Wall clock time and date at job start Fri Apr 10 2020 18:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34784 * 119.99792 * 2 1 4 4 O 1.21285 * 119.99984 * 4.84312 * 3 2 1 5 5 C 1.50696 * 119.99911 * 184.84337 * 3 2 1 6 6 C 1.50695 * 112.85033 * 296.56892 * 5 3 2 7 7 O 1.21282 * 120.00356 * 114.25520 * 6 5 3 8 8 N 1.34781 * 119.99692 * 294.25189 * 6 5 3 9 9 C 1.46506 * 119.99802 * 184.27526 * 8 6 5 10 10 H 1.08998 * 109.49834 * 325.07137 * 9 8 6 11 11 C 1.53039 * 109.49641 * 205.00316 * 9 8 6 12 12 C 1.53040 * 109.53505 * 178.65324 * 11 9 8 13 13 C 1.53193 * 109.31569 * 61.36518 * 12 11 9 14 14 H 1.08998 * 109.70772 * 65.21961 * 13 12 11 15 15 C 1.53003 * 109.58936 * 185.57961 * 13 12 11 16 16 N 1.46927 * 108.77362 * 305.36142 * 13 12 11 17 17 C 1.36934 * 120.63153 * 233.58356 * 16 13 12 18 18 H 1.07998 * 119.99889 * 39.06026 * 17 16 13 19 19 C 1.38811 * 119.99984 * 219.05548 * 17 16 13 20 20 N 1.31619 * 120.00328 * 2.56654 * 19 17 16 21 21 Si 1.86805 * 119.99990 * 182.84128 * 19 17 16 22 22 H 1.48500 * 109.47152 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46705 * 120.00060 * 21 19 17 24 24 H 1.48495 * 109.47121 * 240.00057 * 21 19 17 25 25 C 1.46929 * 118.73674 * 53.86250 * 16 13 12 26 26 C 1.53782 * 113.61469 * 67.76407 * 5 3 2 27 27 C 1.53955 * 87.01848 * 89.22738 * 26 5 3 28 28 C 1.53782 * 113.61381 * 165.37209 * 5 3 2 29 29 H 1.09002 * 109.47290 * 299.99932 * 1 2 3 30 30 H 1.09003 * 109.47618 * 59.99694 * 1 2 3 31 31 H 1.09002 * 109.47437 * 180.02562 * 1 2 3 32 32 H 0.96991 * 120.00224 * 179.97438 * 2 1 3 33 33 H 0.96990 * 120.00392 * 4.28072 * 8 6 5 34 34 H 1.08997 * 109.46091 * 58.63325 * 11 9 8 35 35 H 1.08995 * 109.44711 * 298.66055 * 11 9 8 36 36 H 1.09001 * 109.50095 * 301.41288 * 12 11 9 37 37 H 1.08998 * 109.52591 * 181.33120 * 12 11 9 38 38 H 1.08998 * 109.47081 * 179.28956 * 15 13 12 39 39 H 1.09002 * 109.46707 * 299.28845 * 15 13 12 40 40 H 1.09002 * 109.46988 * 59.28215 * 15 13 12 41 41 H 0.96997 * 120.00423 * 179.97438 * 20 19 17 42 42 H 1.08997 * 109.59040 * 65.92593 * 25 16 13 43 43 H 1.09002 * 109.58540 * 186.35203 * 25 16 13 44 44 H 1.08997 * 113.61364 * 203.74804 * 26 5 3 45 45 H 1.08997 * 113.61622 * 334.65378 * 26 5 3 46 46 H 1.09002 * 113.54047 * 270.81346 * 27 26 5 47 47 H 1.08998 * 113.74603 * 139.94243 * 27 26 5 48 48 H 1.09009 * 113.61304 * 25.34755 * 28 5 3 49 49 H 1.08998 * 113.61506 * 156.25087 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5356 2.2157 0.0887 5 6 3.6418 1.1696 -0.1102 6 6 4.3152 0.4976 1.0584 7 8 4.9394 -0.5287 0.8906 8 7 4.2241 1.0370 2.2902 9 6 4.9553 0.4366 3.4088 10 1 4.9834 -0.6460 3.2858 11 6 4.2525 0.7834 4.7233 12 6 4.9965 0.1288 5.8895 13 6 6.4270 0.6737 5.9477 14 1 6.4059 1.7373 6.1851 15 6 7.2182 -0.0759 7.0215 16 7 7.0628 0.4739 4.6382 17 6 8.2640 -0.1758 4.5377 18 1 8.4669 -1.0350 5.1598 19 6 9.2208 0.2699 3.6361 20 7 8.9937 1.3467 2.9141 21 14 10.8275 -0.6630 3.4420 22 1 10.8339 -1.8333 4.3561 23 1 10.9619 -1.1307 2.0389 24 1 11.9636 0.2330 3.7762 25 6 6.3881 0.9899 3.4393 26 6 4.1599 0.6929 -1.4773 27 6 4.0731 2.1612 -1.9322 28 6 4.2322 2.5478 -0.4523 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.9499 -0.8399 0.0004 33 1 3.6743 1.8227 2.4361 34 1 3.2268 0.4157 4.6947 35 1 4.2470 1.8650 4.8575 36 1 5.0242 -0.9510 5.7432 37 1 4.4823 0.3563 6.8233 38 1 8.2391 0.3046 7.0526 39 1 6.7450 0.0735 7.9921 40 1 7.2339 -1.1398 6.7850 41 1 9.6624 1.6583 2.2844 42 1 6.3615 2.0790 3.4752 43 1 6.9260 0.6647 2.5488 44 1 5.1780 0.3047 -1.4472 45 1 3.4689 0.0315 -1.9998 46 1 3.1038 2.4303 -2.3520 47 1 4.9078 2.4769 -2.5580 48 1 3.5992 3.3816 -0.1483 49 1 5.2700 2.6676 -0.1414 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132448219.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:11 Heat of formation + Delta-G solvation = -37.841033 kcal Electronic energy + Delta-G solvation = -29368.652837 eV Core-core repulsion = 25524.617427 eV Total energy + Delta-G solvation = -3844.035409 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.15928 -39.01946 -37.80906 -36.84655 -34.79868 -34.37653 -32.78927 -30.77340 -29.89157 -28.45796 -26.55397 -25.62102 -25.49591 -24.72622 -22.27865 -21.73736 -21.17984 -20.21290 -19.48535 -19.26829 -17.75506 -16.51072 -16.31793 -16.13172 -15.62944 -15.36847 -15.05892 -14.77980 -14.24240 -14.15322 -13.79556 -13.74904 -13.33240 -13.18872 -13.02646 -12.77269 -12.57766 -12.46154 -12.39265 -12.09543 -11.84264 -11.40649 -11.31564 -11.08427 -11.04391 -10.85791 -10.78900 -10.53481 -10.48586 -10.40097 -10.24084 -10.04952 -9.94575 -9.75682 -9.44700 -9.38776 -9.24617 -8.56961 -8.39307 -6.46167 -5.75800 -3.31559 2.34200 2.75750 3.06899 3.38735 3.45408 3.47213 3.48684 4.38466 4.47200 4.50786 4.55216 4.72206 4.87802 5.00414 5.24904 5.32269 5.36811 5.37987 5.52687 5.54353 5.56653 5.61082 5.69523 5.79117 5.86564 5.94789 5.98578 5.99625 6.13091 6.16157 6.29364 6.31196 6.32685 6.42165 6.47801 6.51679 6.65118 6.75338 6.93212 7.08734 7.16717 7.21245 7.32566 7.74085 7.84550 7.87979 7.98092 8.53230 8.57761 9.26621 9.85765 10.47378 11.31739 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.014163 B = 0.004132 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.442998 B = 6774.932477 C = 8036.376499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.731 5.731 3 C 0.548 3.452 4 O -0.529 6.529 5 C -0.140 4.140 6 C 0.531 3.469 7 O -0.525 6.525 8 N -0.713 5.713 9 C 0.114 3.886 10 H 0.082 0.918 11 C -0.116 4.116 12 C -0.125 4.125 13 C 0.165 3.835 14 H 0.025 0.975 15 C -0.134 4.134 16 N -0.583 5.583 17 C -0.255 4.255 18 H 0.065 0.935 19 C 0.015 3.985 20 N -0.899 5.899 21 Si 0.900 3.100 22 H -0.276 1.276 23 H -0.289 1.289 24 H -0.289 1.289 25 C 0.173 3.827 26 C -0.101 4.101 27 C -0.142 4.142 28 C -0.108 4.108 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.407 0.593 33 H 0.394 0.606 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.061 0.939 39 H 0.036 0.964 40 H 0.052 0.948 41 H 0.253 0.747 42 H 0.019 0.981 43 H 0.088 0.912 44 H 0.105 0.895 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.089 0.911 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.314 -0.591 -5.217 16.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.382 5.382 3 C 0.333 3.667 4 O -0.405 6.405 5 C -0.146 4.146 6 C 0.315 3.685 7 O -0.401 6.401 8 N -0.362 5.362 9 C 0.009 3.991 10 H 0.100 0.900 11 C -0.154 4.154 12 C -0.165 4.165 13 C 0.058 3.942 14 H 0.043 0.957 15 C -0.192 4.192 16 N -0.307 5.307 17 C -0.385 4.385 18 H 0.083 0.917 19 C -0.185 4.185 20 N -0.542 5.542 21 Si 0.729 3.271 22 H -0.201 1.201 23 H -0.216 1.216 24 H -0.216 1.216 25 C 0.046 3.954 26 C -0.139 4.139 27 C -0.179 4.179 28 C -0.146 4.146 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.241 0.759 33 H 0.227 0.773 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.055 0.945 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.037 0.963 43 H 0.107 0.893 44 H 0.124 0.876 45 H 0.091 0.909 46 H 0.100 0.900 47 H 0.096 0.904 48 H 0.107 0.893 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -15.178 -0.513 -5.384 16.112 hybrid contribution 0.723 -0.427 -0.065 0.842 sum -14.455 -0.939 -5.449 15.476 Atomic orbital electron populations 1.21559 0.79276 1.02388 1.02348 1.45758 1.07858 1.08927 1.75678 1.19600 0.87944 0.83728 0.75470 1.90696 1.69613 1.31377 1.48830 1.22392 0.92802 1.02135 0.97287 1.19690 0.81023 0.84578 0.83256 1.90744 1.42001 1.23306 1.84050 1.46116 1.49394 1.32215 1.08510 1.22178 0.94842 0.98998 0.83092 0.89964 1.21669 0.97942 1.00645 0.95176 1.22042 0.97881 1.00468 0.96124 1.20519 0.90190 0.95905 0.87551 0.95746 1.21774 1.00773 1.00623 0.96002 1.43947 1.21038 1.66734 0.98946 1.19074 0.90388 1.07265 1.21734 0.91740 1.25379 0.97555 0.95798 0.99783 1.69939 1.34377 1.23452 1.26455 0.86267 0.83917 0.79230 0.77662 1.20128 1.21560 1.21578 1.21139 0.86887 0.94986 0.92380 1.22855 1.03141 0.97049 0.90879 1.22902 1.02532 0.95846 0.96655 1.22845 1.02104 0.93709 0.95975 0.92049 0.92172 0.90527 0.75908 0.77295 0.93252 0.92249 0.92167 0.92737 0.91949 0.94476 0.92941 0.93689 0.96338 0.89337 0.87639 0.90893 0.90049 0.90365 0.89264 0.88223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.72 10.71 59.84 0.64 1.36 16 2 N -0.73 -7.70 5.70 -67.08 -0.38 -8.09 16 3 C 0.55 7.20 6.45 -10.98 -0.07 7.13 16 4 O -0.53 -8.18 15.93 5.55 0.09 -8.09 16 5 C -0.14 -1.90 1.03 -156.00 -0.16 -2.06 16 6 C 0.53 9.01 6.69 -10.99 -0.07 8.94 16 7 O -0.53 -10.83 15.79 5.56 0.09 -10.74 16 8 N -0.71 -11.87 5.08 -53.47 -0.27 -12.14 16 9 C 0.11 2.20 2.65 -67.58 -0.18 2.02 16 10 H 0.08 1.79 7.52 -51.93 -0.39 1.40 16 11 C -0.12 -1.92 5.35 -26.69 -0.14 -2.06 16 12 C -0.13 -2.15 5.37 -26.61 -0.14 -2.29 16 13 C 0.16 3.39 3.49 -67.60 -0.24 3.16 16 14 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 15 C -0.13 -2.54 8.04 37.16 0.30 -2.24 16 16 N -0.58 -14.43 2.95 -164.51 -0.49 -14.91 16 17 C -0.25 -6.91 8.29 -15.06 -0.12 -7.04 16 18 H 0.07 1.73 6.53 -52.49 -0.34 1.38 16 19 C 0.01 0.41 5.18 -17.43 -0.09 0.32 16 20 N -0.90 -26.15 11.19 55.49 0.62 -25.53 16 21 Si 0.90 21.93 29.55 -169.99 -5.02 16.90 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 C 0.17 4.14 4.81 -3.48 -0.02 4.12 16 26 C -0.10 -1.23 6.90 -25.83 -0.18 -1.41 16 27 C -0.14 -1.58 7.81 -25.83 -0.20 -1.78 16 28 C -0.11 -1.41 7.08 -25.92 -0.18 -1.59 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.41 3.94 8.83 -40.82 -0.36 3.58 16 33 H 0.39 5.81 8.61 -40.82 -0.35 5.46 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 1.28 7.68 -51.93 -0.40 0.88 16 39 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.05 1.01 7.42 -51.93 -0.39 0.62 16 41 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.09 2.48 6.44 -51.93 -0.33 2.15 16 44 H 0.11 1.45 7.72 -51.93 -0.40 1.04 16 45 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 46 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.09 1.16 7.34 -51.92 -0.38 0.78 16 49 H 0.10 1.40 8.09 -51.93 -0.42 0.98 16 LS Contribution 387.66 15.07 5.84 5.84 Total: -1.00 -32.39 387.66 -8.78 -41.17 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -8.39 Total: 9.01 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: -0.86 Total: 6.57 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: -0.52 Total: -60.67 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: 0.18 Total: -18.83 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.39 -8.78 -41.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132448219.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.328 kcal (2) G-P(sol) polarization free energy of solvation -32.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds