Wall clock time and date at job start Fri Apr 10 2020 18:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.58834 * 2 1 4 4 C 1.53188 * 109.58460 * 239.71716 * 2 1 3 5 5 C 1.53041 * 109.31294 * 185.57886 * 4 2 1 6 6 C 1.53037 * 109.53563 * 61.36543 * 5 4 2 7 7 H 1.09001 * 109.52623 * 58.60558 * 6 5 4 8 8 N 1.46497 * 109.49839 * 178.68347 * 6 5 4 9 9 C 1.34780 * 120.00508 * 204.83591 * 8 6 5 10 10 O 1.21280 * 119.99457 * 0.02562 * 9 8 6 11 11 C 1.50702 * 120.00261 * 179.97438 * 9 8 6 12 12 N 1.46500 * 109.47117 * 180.02562 * 11 9 8 13 13 C 1.46495 * 120.00159 * 90.00227 * 12 11 9 14 14 C 1.34778 * 119.99977 * 270.00389 * 12 11 9 15 15 O 1.21282 * 119.99999 * 0.02562 * 14 12 11 16 16 C 1.50699 * 120.00064 * 179.97438 * 14 12 11 17 17 C 1.53003 * 117.49932 * 248.74934 * 16 14 12 18 18 C 1.52998 * 117.49913 * 180.08927 * 16 14 12 19 19 C 1.53196 * 109.31391 * 298.63434 * 6 5 4 20 20 N 1.46921 * 108.77231 * 54.63886 * 19 6 5 21 21 C 1.36934 * 120.63297 * 126.41971 * 20 19 6 22 22 H 1.08000 * 120.00146 * 208.99935 * 21 20 19 23 23 C 1.38811 * 120.00091 * 28.98664 * 21 20 19 24 24 N 1.31622 * 119.99871 * 15.04115 * 23 21 20 25 25 Si 1.86794 * 120.00350 * 195.03511 * 23 21 20 26 26 H 1.48500 * 109.47510 * 90.00202 * 25 23 21 27 27 H 1.48503 * 109.47700 * 210.00465 * 25 23 21 28 28 H 1.48503 * 109.47062 * 330.00290 * 25 23 21 29 29 H 1.09001 * 109.47485 * 180.28257 * 1 2 3 30 30 H 1.09002 * 109.47138 * 300.28412 * 1 2 3 31 31 H 1.09004 * 109.47082 * 60.27734 * 1 2 3 32 32 H 1.09004 * 109.49917 * 305.53401 * 4 2 1 33 33 H 1.09004 * 109.49700 * 65.62433 * 4 2 1 34 34 H 1.09005 * 109.45835 * 181.38142 * 5 4 2 35 35 H 1.08995 * 109.46069 * 301.34852 * 5 4 2 36 36 H 0.97003 * 120.00010 * 24.83729 * 8 6 5 37 37 H 1.08997 * 109.47088 * 300.00542 * 11 9 8 38 38 H 1.09001 * 109.46706 * 60.00557 * 11 9 8 39 39 H 1.08994 * 109.47160 * 89.99566 * 13 12 11 40 40 H 1.08996 * 109.47294 * 210.00568 * 13 12 11 41 41 H 1.09000 * 109.46966 * 330.00124 * 13 12 11 42 42 H 1.09000 * 115.54783 * 34.41698 * 16 14 12 43 43 H 1.09006 * 117.49846 * 359.97438 * 17 16 14 44 44 H 1.09000 * 117.50150 * 145.02194 * 17 16 14 45 45 H 1.09003 * 117.49732 * 214.97513 * 18 16 14 46 46 H 1.08997 * 117.49913 * 359.97438 * 18 16 14 47 47 H 1.09002 * 109.58367 * 294.84851 * 19 6 5 48 48 H 1.08997 * 109.58539 * 174.42692 * 19 6 5 49 49 H 0.97003 * 120.00166 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0435 -0.7278 -1.2463 5 6 3.5675 -0.8465 -1.1712 6 6 3.9568 -1.6658 0.0613 7 1 3.4986 -2.6531 0.0021 8 7 5.4141 -1.8056 0.1152 9 6 5.9676 -2.8475 0.7668 10 8 5.2592 -3.6696 1.3082 11 6 7.4667 -2.9916 0.8217 12 7 7.8142 -4.1953 1.5811 13 6 7.9616 -5.4793 0.8914 14 6 7.9982 -4.1213 2.9142 15 8 7.8757 -3.0584 3.4852 16 6 8.3550 -5.3596 3.6954 17 6 7.3040 -5.9143 4.6591 18 6 8.5487 -5.2107 5.2058 19 6 3.4650 -0.9487 1.3225 20 7 2.0225 -0.7011 1.1936 21 6 1.1537 -1.1154 2.1675 22 1 0.1359 -1.3694 1.9108 23 6 1.5812 -1.2091 3.4849 24 7 2.7045 -0.6314 3.8549 25 14 0.5623 -2.1549 4.7325 26 1 0.9962 -3.5750 4.7515 27 1 0.7533 -1.5609 6.0801 28 1 -0.8728 -2.0808 4.3578 29 1 -0.3634 -1.0276 0.0051 30 1 -0.3633 0.5182 0.8874 31 1 -0.3633 0.5095 -0.8925 32 1 1.6028 -1.7237 -1.2935 33 1 1.7659 -0.1641 -2.1370 34 1 3.9377 -1.3423 -2.0686 35 1 4.0061 0.1486 -1.0991 36 1 5.9807 -1.1483 -0.3181 37 1 7.8611 -3.0748 -0.1910 38 1 7.8981 -2.1171 1.3089 39 1 8.9962 -5.6034 0.5718 40 1 7.6910 -6.2889 1.5692 41 1 7.3070 -5.5009 0.0201 42 1 8.9892 -6.0773 3.1750 43 1 6.3545 -5.3833 4.7283 44 1 7.2470 -6.9969 4.7730 45 1 9.3100 -5.8308 5.6791 46 1 8.4184 -4.2170 5.6343 47 1 3.9903 0.0001 1.4316 48 1 3.6518 -1.5746 2.1951 49 1 3.0031 -0.6966 4.7755 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132097799.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:47 Heat of formation + Delta-G solvation = -17.435860 kcal Electronic energy + Delta-G solvation = -28922.121071 eV Core-core repulsion = 25078.970497 eV Total energy + Delta-G solvation = -3843.150575 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.29354 -39.11852 -37.57890 -36.19643 -35.31161 -34.27286 -32.75893 -30.94988 -29.82656 -28.84738 -26.66637 -25.86611 -24.90819 -23.55919 -22.45030 -22.20142 -20.81665 -20.00219 -19.29092 -18.83766 -17.52800 -16.99507 -16.51481 -16.17647 -15.38443 -15.21934 -15.04107 -14.49720 -14.26533 -13.98428 -13.80285 -13.73167 -13.32347 -13.18935 -12.96059 -12.73091 -12.64686 -12.34840 -12.31301 -11.88337 -11.80190 -11.56317 -11.36770 -11.07791 -10.82120 -10.67360 -10.63782 -10.54833 -10.47210 -10.34686 -10.21124 -9.90853 -9.79879 -9.75474 -9.50371 -9.39958 -8.58805 -8.45718 -8.34226 -6.54890 -5.65828 -3.11309 2.51439 2.83176 3.07462 3.47140 3.53272 3.54726 3.70060 3.86306 4.44662 4.59542 4.73880 4.84512 4.95791 5.02315 5.06786 5.09128 5.30952 5.38990 5.42055 5.45646 5.55287 5.57212 5.59480 5.62705 5.67395 5.72219 5.96310 6.01029 6.12453 6.13920 6.30234 6.31234 6.36923 6.42590 6.48936 6.55526 6.66371 6.79460 7.01707 7.08772 7.16840 7.31310 7.39822 7.84225 7.92106 7.98623 8.24125 8.57505 8.71590 9.31834 9.96265 10.51251 11.41750 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.011748 B = 0.004322 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.897604 B = 6476.684520 C = 8269.399054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.126 4.126 5 C -0.115 4.115 6 C 0.118 3.882 7 H 0.079 0.921 8 N -0.721 5.721 9 C 0.492 3.508 10 O -0.524 6.524 11 C 0.097 3.903 12 N -0.598 5.598 13 C 0.085 3.915 14 C 0.548 3.452 15 O -0.528 6.528 16 C -0.192 4.192 17 C -0.150 4.150 18 C -0.150 4.150 19 C 0.168 3.832 20 N -0.584 5.584 21 C -0.255 4.255 22 H 0.070 0.930 23 C 0.007 3.993 24 N -0.897 5.897 25 Si 0.899 3.101 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.279 1.279 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.037 0.963 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.058 0.942 36 H 0.391 0.609 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.122 0.878 43 H 0.104 0.896 44 H 0.103 0.897 45 H 0.101 0.899 46 H 0.108 0.892 47 H 0.016 0.984 48 H 0.095 0.905 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.178 -7.969 -9.486 18.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.013 3.987 7 H 0.097 0.903 8 N -0.372 5.372 9 C 0.276 3.724 10 O -0.399 6.399 11 C -0.030 4.030 12 N -0.331 5.331 13 C -0.058 4.058 14 C 0.336 3.664 15 O -0.404 6.404 16 C -0.213 4.213 17 C -0.187 4.187 18 C -0.187 4.187 19 C 0.041 3.959 20 N -0.307 5.307 21 C -0.385 4.385 22 H 0.088 0.912 23 C -0.193 4.193 24 N -0.541 5.541 25 Si 0.730 3.270 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.205 1.205 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.224 0.776 37 H 0.121 0.879 38 H 0.129 0.871 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.140 0.860 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.119 0.881 46 H 0.126 0.874 47 H 0.034 0.966 48 H 0.113 0.887 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 12.638 -7.995 -8.596 17.249 hybrid contribution -0.137 -0.201 0.270 0.363 sum 12.501 -8.196 -8.326 17.110 Atomic orbital electron populations 1.21801 0.96040 1.01391 1.00124 1.20478 0.93037 0.93528 0.87131 0.95832 1.22046 0.94361 1.01260 0.98909 1.21674 0.97368 0.99640 0.96670 1.21954 0.77889 1.00670 0.98201 0.90262 1.46053 1.08571 1.26782 1.55825 1.20983 0.90692 0.81889 0.78843 1.90734 1.63145 1.42235 1.43743 1.21308 0.93353 0.90421 0.97888 1.47226 1.69751 1.08988 1.07160 1.21765 1.00894 0.84900 0.98221 1.19684 0.75841 0.89502 0.81378 1.90739 1.50491 1.30466 1.68662 1.22138 1.06669 0.99103 0.93415 1.22977 0.94711 1.00666 1.00345 1.22971 0.99861 1.03348 0.92540 1.21082 0.83390 0.96920 0.94458 1.44031 1.02696 1.64631 1.19360 1.19129 0.94700 1.38504 0.86166 0.91223 1.25086 0.97694 0.99449 0.97040 1.69987 1.23125 1.44072 1.16903 0.86337 0.79667 0.80082 0.80954 1.21425 1.21800 1.20454 0.92812 0.92032 0.94385 0.92152 0.92739 0.93194 0.92303 0.77580 0.87901 0.87060 0.92635 0.90644 0.91026 0.85995 0.87778 0.87846 0.88057 0.87367 0.96636 0.88680 0.93669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 7.94 37.16 0.30 -2.32 16 2 C 0.16 3.47 3.50 -67.60 -0.24 3.23 16 3 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.18 5.37 -26.61 -0.14 -2.33 16 5 C -0.12 -1.89 5.35 -26.69 -0.14 -2.03 16 6 C 0.12 2.36 2.60 -67.81 -0.18 2.18 16 7 H 0.08 1.80 7.58 -51.93 -0.39 1.41 16 8 N -0.72 -11.91 5.08 -53.69 -0.27 -12.18 16 9 C 0.49 8.78 7.86 -10.98 -0.09 8.69 16 10 O -0.52 -11.97 16.09 5.56 0.09 -11.88 16 11 C 0.10 1.28 5.89 -5.19 -0.03 1.25 16 12 N -0.60 -8.10 2.36 -182.96 -0.43 -8.53 16 13 C 0.09 0.80 10.01 59.84 0.60 1.39 16 14 C 0.55 8.73 7.46 -10.99 -0.08 8.64 16 15 O -0.53 -10.76 15.84 5.56 0.09 -10.68 16 16 C -0.19 -2.30 4.79 -91.77 -0.44 -2.74 16 17 C -0.15 -1.81 10.24 -26.69 -0.27 -2.09 16 18 C -0.15 -1.72 10.05 -26.69 -0.27 -1.99 16 19 C 0.17 4.26 4.86 -3.71 -0.02 4.24 16 20 N -0.58 -15.03 2.99 -164.78 -0.49 -15.52 16 21 C -0.26 -7.22 8.61 -15.06 -0.13 -7.35 16 22 H 0.07 1.91 6.20 -52.49 -0.33 1.59 16 23 C 0.01 0.19 4.96 -17.43 -0.09 0.11 16 24 N -0.90 -27.82 11.14 55.49 0.62 -27.21 16 25 Si 0.90 23.20 29.58 -169.99 -5.03 18.17 16 26 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 27 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 28 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 29 H 0.05 1.05 7.40 -51.93 -0.38 0.67 16 30 H 0.06 1.28 7.66 -51.93 -0.40 0.88 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.39 4.94 8.60 -40.82 -0.35 4.59 16 37 H 0.10 0.88 8.07 -51.93 -0.42 0.47 16 38 H 0.11 1.51 7.42 -51.93 -0.39 1.12 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.67 6.64 -51.93 -0.34 0.32 16 41 H 0.07 0.66 8.07 -51.93 -0.42 0.24 16 42 H 0.12 1.05 7.27 -51.93 -0.38 0.68 16 43 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 44 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.11 1.48 7.67 -51.93 -0.40 1.09 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.10 2.88 6.06 -51.93 -0.31 2.57 16 49 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 390.41 15.07 5.88 5.88 Total: -1.00 -37.61 390.41 -9.06 -46.67 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -8.30 Total: 6.38 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: -1.22 Total: 8.89 kcal Atomic # 7 Polarization: -62.85 SS G_CDS: -0.58 Total: -63.43 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: 0.18 Total: -22.56 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -5.03 Total: 18.17 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.61 -9.06 -46.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132097799.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.236 kcal (2) G-P(sol) polarization free energy of solvation -37.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds