Wall clock time and date at job start Fri Apr 10 2020 18:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34784 * 119.99792 * 2 1 4 4 O 1.21285 * 119.99984 * 4.84312 * 3 2 1 5 5 C 1.50696 * 119.99911 * 184.84337 * 3 2 1 6 6 C 1.50695 * 112.85033 * 296.56892 * 5 3 2 7 7 O 1.21282 * 120.00356 * 114.25520 * 6 5 3 8 8 N 1.34781 * 119.99692 * 294.25189 * 6 5 3 9 9 C 1.46506 * 119.99802 * 184.27526 * 8 6 5 10 10 H 1.08998 * 109.49834 * 325.07137 * 9 8 6 11 11 C 1.53039 * 109.49641 * 205.00316 * 9 8 6 12 12 C 1.53040 * 109.53505 * 178.65324 * 11 9 8 13 13 C 1.53193 * 109.31569 * 61.36518 * 12 11 9 14 14 H 1.08998 * 109.70772 * 65.21961 * 13 12 11 15 15 C 1.53003 * 109.58936 * 185.57961 * 13 12 11 16 16 N 1.46927 * 108.77362 * 305.36142 * 13 12 11 17 17 C 1.36934 * 120.63153 * 233.58356 * 16 13 12 18 18 H 1.07998 * 119.99889 * 39.06026 * 17 16 13 19 19 C 1.38811 * 119.99984 * 219.05548 * 17 16 13 20 20 N 1.31619 * 120.00328 * 2.56654 * 19 17 16 21 21 Si 1.86805 * 119.99990 * 182.84128 * 19 17 16 22 22 H 1.48500 * 109.47152 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46705 * 120.00060 * 21 19 17 24 24 H 1.48495 * 109.47121 * 240.00057 * 21 19 17 25 25 C 1.46929 * 118.73674 * 53.86250 * 16 13 12 26 26 C 1.53782 * 113.61469 * 67.76407 * 5 3 2 27 27 C 1.53955 * 87.01848 * 89.22738 * 26 5 3 28 28 C 1.53782 * 113.61381 * 165.37209 * 5 3 2 29 29 H 1.09002 * 109.47290 * 299.99932 * 1 2 3 30 30 H 1.09003 * 109.47618 * 59.99694 * 1 2 3 31 31 H 1.09002 * 109.47437 * 180.02562 * 1 2 3 32 32 H 0.96991 * 120.00224 * 179.97438 * 2 1 3 33 33 H 0.96990 * 120.00392 * 4.28072 * 8 6 5 34 34 H 1.08997 * 109.46091 * 58.63325 * 11 9 8 35 35 H 1.08995 * 109.44711 * 298.66055 * 11 9 8 36 36 H 1.09001 * 109.50095 * 301.41288 * 12 11 9 37 37 H 1.08998 * 109.52591 * 181.33120 * 12 11 9 38 38 H 1.08998 * 109.47081 * 179.28956 * 15 13 12 39 39 H 1.09002 * 109.46707 * 299.28845 * 15 13 12 40 40 H 1.09002 * 109.46988 * 59.28215 * 15 13 12 41 41 H 0.96997 * 120.00423 * 179.97438 * 20 19 17 42 42 H 1.08997 * 109.59040 * 65.92593 * 25 16 13 43 43 H 1.09002 * 109.58540 * 186.35203 * 25 16 13 44 44 H 1.08997 * 113.61364 * 203.74804 * 26 5 3 45 45 H 1.08997 * 113.61622 * 334.65378 * 26 5 3 46 46 H 1.09002 * 113.54047 * 270.81346 * 27 26 5 47 47 H 1.08998 * 113.74603 * 139.94243 * 27 26 5 48 48 H 1.09009 * 113.61304 * 25.34755 * 28 5 3 49 49 H 1.08998 * 113.61506 * 156.25087 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5356 2.2157 0.0887 5 6 3.6418 1.1696 -0.1102 6 6 4.3152 0.4976 1.0584 7 8 4.9394 -0.5287 0.8906 8 7 4.2241 1.0370 2.2902 9 6 4.9553 0.4366 3.4088 10 1 4.9834 -0.6460 3.2858 11 6 4.2525 0.7834 4.7233 12 6 4.9965 0.1288 5.8895 13 6 6.4270 0.6737 5.9477 14 1 6.4059 1.7373 6.1851 15 6 7.2182 -0.0759 7.0215 16 7 7.0628 0.4739 4.6382 17 6 8.2640 -0.1758 4.5377 18 1 8.4669 -1.0350 5.1598 19 6 9.2208 0.2699 3.6361 20 7 8.9937 1.3467 2.9141 21 14 10.8275 -0.6630 3.4420 22 1 10.8339 -1.8333 4.3561 23 1 10.9619 -1.1307 2.0389 24 1 11.9636 0.2330 3.7762 25 6 6.3881 0.9899 3.4393 26 6 4.1599 0.6929 -1.4773 27 6 4.0731 2.1612 -1.9322 28 6 4.2322 2.5478 -0.4523 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.9499 -0.8399 0.0004 33 1 3.6743 1.8227 2.4361 34 1 3.2268 0.4157 4.6947 35 1 4.2470 1.8650 4.8575 36 1 5.0242 -0.9510 5.7432 37 1 4.4823 0.3563 6.8233 38 1 8.2391 0.3046 7.0526 39 1 6.7450 0.0735 7.9921 40 1 7.2339 -1.1398 6.7850 41 1 9.6624 1.6583 2.2844 42 1 6.3615 2.0790 3.4752 43 1 6.9260 0.6647 2.5488 44 1 5.1780 0.3047 -1.4472 45 1 3.4689 0.0315 -1.9998 46 1 3.1038 2.4303 -2.3520 47 1 4.9078 2.4769 -2.5580 48 1 3.5992 3.3816 -0.1483 49 1 5.2700 2.6676 -0.1414 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132448219.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:10 Heat of formation + Delta-G solvation = -60.884253 kcal Electronic energy + Delta-G solvation = -29369.652066 eV Core-core repulsion = 25524.617427 eV Total energy + Delta-G solvation = -3845.034638 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.31224 -40.39325 -39.26927 -38.07296 -36.03853 -35.68755 -34.64406 -32.31310 -31.77750 -29.47486 -27.85723 -27.23829 -26.53743 -26.23604 -24.02456 -22.85994 -22.46856 -21.72339 -21.06875 -20.38914 -19.05126 -18.32359 -17.50266 -17.32309 -17.05222 -16.89410 -16.27841 -15.92187 -15.71588 -15.64161 -15.38058 -15.17294 -14.97667 -14.47804 -14.40304 -14.15373 -13.87570 -13.57805 -13.52576 -13.24521 -13.06212 -12.96793 -12.77168 -12.72187 -12.57855 -12.49184 -12.40107 -12.09854 -12.02422 -11.95575 -11.65556 -11.51626 -11.41578 -11.16506 -11.08947 -10.70106 -10.55488 -10.23332 -10.09568 -8.48183 -7.85265 -5.44283 1.25965 1.41614 1.44192 1.46850 1.53687 2.07453 2.12760 2.49513 3.30010 3.31496 3.39470 3.56872 3.62016 3.72951 3.77459 3.95447 4.06904 4.23461 4.31955 4.38803 4.45771 4.60187 4.61301 4.62215 4.70684 4.74558 4.80164 4.87971 4.89240 4.91551 4.96941 4.98225 5.01052 5.05146 5.17274 5.27593 5.30299 5.31971 5.32337 5.43002 5.56179 5.59763 5.71214 5.77672 6.29523 6.44436 6.51796 6.99336 7.15004 7.20722 7.87031 8.42387 9.19020 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.014163 B = 0.004132 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.442998 B = 6774.932477 C = 8036.376499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.721 5.721 3 C 0.551 3.449 4 O -0.552 6.552 5 C -0.136 4.136 6 C 0.530 3.470 7 O -0.566 6.566 8 N -0.706 5.706 9 C 0.130 3.870 10 H 0.058 0.942 11 C -0.109 4.109 12 C -0.116 4.116 13 C 0.154 3.846 14 H 0.018 0.982 15 C -0.127 4.127 16 N -0.603 5.603 17 C -0.255 4.255 18 H 0.067 0.933 19 C -0.043 4.043 20 N -0.932 5.932 21 Si 0.959 3.041 22 H -0.263 1.263 23 H -0.296 1.296 24 H -0.288 1.288 25 C 0.187 3.813 26 C -0.100 4.100 27 C -0.127 4.127 28 C -0.113 4.113 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.108 0.892 32 H 0.412 0.588 33 H 0.406 0.594 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.093 0.907 38 H 0.038 0.962 39 H 0.076 0.924 40 H 0.045 0.955 41 H 0.247 0.753 42 H -0.004 1.004 43 H 0.039 0.961 44 H 0.085 0.915 45 H 0.094 0.906 46 H 0.093 0.907 47 H 0.091 0.909 48 H 0.091 0.909 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.673 -1.237 -4.549 18.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.372 5.372 3 C 0.335 3.665 4 O -0.430 6.430 5 C -0.143 4.143 6 C 0.316 3.684 7 O -0.444 6.444 8 N -0.356 5.356 9 C 0.024 3.976 10 H 0.076 0.924 11 C -0.147 4.147 12 C -0.156 4.156 13 C 0.049 3.951 14 H 0.036 0.964 15 C -0.184 4.184 16 N -0.327 5.327 17 C -0.386 4.386 18 H 0.085 0.915 19 C -0.239 4.239 20 N -0.577 5.577 21 Si 0.787 3.213 22 H -0.187 1.187 23 H -0.223 1.223 24 H -0.215 1.215 25 C 0.060 3.940 26 C -0.138 4.138 27 C -0.164 4.164 28 C -0.151 4.151 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.127 0.873 32 H 0.247 0.753 33 H 0.241 0.759 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.112 0.888 38 H 0.057 0.943 39 H 0.095 0.905 40 H 0.065 0.935 41 H 0.056 0.944 42 H 0.014 0.986 43 H 0.057 0.943 44 H 0.104 0.896 45 H 0.112 0.888 46 H 0.112 0.888 47 H 0.109 0.891 48 H 0.109 0.891 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.581 -1.173 -4.686 18.233 hybrid contribution 1.427 -0.237 -0.236 1.465 sum -16.154 -1.410 -4.922 16.946 Atomic orbital electron populations 1.21776 0.77452 1.04504 1.02167 1.45794 1.09036 1.08255 1.74109 1.19384 0.87311 0.84165 0.75597 1.90689 1.69762 1.32270 1.50312 1.22421 0.93515 1.02142 0.96176 1.20281 0.80277 0.83984 0.83903 1.90722 1.43751 1.25257 1.84670 1.46000 1.48987 1.32494 1.08092 1.21702 0.92893 0.97230 0.85776 0.92378 1.21641 0.98998 1.01304 0.92728 1.21940 0.95599 0.99862 0.98160 1.20806 0.92429 0.96080 0.85826 0.96402 1.21700 0.99592 0.99669 0.97449 1.44232 1.21008 1.66644 1.00825 1.19362 0.91180 1.07171 1.20884 0.91549 1.26096 1.00652 0.96925 1.00223 1.70109 1.35002 1.25199 1.27366 0.85332 0.80372 0.78439 0.77163 1.18706 1.22342 1.21450 1.20786 0.89207 0.93482 0.90569 1.22843 1.02468 0.98288 0.90206 1.22855 1.03700 0.94478 0.95352 1.22832 1.00979 0.93473 0.97773 0.92646 0.91894 0.87345 0.75326 0.75868 0.90052 0.91390 0.92694 0.88818 0.94325 0.90488 0.93549 0.94412 0.98593 0.94251 0.89624 0.88771 0.88802 0.89077 0.89080 0.90052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.15 10.71 127.77 1.37 2.52 16 2 N -0.72 -13.76 5.70 -484.52 -2.76 -16.52 16 3 C 0.55 13.73 6.45 87.65 0.57 14.29 16 4 O -0.55 -16.24 15.93 -3.04 -0.05 -16.29 16 5 C -0.14 -3.68 1.03 -53.15 -0.05 -3.73 16 6 C 0.53 18.38 6.69 87.65 0.59 18.96 16 7 O -0.57 -24.23 15.79 -3.04 -0.05 -24.28 16 8 N -0.71 -23.69 5.08 -441.46 -2.24 -25.93 16 9 C 0.13 5.07 2.65 45.21 0.12 5.19 16 10 H 0.06 2.58 7.52 -2.39 -0.02 2.56 16 11 C -0.11 -3.34 5.35 30.62 0.16 -3.17 16 12 C -0.12 -3.67 5.37 30.67 0.16 -3.50 16 13 C 0.15 6.19 3.49 44.98 0.16 6.35 16 14 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 15 C -0.13 -4.61 8.04 71.98 0.58 -4.03 16 16 N -0.60 -30.51 2.95 -674.38 -1.99 -32.50 16 17 C -0.26 -14.21 8.29 84.03 0.70 -13.52 16 18 H 0.07 3.60 6.53 -2.91 -0.02 3.59 16 19 C -0.04 -2.47 5.18 84.86 0.44 -2.03 16 20 N -0.93 -56.83 11.19 21.65 0.24 -56.59 16 21 Si 0.96 46.40 29.55 68.60 2.03 48.42 16 22 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 23 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 24 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 25 C 0.19 9.32 4.81 86.51 0.42 9.74 16 26 C -0.10 -2.39 6.90 31.18 0.22 -2.17 16 27 C -0.13 -2.67 7.81 31.18 0.24 -2.43 16 28 C -0.11 -2.94 7.08 31.12 0.22 -2.72 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.41 7.20 8.83 -92.72 -0.82 6.38 16 33 H 0.41 11.75 8.61 -92.72 -0.80 10.95 16 34 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.04 1.56 7.68 -2.39 -0.02 1.54 16 39 H 0.08 2.16 8.14 -2.39 -0.02 2.15 16 40 H 0.05 1.72 7.42 -2.39 -0.02 1.70 16 41 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 42 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 43 H 0.04 2.34 6.44 -2.39 -0.02 2.32 16 44 H 0.09 2.42 7.72 -2.39 -0.02 2.40 16 45 H 0.09 1.82 8.09 -2.39 -0.02 1.80 16 46 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.09 2.34 7.34 -2.38 -0.02 2.33 16 49 H 0.08 2.41 8.09 -2.39 -0.02 2.39 16 Total: -1.00 -74.00 387.66 0.40 -73.61 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: -0.66 Total: 30.34 kcal Atomic # 6 Polarization: 13.85 SS G_CDS: 5.88 Total: 19.74 kcal Atomic # 7 Polarization: -124.78 SS G_CDS: -6.75 Total: -131.53 kcal Atomic # 8 Polarization: -40.47 SS G_CDS: -0.10 Total: -40.57 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.42 kcal Total: -74.00 0.40 -73.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132448219.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.721 kcal (2) G-P(sol) polarization free energy of solvation -74.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds