Wall clock time and date at job start Fri Apr 10 2020 18:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.58834 * 2 1 4 4 C 1.53188 * 109.58460 * 239.71716 * 2 1 3 5 5 C 1.53041 * 109.31294 * 185.57886 * 4 2 1 6 6 C 1.53037 * 109.53563 * 61.36543 * 5 4 2 7 7 H 1.09001 * 109.52623 * 58.60558 * 6 5 4 8 8 N 1.46497 * 109.49839 * 178.68347 * 6 5 4 9 9 C 1.34780 * 120.00508 * 204.83591 * 8 6 5 10 10 O 1.21280 * 119.99457 * 0.02562 * 9 8 6 11 11 C 1.50702 * 120.00261 * 179.97438 * 9 8 6 12 12 N 1.46500 * 109.47117 * 180.02562 * 11 9 8 13 13 C 1.46495 * 120.00159 * 90.00227 * 12 11 9 14 14 C 1.34778 * 119.99977 * 270.00389 * 12 11 9 15 15 O 1.21282 * 119.99999 * 0.02562 * 14 12 11 16 16 C 1.50699 * 120.00064 * 179.97438 * 14 12 11 17 17 C 1.53003 * 117.49932 * 248.74934 * 16 14 12 18 18 C 1.52998 * 117.49913 * 180.08927 * 16 14 12 19 19 C 1.53196 * 109.31391 * 298.63434 * 6 5 4 20 20 N 1.46921 * 108.77231 * 54.63886 * 19 6 5 21 21 C 1.36934 * 120.63297 * 126.41971 * 20 19 6 22 22 H 1.08000 * 120.00146 * 208.99935 * 21 20 19 23 23 C 1.38811 * 120.00091 * 28.98664 * 21 20 19 24 24 N 1.31622 * 119.99871 * 15.04115 * 23 21 20 25 25 Si 1.86794 * 120.00350 * 195.03511 * 23 21 20 26 26 H 1.48500 * 109.47510 * 90.00202 * 25 23 21 27 27 H 1.48503 * 109.47700 * 210.00465 * 25 23 21 28 28 H 1.48503 * 109.47062 * 330.00290 * 25 23 21 29 29 H 1.09001 * 109.47485 * 180.28257 * 1 2 3 30 30 H 1.09002 * 109.47138 * 300.28412 * 1 2 3 31 31 H 1.09004 * 109.47082 * 60.27734 * 1 2 3 32 32 H 1.09004 * 109.49917 * 305.53401 * 4 2 1 33 33 H 1.09004 * 109.49700 * 65.62433 * 4 2 1 34 34 H 1.09005 * 109.45835 * 181.38142 * 5 4 2 35 35 H 1.08995 * 109.46069 * 301.34852 * 5 4 2 36 36 H 0.97003 * 120.00010 * 24.83729 * 8 6 5 37 37 H 1.08997 * 109.47088 * 300.00542 * 11 9 8 38 38 H 1.09001 * 109.46706 * 60.00557 * 11 9 8 39 39 H 1.08994 * 109.47160 * 89.99566 * 13 12 11 40 40 H 1.08996 * 109.47294 * 210.00568 * 13 12 11 41 41 H 1.09000 * 109.46966 * 330.00124 * 13 12 11 42 42 H 1.09000 * 115.54783 * 34.41698 * 16 14 12 43 43 H 1.09006 * 117.49846 * 359.97438 * 17 16 14 44 44 H 1.09000 * 117.50150 * 145.02194 * 17 16 14 45 45 H 1.09003 * 117.49732 * 214.97513 * 18 16 14 46 46 H 1.08997 * 117.49913 * 359.97438 * 18 16 14 47 47 H 1.09002 * 109.58367 * 294.84851 * 19 6 5 48 48 H 1.08997 * 109.58539 * 174.42692 * 19 6 5 49 49 H 0.97003 * 120.00166 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0435 -0.7278 -1.2463 5 6 3.5675 -0.8465 -1.1712 6 6 3.9568 -1.6658 0.0613 7 1 3.4986 -2.6531 0.0021 8 7 5.4141 -1.8056 0.1152 9 6 5.9676 -2.8475 0.7668 10 8 5.2592 -3.6696 1.3082 11 6 7.4667 -2.9916 0.8217 12 7 7.8142 -4.1953 1.5811 13 6 7.9616 -5.4793 0.8914 14 6 7.9982 -4.1213 2.9142 15 8 7.8757 -3.0584 3.4852 16 6 8.3550 -5.3596 3.6954 17 6 7.3040 -5.9143 4.6591 18 6 8.5487 -5.2107 5.2058 19 6 3.4650 -0.9487 1.3225 20 7 2.0225 -0.7011 1.1936 21 6 1.1537 -1.1154 2.1675 22 1 0.1359 -1.3694 1.9108 23 6 1.5812 -1.2091 3.4849 24 7 2.7045 -0.6314 3.8549 25 14 0.5623 -2.1549 4.7325 26 1 0.9962 -3.5750 4.7515 27 1 0.7533 -1.5609 6.0801 28 1 -0.8728 -2.0808 4.3578 29 1 -0.3634 -1.0276 0.0051 30 1 -0.3633 0.5182 0.8874 31 1 -0.3633 0.5095 -0.8925 32 1 1.6028 -1.7237 -1.2935 33 1 1.7659 -0.1641 -2.1370 34 1 3.9377 -1.3423 -2.0686 35 1 4.0061 0.1486 -1.0991 36 1 5.9807 -1.1483 -0.3181 37 1 7.8611 -3.0748 -0.1910 38 1 7.8981 -2.1171 1.3089 39 1 8.9962 -5.6034 0.5718 40 1 7.6910 -6.2889 1.5692 41 1 7.3070 -5.5009 0.0201 42 1 8.9892 -6.0773 3.1750 43 1 6.3545 -5.3833 4.7283 44 1 7.2470 -6.9969 4.7730 45 1 9.3100 -5.8308 5.6791 46 1 8.4184 -4.2170 5.6343 47 1 3.9903 0.0001 1.4316 48 1 3.6518 -1.5746 2.1951 49 1 3.0031 -0.6966 4.7755 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132097799.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:46 Heat of formation + Delta-G solvation = -44.974014 kcal Electronic energy + Delta-G solvation = -28923.315215 eV Core-core repulsion = 25078.970497 eV Total energy + Delta-G solvation = -3844.344719 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.53303 -40.56839 -39.22255 -37.24204 -36.52959 -35.93272 -34.69080 -32.49281 -31.78770 -30.02576 -27.76891 -27.53396 -26.69543 -24.72213 -23.98492 -23.39934 -22.35222 -21.54048 -20.96332 -19.99621 -18.58834 -18.41043 -18.31276 -17.61701 -17.15064 -16.55214 -16.34717 -16.03020 -15.64555 -15.54267 -15.33516 -15.12760 -14.98830 -14.66259 -14.41476 -14.14284 -13.83921 -13.61074 -13.55377 -13.31087 -13.12684 -12.92817 -12.78050 -12.73067 -12.59435 -12.51830 -12.31146 -12.13276 -12.00295 -11.68986 -11.58138 -11.49770 -11.44665 -11.18283 -11.08396 -10.96226 -10.59206 -10.07962 -9.73488 -8.67265 -7.88873 -5.35952 1.31720 1.34430 1.39284 1.45944 1.65698 1.81824 2.36403 2.47691 2.88057 3.27354 3.48400 3.61513 3.80204 3.83516 3.90597 3.98726 4.07219 4.08589 4.18210 4.24207 4.27930 4.34413 4.37828 4.59186 4.66418 4.68908 4.73116 4.79024 4.82080 4.88080 4.92047 4.96569 4.98699 5.05352 5.15600 5.16884 5.28518 5.30575 5.37091 5.48661 5.52790 5.58767 5.65893 5.78986 6.25313 6.36054 6.62340 7.07743 7.11067 7.35100 7.86653 8.35121 9.15218 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.011748 B = 0.004322 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.897604 B = 6476.684520 C = 8269.399054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.152 3.848 3 H 0.020 0.980 4 C -0.118 4.118 5 C -0.105 4.105 6 C 0.134 3.866 7 H 0.049 0.951 8 N -0.708 5.708 9 C 0.484 3.516 10 O -0.583 6.583 11 C 0.102 3.898 12 N -0.598 5.598 13 C 0.077 3.923 14 C 0.529 3.471 15 O -0.591 6.591 16 C -0.187 4.187 17 C -0.156 4.156 18 C -0.146 4.146 19 C 0.181 3.819 20 N -0.604 5.604 21 C -0.249 4.249 22 H 0.078 0.922 23 C -0.058 4.058 24 N -0.935 5.935 25 Si 0.956 3.044 26 H -0.298 1.298 27 H -0.295 1.295 28 H -0.255 1.255 29 H 0.046 0.954 30 H 0.036 0.964 31 H 0.081 0.919 32 H 0.052 0.948 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.414 0.586 37 H 0.162 0.838 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.168 0.832 43 H 0.056 0.944 44 H 0.141 0.859 45 H 0.142 0.858 46 H 0.074 0.926 47 H -0.009 1.009 48 H 0.035 0.965 49 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.273 -9.292 -13.072 21.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.047 3.953 3 H 0.038 0.962 4 C -0.157 4.157 5 C -0.143 4.143 6 C 0.027 3.973 7 H 0.067 0.933 8 N -0.361 5.361 9 C 0.270 3.730 10 O -0.462 6.462 11 C -0.025 4.025 12 N -0.329 5.329 13 C -0.064 4.064 14 C 0.319 3.681 15 O -0.472 6.472 16 C -0.207 4.207 17 C -0.193 4.193 18 C -0.184 4.184 19 C 0.053 3.947 20 N -0.328 5.328 21 C -0.379 4.379 22 H 0.096 0.904 23 C -0.253 4.253 24 N -0.581 5.581 25 Si 0.785 3.215 26 H -0.226 1.226 27 H -0.222 1.222 28 H -0.179 1.179 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.116 0.884 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.251 0.749 37 H 0.179 0.821 38 H 0.124 0.876 39 H 0.115 0.885 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.186 0.814 43 H 0.075 0.925 44 H 0.158 0.842 45 H 0.160 0.840 46 H 0.092 0.908 47 H 0.009 0.991 48 H 0.054 0.946 49 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 13.736 -9.313 -12.281 20.646 hybrid contribution -0.516 0.260 1.310 1.432 sum 13.220 -9.053 -10.971 19.419 Atomic orbital electron populations 1.21736 0.94670 1.01163 1.01087 1.20832 0.94382 0.93325 0.86779 0.96207 1.21952 0.94704 1.00863 0.98179 1.21640 0.96999 0.99887 0.95801 1.21447 0.79612 0.98842 0.97384 0.93303 1.45885 1.07546 1.27151 1.55520 1.21973 0.92683 0.81043 0.77292 1.90709 1.64972 1.44475 1.46007 1.21463 0.89492 0.90614 1.00892 1.47481 1.68045 1.10615 1.06777 1.22095 1.03527 0.82810 0.97972 1.20541 0.75120 0.89996 0.82399 1.90704 1.53428 1.32955 1.70069 1.22312 1.06884 0.98114 0.93421 1.22967 0.92888 1.02209 1.01281 1.23035 1.00420 1.02252 0.92647 1.20736 0.83785 0.94949 0.95186 1.44351 1.02480 1.65596 1.20415 1.19515 0.95243 1.36479 0.86678 0.90433 1.25861 0.99044 1.01232 0.99197 1.70182 1.25201 1.46477 1.16271 0.85413 0.79559 0.77880 0.78653 1.22588 1.22195 1.17888 0.93516 0.94477 0.90058 0.92898 0.88371 0.89092 0.90978 0.74879 0.82052 0.87645 0.88528 0.90230 0.90756 0.81414 0.92511 0.84151 0.83981 0.90767 0.99104 0.94614 0.95011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.77 7.94 71.98 0.57 -4.19 16 2 C 0.15 6.23 3.50 44.97 0.16 6.38 16 3 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 4 C -0.12 -3.70 5.37 30.67 0.16 -3.53 16 5 C -0.11 -3.12 5.35 30.62 0.16 -2.96 16 6 C 0.13 5.38 2.60 45.07 0.12 5.49 16 7 H 0.05 2.28 7.58 -2.39 -0.02 2.27 16 8 N -0.71 -23.23 5.08 -442.16 -2.25 -25.48 16 9 C 0.48 17.59 7.86 87.66 0.69 18.28 16 10 O -0.58 -28.12 16.09 -3.03 -0.05 -28.17 16 11 C 0.10 2.58 5.89 85.63 0.50 3.08 16 12 N -0.60 -15.66 2.36 -851.16 -2.01 -17.67 16 13 C 0.08 1.22 10.01 127.77 1.28 2.50 16 14 C 0.53 17.31 7.46 87.66 0.65 17.96 16 15 O -0.59 -25.93 15.84 -3.04 -0.05 -25.98 16 16 C -0.19 -4.31 4.79 -11.54 -0.06 -4.37 16 17 C -0.16 -3.84 10.24 30.62 0.31 -3.53 16 18 C -0.15 -3.35 10.05 30.62 0.31 -3.04 16 19 C 0.18 9.63 4.86 86.36 0.42 10.05 16 20 N -0.60 -32.04 2.99 -675.24 -2.02 -34.06 16 21 C -0.25 -14.55 8.61 84.03 0.72 -13.83 16 22 H 0.08 4.33 6.20 -2.91 -0.02 4.31 16 23 C -0.06 -3.62 4.96 84.86 0.42 -3.20 16 24 N -0.93 -62.13 11.14 21.65 0.24 -61.89 16 25 Si 0.96 50.02 29.58 68.60 2.03 52.05 16 26 H -0.30 -15.95 7.11 99.48 0.71 -15.25 16 27 H -0.30 -15.47 7.11 99.48 0.71 -14.77 16 28 H -0.25 -12.18 7.11 99.48 0.71 -11.48 16 29 H 0.05 1.76 7.40 -2.39 -0.02 1.75 16 30 H 0.04 1.52 7.66 -2.39 -0.02 1.50 16 31 H 0.08 2.28 8.14 -2.38 -0.02 2.27 16 32 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 33 H 0.10 2.32 8.14 -2.38 -0.02 2.30 16 34 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 35 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.41 9.70 8.60 -92.71 -0.80 8.90 16 37 H 0.16 2.14 8.07 -2.39 -0.02 2.12 16 38 H 0.11 2.86 7.42 -2.39 -0.02 2.84 16 39 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.08 1.20 6.64 -2.39 -0.02 1.19 16 41 H 0.07 1.16 8.07 -2.39 -0.02 1.14 16 42 H 0.17 2.26 7.27 -2.39 -0.02 2.25 16 43 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 44 H 0.14 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.14 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.07 2.22 7.67 -2.39 -0.02 2.20 16 47 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 48 H 0.04 2.33 6.06 -2.39 -0.01 2.31 16 49 H 0.24 15.91 8.31 -92.71 -0.77 15.14 16 Total: -1.00 -94.45 390.41 2.47 -91.97 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: 0.14 Total: 24.11 kcal Atomic # 6 Polarization: 18.67 SS G_CDS: 6.43 Total: 25.10 kcal Atomic # 7 Polarization: -133.05 SS G_CDS: -6.04 Total: -139.09 kcal Atomic # 8 Polarization: -54.05 SS G_CDS: -0.10 Total: -54.15 kcal Atomic # 14 Polarization: 50.02 SS G_CDS: 2.03 Total: 52.05 kcal Total: -94.45 2.47 -91.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132097799.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.000 kcal (2) G-P(sol) polarization free energy of solvation -94.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds