29 1 -0.3633 -1.0276 0.0051 30 1 -0.3633 0.5183 0.8874 31 1 -0.3633 0.5094 -0.8925 32 1 1.7660 -0.1696 2.1367 33 1 1.6025 -1.7268 1.2895 34 1 4.0061 0.1458 1.0996 35 1 3.9377 -1.3478 2.0651 36 1 5.9809 -1.1488 0.3140 37 1 7.8981 -2.1185 -1.3127 38 1 7.8606 -3.0761 0.1873 39 1 9.0616 -3.9008 -3.2450 40 1 7.7375 -5.0642 -3.4933 41 1 7.3911 -3.3190 -3.4434 42 1 8.9736 -6.4598 -2.5811 43 1 6.2729 -7.5193 -1.3895 44 1 7.1988 -8.2591 -2.8024 45 1 9.2032 -8.6331 -1.2935 46 1 8.2777 -7.8934 0.1198 47 1 3.6503 -1.5771 -2.1944 48 1 3.9928 -0.0032 -1.4309 49 1 1.2143 -2.0240 -5.2618 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132097798.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:43 Heat of formation + Delta-G solvation = -41.449600 kcal Electronic energy + Delta-G solvation = -28884.652373 eV Core-core repulsion = 25040.460485 eV Total energy + Delta-G solvation = -3844.191889 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.61190 -40.70219 -39.41755 -37.26594 -36.56194 -36.04787 -34.68922 -32.62210 -32.58663 -30.11168 -27.87503 -27.59805 -26.60806 -24.88985 -24.29738 -23.37637 -22.37442 -21.74782 -20.97751 -20.04037 -18.67109 -18.55524 -18.39078 -17.81404 -17.25085 -16.59085 -16.45374 -16.27763 -16.04029 -15.57699 -15.31278 -15.17602 -15.05186 -14.76533 -14.61316 -14.38553 -13.91793 -13.80308 -13.63051 -13.46883 -13.39509 -13.09395 -12.92094 -12.73625 -12.54571 -12.50210 -12.49342 -12.10889 -11.80366 -11.69780 -11.58104 -11.49710 -11.46045 -11.35407 -11.17067 -10.99672 -10.78452 -10.18761 -9.80594 -8.89299 -8.17377 -5.49312 1.23868 1.28369 1.30814 1.40712 1.56153 1.75563 2.25336 2.40242 2.88215 3.05154 3.32155 3.44291 3.71463 3.80066 3.83705 3.92655 3.99115 4.05634 4.09391 4.15842 4.17475 4.23883 4.29425 4.37859 4.56263 4.63567 4.64618 4.68284 4.79469 4.81484 4.83764 4.86104 4.93644 4.96511 4.98071 5.07830 5.13145 5.16402 5.22694 5.27992 5.42715 5.47770 5.61400 5.89071 6.16377 6.19583 6.52236 6.91295 7.00953 7.25840 7.63421 8.02081 9.02311 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.014237 B = 0.003828 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.269827 B = 7312.857430 C = 8150.132858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.158 3.842 3 H 0.050 0.950 4 C -0.122 4.122 5 C -0.107 4.107 6 C 0.136 3.864 7 H 0.043 0.957 8 N -0.710 5.710 9 C 0.481 3.519 10 O -0.582 6.582 11 C 0.100 3.900 12 N -0.600 5.600 13 C 0.076 3.924 14 C 0.538 3.462 15 O -0.584 6.584 16 C -0.197 4.197 17 C -0.156 4.156 18 C -0.138 4.138 19 C 0.124 3.876 20 N -0.614 5.614 21 C -0.240 4.240 22 H 0.064 0.936 23 C -0.039 4.039 24 N -0.959 5.959 25 Si 0.946 3.054 26 H -0.295 1.295 27 H -0.310 1.310 28 H -0.251 1.251 29 H 0.034 0.966 30 H 0.084 0.916 31 H 0.039 0.961 32 H 0.103 0.897 33 H 0.043 0.957 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.420 0.580 37 H 0.151 0.849 38 H 0.124 0.876 39 H 0.099 0.901 40 H 0.080 0.920 41 H 0.059 0.941 42 H 0.159 0.841 43 H 0.066 0.934 44 H 0.132 0.868 45 H 0.137 0.863 46 H 0.084 0.916 47 H 0.032 0.968 48 H 0.039 0.961 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.273 -0.598 8.990 22.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.054 3.946 3 H 0.068 0.932 4 C -0.161 4.161 5 C -0.145 4.145 6 C 0.029 3.971 7 H 0.061 0.939 8 N -0.363 5.363 9 C 0.267 3.733 10 O -0.461 6.461 11 C -0.026 4.026 12 N -0.331 5.331 13 C -0.066 4.066 14 C 0.328 3.672 15 O -0.464 6.464 16 C -0.217 4.217 17 C -0.194 4.194 18 C -0.175 4.175 19 C -0.002 4.002 20 N -0.340 5.340 21 C -0.370 4.370 22 H 0.082 0.918 23 C -0.233 4.233 24 N -0.606 5.606 25 Si 0.776 3.224 26 H -0.223 1.223 27 H -0.239 1.239 28 H -0.175 1.175 29 H 0.053 0.947 30 H 0.103 0.897 31 H 0.058 0.942 32 H 0.121 0.879 33 H 0.062 0.938 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.257 0.743 37 H 0.168 0.832 38 H 0.142 0.858 39 H 0.117 0.883 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.177 0.823 43 H 0.085 0.915 44 H 0.150 0.850 45 H 0.155 0.845 46 H 0.103 0.897 47 H 0.051 0.949 48 H 0.057 0.943 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 19.659 -1.219 9.083 21.690 hybrid contribution 0.054 0.336 -0.898 0.960 sum 19.713 -0.883 8.185 21.363 Atomic orbital electron populations 1.21762 0.95032 1.00764 1.01378 1.20882 0.94152 0.94178 0.85432 0.93198 1.21983 0.94785 1.00698 0.98615 1.21666 0.96831 1.00556 0.95407 1.21246 0.79815 0.98910 0.97089 0.93885 1.45896 1.07344 1.27469 1.55627 1.22077 0.92864 0.80798 0.77570 1.90750 1.64943 1.43715 1.46649 1.21507 0.89356 0.90436 1.01338 1.47491 1.68187 1.07477 1.09913 1.22054 1.03125 1.03927 0.77468 1.20378 0.74944 0.84791 0.87084 1.90638 1.52955 1.85970 1.16876 1.22315 1.06903 0.88030 1.04474 1.22967 0.93218 0.99696 1.03501 1.23024 1.00471 0.95848 0.98196 1.21511 0.85082 0.96840 0.96778 1.44566 1.01852 1.66359 1.21196 1.18912 0.95002 1.36393 0.86704 0.91837 1.25949 1.00888 1.00120 0.96359 1.69969 1.43979 1.41497 1.05121 0.85878 0.80212 0.80064 0.76211 1.22330 1.23864 1.17487 0.94716 0.89679 0.94158 0.87871 0.93830 0.89137 0.89704 0.74266 0.83186 0.85784 0.88285 0.90116 0.92196 0.82336 0.91523 0.84963 0.84464 0.89749 0.94941 0.94298 0.93316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.77 7.94 71.98 0.57 -4.20 16 2 C 0.16 5.82 3.50 44.98 0.16 5.98 16 3 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 4 C -0.12 -3.56 5.37 30.67 0.16 -3.40 16 5 C -0.11 -2.82 5.36 30.62 0.16 -2.66 16 6 C 0.14 4.96 2.59 44.93 0.12 5.08 16 7 H 0.04 1.98 7.58 -2.39 -0.02 1.96 16 8 N -0.71 -20.50 5.08 -442.85 -2.25 -22.75 16 9 C 0.48 16.22 7.86 87.66 0.69 16.91 16 10 O -0.58 -27.11 16.09 -3.02 -0.05 -27.16 16 11 C 0.10 2.29 5.89 85.63 0.50 2.80 16 12 N -0.60 -14.94 2.36 -851.11 -2.01 -16.95 16 13 C 0.08 1.41 10.01 127.77 1.28 2.69 16 14 C 0.54 15.31 7.46 87.66 0.65 15.97 16 15 O -0.58 -21.01 15.84 -3.04 -0.05 -21.06 16 16 C -0.20 -4.01 4.80 -11.54 -0.06 -4.07 16 17 C -0.16 -3.30 10.23 30.59 0.31 -2.99 16 18 C -0.14 -2.55 10.04 30.59 0.31 -2.25 16 19 C 0.12 5.54 3.74 86.22 0.32 5.86 16 20 N -0.61 -29.50 2.76 -676.04 -1.87 -31.37 16 21 C -0.24 -14.08 9.06 84.03 0.76 -13.32 16 22 H 0.06 3.99 6.37 -2.91 -0.02 3.97 16 23 C -0.04 -2.41 5.24 84.86 0.44 -1.96 16 24 N -0.96 -63.58 13.97 21.65 0.30 -63.28 16 25 Si 0.95 49.34 24.36 68.60 1.67 51.01 16 26 H -0.30 -15.44 6.71 99.48 0.67 -14.78 16 27 H -0.31 -16.19 7.11 99.48 0.71 -15.48 16 28 H -0.25 -12.02 6.48 99.48 0.64 -11.38 16 29 H 0.03 1.38 7.45 -2.39 -0.02 1.36 16 30 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.04 1.62 7.61 -2.39 -0.02 1.60 16 32 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.08 1.87 8.14 -2.39 -0.02 1.86 16 36 H 0.42 7.76 8.60 -92.71 -0.80 6.96 16 37 H 0.15 2.09 8.07 -2.38 -0.02 2.07 16 38 H 0.12 2.58 7.42 -2.39 -0.02 2.57 16 39 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.08 1.43 6.64 -2.39 -0.02 1.42 16 41 H 0.06 1.30 8.07 -2.39 -0.02 1.28 16 42 H 0.16 2.05 7.26 -2.39 -0.02 2.03 16 43 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.14 1.55 8.14 -2.38 -0.02 1.53 16 46 H 0.08 1.96 7.67 -2.39 -0.02 1.94 16 47 H 0.03 1.74 4.64 -2.39 -0.01 1.73 16 48 H 0.04 1.61 6.96 -2.39 -0.02 1.59 16 49 H 0.26 16.34 8.31 -92.71 -0.77 15.57 16 Total: -1.00 -91.08 383.93 2.19 -88.89 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: 0.05 Total: 22.22 kcal Atomic # 6 Polarization: 14.06 SS G_CDS: 6.39 Total: 20.45 kcal Atomic # 7 Polarization: -128.53 SS G_CDS: -5.82 Total: -134.35 kcal Atomic # 8 Polarization: -48.12 SS G_CDS: -0.10 Total: -48.22 kcal Atomic # 14 Polarization: 49.34 SS G_CDS: 1.67 Total: 51.01 kcal Total: -91.08 2.19 -88.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132097798.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.442 kcal (2) G-P(sol) polarization free energy of solvation -91.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds