Wall clock time and date at job start Fri Apr 10 2020 18:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46226 * 2 1 4 4 C 1.53038 * 109.46406 * 119.97629 * 2 1 3 5 5 C 1.53190 * 109.31477 * 181.38416 * 4 2 1 6 6 N 1.46930 * 108.77733 * 305.36796 * 5 4 2 7 7 C 1.34777 * 120.62743 * 233.58481 * 6 5 4 8 8 O 1.21283 * 119.99649 * 179.97438 * 7 6 5 9 9 C 1.50702 * 120.00155 * 0.02562 * 7 6 5 10 10 C 1.53003 * 117.49652 * 248.61668 * 9 7 6 11 11 C 1.52998 * 60.00020 * 252.51189 * 10 9 7 12 12 C 1.46918 * 118.73785 * 53.60672 * 6 5 4 13 13 C 1.53048 * 109.45916 * 240.04686 * 2 1 3 14 14 H 1.08997 * 109.49665 * 298.56540 * 13 2 1 15 15 C 1.53003 * 109.49569 * 58.66383 * 13 2 1 16 16 N 1.46904 * 109.46485 * 184.99919 * 15 13 2 17 17 C 1.46898 * 110.99341 * 179.97438 * 16 15 13 18 18 C 1.50699 * 109.47118 * 180.02562 * 17 16 15 19 19 O 1.21299 * 119.99669 * 359.97438 * 18 17 16 20 20 N 1.34771 * 120.00535 * 180.02562 * 18 17 16 21 21 C 1.37104 * 120.00488 * 179.97438 * 20 18 17 22 22 H 1.07995 * 119.99581 * 0.02562 * 21 20 18 23 23 C 1.38948 * 119.99822 * 180.02562 * 21 20 18 24 24 N 1.31407 * 120.00554 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99582 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47478 * 59.99467 * 25 23 21 27 27 H 1.48503 * 109.47182 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.46751 * 299.99683 * 25 23 21 29 29 H 1.09002 * 109.47153 * 300.02071 * 1 2 3 30 30 H 1.09001 * 109.46832 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47261 * 60.02243 * 1 2 3 32 32 H 1.08993 * 109.49916 * 301.34315 * 4 2 1 33 33 H 1.09009 * 109.49372 * 61.40237 * 4 2 1 34 34 H 1.08998 * 109.58733 * 65.15907 * 5 4 2 35 35 H 1.09004 * 109.58945 * 185.43814 * 5 4 2 36 36 H 1.08998 * 115.54969 * 34.33274 * 9 7 6 37 37 H 1.08997 * 117.50037 * 0.02562 * 10 9 7 38 38 H 1.08998 * 117.49178 * 145.01894 * 10 9 7 39 39 H 1.08998 * 117.50225 * 252.51229 * 11 10 9 40 40 H 1.08999 * 117.51936 * 107.48380 * 11 10 9 41 41 H 1.08997 * 109.58735 * 66.18206 * 12 6 5 42 42 H 1.09005 * 109.58467 * 186.46224 * 12 6 5 43 43 H 1.08993 * 109.46790 * 304.99773 * 15 13 2 44 44 H 1.08996 * 109.46992 * 65.00201 * 15 13 2 45 45 H 1.00894 * 111.00198 * 56.04757 * 16 15 13 46 46 H 1.09004 * 109.47468 * 299.99920 * 17 16 15 47 47 H 1.09005 * 109.47563 * 60.00207 * 17 16 15 48 48 H 0.97007 * 119.99809 * 359.97438 * 20 18 17 49 49 H 0.97001 * 120.00256 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7209 1.2499 5 6 3.5714 -0.6888 1.2640 6 7 4.0679 -1.2487 -0.0004 7 6 4.9622 -2.2571 -0.0006 8 8 5.3640 -2.7110 -1.0510 9 6 5.4619 -2.8213 1.3044 10 6 6.9260 -2.5678 1.6691 11 6 6.4761 -3.9649 1.2374 12 6 3.5714 -0.6883 -1.2644 13 6 2.0398 -0.7205 -1.2503 14 1 1.6978 -1.7554 -1.2387 15 6 1.5027 -0.0183 -2.4991 16 7 1.8928 -0.7784 -3.6941 17 6 1.3926 -0.1326 -4.9150 18 6 1.8107 -0.9393 -6.1173 19 8 2.4618 -1.9523 -5.9714 20 7 1.4622 -0.5347 -7.3548 21 6 1.8431 -1.2683 -8.4486 22 1 2.4221 -2.1706 -8.3186 23 6 1.4842 -0.8508 -9.7243 24 7 0.7793 0.2469 -9.8825 25 14 2.0025 -1.8507 -11.2146 26 1 1.4373 -3.2201 -11.1129 27 1 1.4986 -1.1970 -12.4491 28 1 3.4846 -1.9296 -11.2666 29 1 -0.3633 0.5142 0.8898 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5135 -0.8902 32 1 1.6573 -0.2212 2.1397 33 1 1.6974 -1.7557 1.2382 34 1 3.9143 0.3407 1.3674 35 1 3.9418 -1.2828 2.0995 36 1 4.7361 -2.8393 2.1174 37 1 7.5277 -1.9926 0.9654 38 1 7.1637 -2.4187 2.7224 39 1 6.4178 -4.7350 2.0066 40 1 6.7815 -4.3095 0.2494 41 1 3.9143 0.3412 -1.3674 42 1 3.9438 -1.2825 -2.0989 43 1 0.4157 0.0396 -2.4440 44 1 1.9178 0.9879 -2.5569 45 1 1.5746 -1.7341 -3.6346 46 1 0.3047 -0.0758 -4.8766 47 1 1.8065 0.8730 -4.9900 48 1 0.9419 0.2756 -7.4715 49 1 0.5284 0.5381 -10.7731 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132577921.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:26 Heat of formation + Delta-G solvation = -52.960070 kcal Electronic energy + Delta-G solvation = -27557.728944 eV Core-core repulsion = 23713.037924 eV Total energy + Delta-G solvation = -3844.691020 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.57766 -38.74437 -38.07985 -36.24195 -35.55324 -34.07976 -33.67616 -31.56423 -31.10080 -28.71359 -27.48490 -25.48173 -24.44518 -23.58146 -22.82709 -22.65048 -21.77899 -20.25017 -19.11186 -18.95473 -17.83256 -17.66959 -16.32164 -16.07591 -15.65345 -15.29457 -15.05163 -14.84073 -14.68005 -14.36468 -14.25474 -13.98151 -13.70052 -13.44196 -13.38346 -13.09767 -12.84749 -12.57622 -12.42408 -12.05916 -11.96539 -11.86116 -11.81647 -11.49963 -11.44980 -11.20433 -11.02729 -10.92464 -10.83484 -10.74213 -10.62381 -10.43588 -10.39659 -10.16236 -9.78122 -9.44841 -8.73489 -8.38403 -7.97551 -7.90059 -6.36909 -3.77424 2.40708 2.83468 3.24278 3.29083 3.34281 3.60820 3.96904 4.09411 4.23577 4.29795 4.40515 4.51137 4.55494 4.62108 4.69670 4.74946 4.82782 5.00774 5.12233 5.23155 5.25908 5.28586 5.30337 5.32330 5.37642 5.44262 5.48604 5.50283 5.61848 5.66849 5.69893 5.72524 5.77786 5.86829 5.88392 5.89579 6.01166 6.07183 6.21785 6.26564 6.32743 6.45541 7.27065 7.31816 7.59974 7.71234 8.11674 8.14574 8.67021 9.23216 9.59823 10.11983 10.80931 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.015105 B = 0.002498 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.199824 B =11208.028163 C =12797.326664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.087 4.087 3 H 0.073 0.927 4 C -0.130 4.130 5 C 0.107 3.893 6 N -0.610 5.610 7 C 0.540 3.460 8 O -0.530 6.530 9 C -0.196 4.196 10 C -0.153 4.153 11 C -0.149 4.149 12 C 0.122 3.878 13 C -0.091 4.091 14 H 0.074 0.926 15 C 0.063 3.937 16 N -0.668 5.668 17 C 0.052 3.948 18 C 0.441 3.559 19 O -0.580 6.580 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.904 5.904 25 Si 0.930 3.070 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.273 1.273 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.123 0.877 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.109 0.891 41 H 0.064 0.936 42 H 0.110 0.890 43 H 0.035 0.965 44 H 0.071 0.929 45 H 0.349 0.651 46 H 0.042 0.958 47 H 0.085 0.915 48 H 0.392 0.608 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.955 1.994 28.251 28.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.106 4.106 3 H 0.092 0.908 4 C -0.168 4.168 5 C -0.017 4.017 6 N -0.343 5.343 7 C 0.327 3.673 8 O -0.406 6.406 9 C -0.217 4.217 10 C -0.191 4.191 11 C -0.186 4.186 12 C 0.001 3.999 13 C -0.111 4.111 14 H 0.092 0.908 15 C -0.067 4.067 16 N -0.301 5.301 17 C -0.081 4.081 18 C 0.226 3.774 19 O -0.464 6.464 20 N -0.202 5.202 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.545 5.545 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.141 0.859 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.127 0.873 41 H 0.082 0.918 42 H 0.128 0.872 43 H 0.053 0.947 44 H 0.090 0.910 45 H 0.169 0.831 46 H 0.060 0.940 47 H 0.103 0.897 48 H 0.225 0.775 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.168 1.445 27.533 27.753 hybrid contribution -1.296 0.048 -0.720 1.483 sum 1.872 1.494 26.813 26.920 Atomic orbital electron populations 1.21908 0.94949 1.01995 1.01887 1.21131 0.95850 0.99574 0.94053 0.90830 1.21989 0.94944 1.01580 0.98272 1.21756 0.94314 0.99356 0.86233 1.48067 1.43309 1.35384 1.07561 1.19656 0.78720 0.79035 0.89843 1.90762 1.57399 1.59384 1.33064 1.22238 0.94509 1.06792 0.98120 1.22924 0.93556 1.00155 1.02433 1.22965 1.00291 0.91216 1.04152 1.21656 0.92752 0.99317 0.86199 1.21517 0.95537 1.00248 0.93777 0.90768 1.22049 0.97557 0.97884 0.89206 1.60065 1.64058 1.06049 0.99914 1.21657 0.97402 0.98776 0.90262 1.19839 0.85540 0.87908 0.84105 1.90546 1.43002 1.27175 1.85646 1.41857 1.48656 1.25202 1.04520 1.19662 1.31856 1.07506 0.83744 0.87996 1.25248 0.96937 0.96728 0.99066 1.69603 1.38095 1.22732 1.24098 0.85923 0.79073 0.79416 0.79842 1.19937 1.21011 1.19874 0.92765 0.92700 0.92005 0.90671 0.91415 0.91363 0.89721 0.85945 0.88229 0.87912 0.87996 0.87268 0.91766 0.87190 0.94690 0.91012 0.83139 0.94010 0.89665 0.77506 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 8.82 37.16 0.33 -0.79 16 2 C -0.09 -0.69 2.23 -90.58 -0.20 -0.89 16 3 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -0.85 5.36 -26.61 -0.14 -1.00 16 5 C 0.11 0.75 6.34 -3.71 -0.02 0.73 16 6 N -0.61 -6.76 2.97 -172.77 -0.51 -7.27 16 7 C 0.54 7.06 7.48 -10.98 -0.08 6.98 16 8 O -0.53 -9.56 15.67 5.55 0.09 -9.47 16 9 C -0.20 -1.76 5.13 -91.77 -0.47 -2.23 16 10 C -0.15 -1.16 10.23 -26.73 -0.27 -1.43 16 11 C -0.15 -1.29 10.04 -26.73 -0.27 -1.56 16 12 C 0.12 1.56 5.54 -3.71 -0.02 1.54 16 13 C -0.09 -0.99 2.02 -90.49 -0.18 -1.17 16 14 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 15 C 0.06 0.76 4.83 -3.82 -0.02 0.74 16 16 N -0.67 -11.11 5.70 -115.06 -0.66 -11.76 16 17 C 0.05 0.94 6.17 -4.98 -0.03 0.91 16 18 C 0.44 10.78 7.82 -10.99 -0.09 10.69 16 19 O -0.58 -16.45 15.78 5.54 0.09 -16.36 16 20 N -0.57 -14.76 5.29 -10.96 -0.06 -14.81 16 21 C -0.30 -8.56 9.68 -14.93 -0.14 -8.70 16 22 H 0.10 3.08 7.16 -52.49 -0.38 2.70 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -25.08 13.05 55.50 0.72 -24.35 16 25 Si 0.93 21.63 29.55 -169.99 -5.02 16.60 16 26 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 28 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.49 6.29 -51.93 -0.33 0.16 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.45 5.52 -51.93 -0.29 0.16 16 36 H 0.12 0.79 6.57 -51.93 -0.34 0.45 16 37 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.11 1.19 7.67 -51.93 -0.40 0.79 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.11 1.87 6.79 -51.93 -0.35 1.52 16 43 H 0.04 0.39 6.14 -51.93 -0.32 0.07 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.35 6.16 8.43 -39.29 -0.33 5.83 16 46 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 48 H 0.39 9.72 7.90 -40.82 -0.32 9.40 16 49 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 391.29 15.07 5.90 5.90 Total: -1.00 -34.57 391.29 -9.28 -43.84 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -8.11 Total: 13.36 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -1.71 Total: 4.32 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: -0.50 Total: -58.20 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: 0.17 Total: -25.83 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.57 -9.28 -43.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132577921.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.117 kcal (2) G-P(sol) polarization free energy of solvation -34.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds