Wall clock time and date at job start Fri Apr 10 2020 18:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.45831 * 2 1 4 4 C 1.53039 * 109.44854 * 119.96839 * 2 1 3 5 5 C 1.53616 * 109.24424 * 58.52491 * 4 2 1 6 6 N 1.46927 * 108.54513 * 54.85580 * 5 4 2 7 7 C 1.34777 * 120.63056 * 126.36713 * 6 5 4 8 8 O 1.21284 * 119.99666 * 179.71988 * 7 6 5 9 9 C 1.50697 * 120.00030 * 359.71987 * 7 6 5 10 10 C 1.53000 * 117.49504 * 111.38036 * 9 7 6 11 11 C 1.52997 * 60.00347 * 107.48912 * 10 9 7 12 12 C 1.46924 * 118.73615 * 306.09678 * 6 5 4 13 13 C 1.53040 * 109.45929 * 240.02891 * 2 1 3 14 14 H 1.08998 * 109.52592 * 181.38478 * 13 2 1 15 15 C 1.52995 * 109.49848 * 61.30531 * 13 2 1 16 16 N 1.46903 * 109.47527 * 175.15905 * 15 13 2 17 17 C 1.46895 * 111.00402 * 180.02562 * 16 15 13 18 18 C 1.50703 * 109.47187 * 180.02562 * 17 16 15 19 19 O 1.21289 * 119.99902 * 359.97438 * 18 17 16 20 20 N 1.34780 * 120.00003 * 180.02562 * 18 17 16 21 21 C 1.37089 * 119.99849 * 179.97438 * 20 18 17 22 22 H 1.07998 * 120.00074 * 359.97438 * 21 20 18 23 23 C 1.38953 * 120.00161 * 179.97438 * 21 20 18 24 24 N 1.31418 * 119.99444 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00398 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46716 * 59.99991 * 25 23 21 27 27 H 1.48496 * 109.47118 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47169 * 300.00486 * 25 23 21 29 29 H 1.09004 * 109.46828 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46991 * 299.97048 * 1 2 3 31 31 H 1.08998 * 109.47523 * 59.97415 * 1 2 3 32 32 H 1.09001 * 109.49163 * 178.60296 * 4 2 1 33 33 H 1.08998 * 109.49763 * 298.69194 * 4 2 1 34 34 H 1.09004 * 109.74383 * 295.11865 * 5 4 2 35 35 H 1.09002 * 109.66549 * 174.54602 * 5 4 2 36 36 H 1.08990 * 115.56356 * 325.69207 * 9 7 6 37 37 H 1.09002 * 117.49696 * 214.98125 * 10 9 7 38 38 H 1.09002 * 117.50343 * 0.02562 * 10 9 7 39 39 H 1.08999 * 117.49685 * 252.51237 * 11 10 9 40 40 H 1.08997 * 117.50044 * 107.48590 * 11 10 9 41 41 H 1.09005 * 109.58722 * 173.64886 * 12 6 5 42 42 H 1.09003 * 109.58479 * 294.07096 * 12 6 5 43 43 H 1.09000 * 109.47694 * 295.16069 * 15 13 2 44 44 H 1.09007 * 109.47171 * 55.16502 * 15 13 2 45 45 H 1.00895 * 111.00063 * 303.95842 * 16 15 13 46 46 H 1.09004 * 109.46876 * 300.00203 * 17 16 15 47 47 H 1.09000 * 109.47390 * 60.00149 * 17 16 15 48 48 H 0.97003 * 119.99996 * 359.97438 * 20 18 17 49 49 H 0.97004 * 119.99577 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0396 -0.7208 1.2501 5 6 1.4941 -2.1568 1.2643 6 7 1.8620 -2.8089 0.0001 7 6 2.5149 -3.9880 0.0002 8 8 2.8085 -4.5186 -1.0501 9 6 2.8801 -4.6470 1.3053 10 6 2.1532 -5.9430 1.6700 11 6 3.6205 -5.9843 1.2387 12 6 1.4993 -2.1542 -1.2642 13 6 2.0399 -0.7209 -1.2500 14 1 3.1296 -0.7431 -1.2388 15 6 1.5571 0.0193 -2.4990 16 7 2.1411 -0.6041 -3.6941 17 6 1.6991 0.0823 -4.9153 18 6 2.3167 -0.5841 -6.1177 19 8 3.0530 -1.5368 -5.9716 20 7 2.0516 -0.1207 -7.3553 21 6 2.6138 -0.7266 -8.4490 22 1 3.2694 -1.5749 -8.3189 23 6 2.3402 -0.2493 -9.7249 24 7 1.5428 0.7832 -9.8831 25 14 3.1067 -1.0744 -11.2152 26 1 2.6833 -2.4969 -11.2658 27 1 2.6602 -0.3803 -12.4496 28 1 4.5865 -1.0018 -11.1147 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5134 0.8903 31 1 -0.3634 0.5142 -0.8897 32 1 3.1293 -0.7430 1.2384 33 1 1.6956 -0.1934 2.1398 34 1 0.4087 -2.1375 1.3630 35 1 1.9293 -2.7063 2.0990 36 1 3.1382 -3.9688 2.1186 37 1 1.9330 -6.1173 2.7232 38 1 1.4111 -6.3192 0.9657 39 1 3.8435 -6.3873 0.2508 40 1 4.3658 -6.1858 2.0081 41 1 1.9379 -2.7019 -2.0984 42 1 0.4144 -2.1345 -1.3674 43 1 0.4699 -0.0344 -2.5557 44 1 1.8670 1.0630 -2.4454 45 1 3.1481 -0.6248 -3.6357 46 1 0.6128 0.0294 -4.9889 47 1 2.0103 1.1263 -4.8783 48 1 1.4630 0.6414 -7.4721 49 1 1.3514 1.1162 -10.7739 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132577923.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:31 Heat of formation + Delta-G solvation = -75.054132 kcal Electronic energy + Delta-G solvation = -27685.954043 eV Core-core repulsion = 23840.304952 eV Total energy + Delta-G solvation = -3845.649090 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.57396 -40.21846 -39.55593 -37.04275 -36.81576 -35.89882 -34.62181 -33.30931 -32.41815 -29.17726 -28.51189 -27.13091 -26.06692 -24.98955 -24.11959 -23.31622 -22.67210 -21.20823 -20.40175 -19.91289 -19.19480 -18.46926 -17.82195 -17.24484 -16.98657 -16.51761 -16.34910 -16.13312 -16.00190 -15.68404 -15.45264 -15.22562 -15.17316 -14.61690 -14.35588 -14.13807 -14.13224 -13.55697 -13.47294 -13.29644 -13.26486 -12.96845 -12.80706 -12.59943 -12.49690 -12.46150 -12.38300 -12.14011 -12.01341 -11.72770 -11.53883 -11.52633 -11.44423 -11.34198 -11.24537 -10.77146 -10.37655 -10.04378 -9.57641 -9.30582 -8.49130 -5.98043 1.37474 1.38958 1.47579 1.50331 1.99113 2.02715 2.27308 2.90146 2.90510 3.17690 3.46673 3.52424 3.71503 3.80976 3.87238 3.94028 3.97261 4.05956 4.14197 4.27942 4.30613 4.36094 4.46027 4.51646 4.55303 4.57827 4.65300 4.71814 4.72816 4.78040 4.86285 4.93777 4.96623 5.02206 5.05200 5.12140 5.19675 5.21982 5.30513 5.37952 5.39639 5.56149 5.60026 5.87371 6.09859 6.34626 6.44483 6.58052 7.10127 7.19289 7.53286 8.09818 8.68110 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.016028 B = 0.002483 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.492118 B =11272.744883 C =12739.836910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.082 4.082 3 H 0.084 0.916 4 C -0.125 4.125 5 C 0.099 3.901 6 N -0.605 5.605 7 C 0.525 3.475 8 O -0.598 6.598 9 C -0.196 4.196 10 C -0.135 4.135 11 C -0.161 4.161 12 C 0.125 3.875 13 C -0.083 4.083 14 H 0.055 0.945 15 C 0.068 3.932 16 N -0.688 5.688 17 C 0.068 3.932 18 C 0.435 3.565 19 O -0.626 6.626 20 N -0.572 5.572 21 C -0.337 4.337 22 H 0.075 0.925 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.993 3.007 26 H -0.274 1.274 27 H -0.267 1.267 28 H -0.272 1.272 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.158 0.842 37 H 0.141 0.859 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.131 0.869 41 H 0.055 0.945 42 H 0.072 0.928 43 H 0.085 0.915 44 H 0.048 0.952 45 H 0.339 0.661 46 H 0.105 0.895 47 H 0.069 0.931 48 H 0.397 0.603 49 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.178 -0.008 31.189 31.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.101 4.101 3 H 0.102 0.898 4 C -0.163 4.163 5 C -0.022 4.022 6 N -0.336 5.336 7 C 0.315 3.685 8 O -0.480 6.480 9 C -0.217 4.217 10 C -0.173 4.173 11 C -0.198 4.198 12 C 0.003 3.997 13 C -0.103 4.103 14 H 0.074 0.926 15 C -0.061 4.061 16 N -0.320 5.320 17 C -0.065 4.065 18 C 0.222 3.778 19 O -0.513 6.513 20 N -0.210 5.210 21 C -0.466 4.466 22 H 0.093 0.907 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.816 3.184 26 H -0.199 1.199 27 H -0.191 1.191 28 H -0.197 1.197 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.125 0.875 34 H 0.104 0.896 35 H 0.127 0.873 36 H 0.176 0.824 37 H 0.159 0.841 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.149 0.851 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.103 0.897 44 H 0.066 0.934 45 H 0.157 0.843 46 H 0.123 0.877 47 H 0.087 0.913 48 H 0.231 0.769 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.116 -1.270 30.523 30.825 hybrid contribution 0.720 0.779 -1.618 1.935 sum -3.397 -0.490 28.905 29.108 Atomic orbital electron populations 1.21983 0.94096 1.02070 1.02732 1.21104 0.96825 0.99425 0.92724 0.89789 1.22030 1.00783 0.94829 0.98672 1.22247 1.01543 0.93801 0.84655 1.48199 1.56270 1.20654 1.08497 1.20530 0.76503 0.80867 0.90636 1.90730 1.56316 1.65164 1.35748 1.22302 1.09893 0.92849 0.96634 1.23029 0.94821 0.95436 1.03974 1.23014 0.96478 0.96901 1.03397 1.21441 0.99576 0.92977 0.85728 1.21417 0.99643 0.94056 0.95148 0.92647 1.22124 1.00488 0.95784 0.87710 1.60086 1.14745 1.56132 1.01001 1.21519 1.01233 0.95823 0.87905 1.20977 0.85199 0.86354 0.85245 1.90511 1.42528 1.31730 1.86493 1.41912 1.43793 1.30511 1.04744 1.19612 1.27383 1.14099 0.85536 0.90682 1.26040 0.97145 0.96882 1.01109 1.69665 1.36350 1.24773 1.25174 0.84998 0.78464 0.78163 0.76761 1.19902 1.19078 1.19713 0.92782 0.90637 0.92620 0.92113 0.87517 0.89583 0.87321 0.82415 0.84124 0.90107 0.90748 0.85105 0.92678 0.90982 0.89657 0.93367 0.84289 0.87700 0.91335 0.76865 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.11 71.98 0.58 -1.13 16 2 C -0.08 -1.07 2.71 -10.77 -0.03 -1.10 16 3 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 4 C -0.13 -1.21 5.64 30.81 0.17 -1.04 16 5 C 0.10 1.11 5.90 86.51 0.51 1.62 16 6 N -0.60 -13.30 2.97 -818.07 -2.43 -15.73 16 7 C 0.52 14.30 7.48 87.66 0.66 14.96 16 8 O -0.60 -23.79 15.67 -3.04 -0.05 -23.83 16 9 C -0.20 -3.27 5.12 -11.54 -0.06 -3.33 16 10 C -0.14 -1.82 10.23 30.59 0.31 -1.50 16 11 C -0.16 -2.72 10.04 30.60 0.31 -2.42 16 12 C 0.13 3.33 5.07 86.36 0.44 3.77 16 13 C -0.08 -1.78 2.26 -10.72 -0.02 -1.80 16 14 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 15 C 0.07 1.59 4.62 86.30 0.40 1.99 16 16 N -0.69 -23.51 5.69 -517.92 -2.95 -26.46 16 17 C 0.07 2.44 6.17 85.56 0.53 2.97 16 18 C 0.43 22.02 7.82 87.66 0.69 22.70 16 19 O -0.63 -37.50 15.78 -3.06 -0.05 -37.55 16 20 N -0.57 -30.75 5.29 -306.99 -1.62 -32.37 16 21 C -0.34 -20.00 9.68 84.04 0.81 -19.19 16 22 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 23 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 24 N -0.92 -50.76 13.05 21.66 0.28 -50.48 16 25 Si 0.99 44.51 29.55 68.60 2.03 46.54 16 26 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 27 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 28 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 29 H 0.05 0.69 4.96 -2.39 -0.01 0.68 16 30 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.05 0.70 6.57 -2.39 -0.02 0.68 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.09 0.78 6.69 -2.39 -0.02 0.77 16 35 H 0.11 0.71 5.51 -2.39 -0.01 0.69 16 36 H 0.16 1.45 6.58 -2.39 -0.02 1.44 16 37 H 0.14 0.85 8.14 -2.39 -0.02 0.84 16 38 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.07 1.79 7.67 -2.39 -0.02 1.78 16 40 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.05 2.08 6.79 -2.38 -0.02 2.07 16 42 H 0.07 1.79 6.69 -2.39 -0.02 1.77 16 43 H 0.09 1.85 6.72 -2.39 -0.02 1.83 16 44 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 45 H 0.34 12.64 8.43 -89.70 -0.76 11.89 16 46 H 0.10 3.40 8.14 -2.38 -0.02 3.38 16 47 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 48 H 0.40 20.04 7.90 -92.71 -0.73 19.31 16 49 H 0.28 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -81.95 385.21 0.47 -81.48 By element: Atomic # 1 Polarization: 42.60 SS G_CDS: -0.51 Total: 42.09 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: 5.76 Total: 16.31 kcal Atomic # 7 Polarization: -118.33 SS G_CDS: -6.71 Total: -125.04 kcal Atomic # 8 Polarization: -61.29 SS G_CDS: -0.10 Total: -61.38 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -81.95 0.47 -81.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132577923.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.427 kcal (2) G-P(sol) polarization free energy of solvation -81.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds