Wall clock time and date at job start Fri Apr 10 2020 18:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.45724 * 2 1 4 4 C 1.53039 * 109.46386 * 119.97213 * 2 1 3 5 5 C 1.53190 * 109.30959 * 58.64277 * 4 2 1 6 6 N 1.46924 * 108.77480 * 54.63559 * 5 4 2 7 7 C 1.34788 * 120.62935 * 126.36843 * 6 5 4 8 8 O 1.21281 * 119.99692 * 180.02562 * 7 6 5 9 9 C 1.50697 * 119.99772 * 359.97438 * 7 6 5 10 10 N 1.46504 * 109.46736 * 180.02562 * 9 7 6 11 11 C 1.46825 * 124.33333 * 269.98326 * 10 9 7 12 12 C 1.54481 * 105.44388 * 197.00180 * 11 10 9 13 13 C 1.54625 * 101.79703 * 334.62720 * 12 11 10 14 14 C 1.34414 * 124.34881 * 90.02427 * 10 9 7 15 15 O 1.21283 * 124.94790 * 359.55020 * 14 10 9 16 16 C 1.46919 * 118.74225 * 306.63928 * 6 5 4 17 17 C 1.52761 * 109.00589 * 53.31009 * 16 6 5 18 18 H 1.09008 * 109.36082 * 65.50277 * 17 16 6 19 19 C 1.53006 * 109.56647 * 185.55220 * 17 16 6 20 20 N 1.46494 * 109.47193 * 294.96621 * 19 17 16 21 21 C 1.36935 * 120.00135 * 179.97438 * 20 19 17 22 22 H 1.08008 * 119.99822 * 0.02562 * 21 20 19 23 23 C 1.38812 * 120.00032 * 180.02562 * 21 20 19 24 24 N 1.31612 * 120.00193 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99905 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47160 * 89.99806 * 25 23 21 27 27 H 1.48495 * 109.47146 * 209.99962 * 25 23 21 28 28 H 1.48506 * 109.47100 * 329.99760 * 25 23 21 29 29 H 1.09004 * 109.46914 * 300.02188 * 1 2 3 30 30 H 1.08998 * 109.47599 * 60.02829 * 1 2 3 31 31 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.49845 * 298.69180 * 4 2 1 33 33 H 1.08997 * 109.49740 * 178.59543 * 4 2 1 34 34 H 1.08992 * 109.58669 * 294.84686 * 5 4 2 35 35 H 1.09003 * 109.58312 * 174.41902 * 5 4 2 36 36 H 1.09000 * 109.47421 * 59.99989 * 9 7 6 37 37 H 1.09004 * 109.47308 * 299.99741 * 9 7 6 38 38 H 1.08998 * 110.23857 * 78.01832 * 11 10 9 39 39 H 1.09000 * 110.28306 * 316.00091 * 11 10 9 40 40 H 1.09002 * 110.96936 * 216.49131 * 12 11 10 41 41 H 1.09003 * 110.97019 * 92.76754 * 12 11 10 42 42 H 1.09010 * 110.48568 * 143.45878 * 13 12 11 43 43 H 1.09003 * 110.49084 * 265.96626 * 13 12 11 44 44 H 1.09001 * 109.59023 * 173.14188 * 16 6 5 45 45 H 1.08995 * 109.58663 * 293.57547 * 16 6 5 46 46 H 1.09001 * 109.46869 * 54.96803 * 19 17 16 47 47 H 1.09002 * 109.47041 * 174.96762 * 19 17 16 48 48 H 0.97000 * 119.99947 * 359.97438 * 20 19 17 49 49 H 0.97000 * 120.00137 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7209 1.2500 5 6 1.4994 -2.1541 1.2641 6 7 1.8621 -2.8088 -0.0002 7 6 2.5158 -3.9875 -0.0004 8 8 2.8100 -4.5176 -1.0508 9 6 2.8821 -4.6461 1.3046 10 7 3.5811 -5.9054 1.0367 11 6 2.9162 -7.2058 0.8862 12 6 4.0320 -8.2605 1.0565 13 6 5.2885 -7.4615 0.6398 14 6 4.9133 -6.0188 0.8979 15 8 5.7000 -5.0985 0.9686 16 6 1.5040 -2.1513 -1.2644 17 6 2.0395 -0.7207 -1.2502 18 1 3.1293 -0.7429 -1.2386 19 6 1.5565 0.0196 -2.4991 20 7 2.1417 -0.5996 -3.6908 21 6 1.8502 -0.1035 -4.9334 22 1 1.1892 0.7446 -5.0348 23 6 2.4043 -0.6906 -6.0626 24 7 3.2103 -1.7237 -5.9390 25 14 2.0073 -0.0133 -7.7576 26 1 2.9992 1.0313 -8.1182 27 1 2.0611 -1.1123 -8.7549 28 1 0.6457 0.5794 -7.7474 29 1 -0.3633 0.5142 0.8898 30 1 -0.3634 0.5134 -0.8902 31 1 -0.3633 -1.0276 0.0005 32 1 1.6960 -0.1936 2.1397 33 1 3.1296 -0.7430 1.2380 34 1 0.4145 -2.1345 1.3674 35 1 1.9381 -2.7019 2.0982 36 1 1.9766 -4.8473 1.8769 37 1 3.5332 -3.9840 1.8756 38 1 2.4676 -7.2876 -0.1038 39 1 2.1562 -7.3330 1.6571 40 1 3.8712 -9.1092 0.3916 41 1 4.1041 -8.5882 2.0936 42 1 6.1436 -7.7487 1.2520 43 1 5.5072 -7.6178 -0.4165 44 1 1.9457 -2.6971 -2.0981 45 1 0.4195 -2.1314 -1.3715 46 1 0.4695 -0.0365 -2.5570 47 1 1.8640 1.0639 -2.4441 48 1 2.7357 -1.3610 -3.5996 49 1 3.5972 -2.1342 -6.7281 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132617756.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:44 Heat of formation + Delta-G solvation = -54.756702 kcal Electronic energy + Delta-G solvation = -28667.983303 eV Core-core repulsion = 24823.214375 eV Total energy + Delta-G solvation = -3844.768928 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.80047 -39.93516 -37.95146 -36.42088 -34.93318 -33.53766 -33.00424 -31.82868 -29.88975 -28.28037 -27.73162 -27.30766 -25.23085 -24.53020 -23.12174 -22.14908 -21.18139 -20.47713 -19.18546 -18.18213 -17.51116 -16.96038 -16.84512 -16.50174 -15.71206 -15.47696 -15.04198 -14.93099 -14.83035 -14.29298 -13.86733 -13.77295 -13.67015 -13.48469 -13.33217 -13.03716 -12.92453 -12.79859 -12.68574 -12.43727 -12.13979 -11.92060 -11.69985 -11.62297 -11.26260 -11.21609 -11.04527 -10.88293 -10.76173 -10.59854 -10.26917 -10.14255 -10.00349 -9.90304 -9.83237 -9.55732 -8.80951 -8.77250 -8.42211 -6.83905 -5.66932 -2.96858 2.43127 2.70560 2.72002 3.23275 3.48716 3.52934 3.55473 4.16786 4.23445 4.45032 4.57513 4.63098 4.69017 4.78472 4.85782 4.88899 4.94460 5.07090 5.19188 5.21587 5.27327 5.31421 5.38916 5.45048 5.57296 5.58139 5.64289 5.69154 5.70744 5.75585 5.83317 5.92174 5.97946 6.04223 6.19436 6.22007 6.35344 6.37405 6.39971 6.61462 6.69649 6.82322 6.93594 6.93895 7.51133 7.76461 8.06552 8.30970 8.50507 9.61328 10.19977 10.53983 11.55322 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.011377 B = 0.003563 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.424794 B = 7857.661378 C = 9686.252128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.084 4.084 3 H 0.073 0.927 4 C -0.130 4.130 5 C 0.105 3.895 6 N -0.610 5.610 7 C 0.491 3.509 8 O -0.520 6.520 9 C 0.111 3.889 10 N -0.605 5.605 11 C 0.103 3.897 12 C -0.130 4.130 13 C -0.153 4.153 14 C 0.522 3.478 15 O -0.528 6.528 16 C 0.121 3.879 17 C -0.103 4.103 18 H 0.073 0.927 19 C 0.161 3.839 20 N -0.733 5.733 21 C -0.242 4.242 22 H 0.069 0.931 23 C -0.013 4.013 24 N -0.929 5.929 25 Si 0.906 3.094 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.101 0.899 43 H 0.107 0.893 44 H 0.101 0.899 45 H 0.067 0.933 46 H 0.022 0.978 47 H 0.020 0.980 48 H 0.385 0.615 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.576 -9.795 23.333 25.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.104 4.104 3 H 0.092 0.908 4 C -0.168 4.168 5 C -0.018 4.018 6 N -0.345 5.345 7 C 0.276 3.724 8 O -0.394 6.394 9 C -0.016 4.016 10 N -0.339 5.339 11 C -0.020 4.020 12 C -0.167 4.167 13 C -0.193 4.193 14 C 0.310 3.690 15 O -0.404 6.404 16 C 0.000 4.000 17 C -0.123 4.123 18 H 0.091 0.909 19 C 0.033 3.967 20 N -0.378 5.378 21 C -0.373 4.373 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.577 5.577 25 Si 0.737 3.263 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.124 0.876 37 H 0.128 0.872 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.100 0.900 42 H 0.119 0.881 43 H 0.126 0.874 44 H 0.119 0.881 45 H 0.085 0.915 46 H 0.040 0.960 47 H 0.038 0.962 48 H 0.219 0.781 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.101 -9.466 22.675 24.911 hybrid contribution -0.098 0.291 -1.009 1.055 sum -4.199 -9.175 21.666 23.900 Atomic orbital electron populations 1.21982 0.95233 1.01917 1.01788 1.21065 0.95969 0.99422 0.93900 0.90815 1.21949 1.01346 0.95014 0.98539 1.21774 1.00389 0.93970 0.85643 1.48195 1.57608 1.20887 1.07779 1.21111 0.77972 0.81380 0.91888 1.90769 1.52403 1.63217 1.33039 1.21229 0.98894 0.86124 0.95314 1.47822 1.07246 1.07292 1.71569 1.22143 0.95733 0.81432 1.02679 1.22575 0.93550 0.97678 1.02933 1.22310 0.99589 0.92568 1.04862 1.20904 0.81828 0.91341 0.74897 1.90741 1.53971 1.45104 1.50590 1.21631 0.99787 0.92950 0.85661 1.21616 1.00974 0.94483 0.95194 0.90881 1.20671 0.95896 0.94714 0.85382 1.42431 1.56813 1.37734 1.00823 1.19198 1.23308 1.10999 0.83802 0.91262 1.24757 1.00044 0.98306 0.97800 1.69679 1.35364 1.24203 1.28485 0.86214 0.77729 0.77764 0.84612 1.21779 1.21802 1.20807 0.93153 0.91789 0.92482 0.90796 0.91384 0.90902 0.90478 0.87609 0.87228 0.90462 0.90379 0.89019 0.90013 0.88093 0.87434 0.88076 0.91455 0.95982 0.96213 0.78115 0.93502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.11 37.16 0.30 -1.39 16 2 C -0.08 -1.05 2.71 -90.58 -0.25 -1.30 16 3 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 4 C -0.13 -1.31 5.63 -26.61 -0.15 -1.46 16 5 C 0.11 1.00 5.88 -3.71 -0.02 0.98 16 6 N -0.61 -8.58 2.98 -173.04 -0.52 -9.10 16 7 C 0.49 7.67 7.77 -10.98 -0.09 7.58 16 8 O -0.52 -10.82 15.84 5.56 0.09 -10.73 16 9 C 0.11 1.22 4.76 -5.19 -0.02 1.20 16 10 N -0.61 -7.13 2.42 -173.73 -0.42 -7.55 16 11 C 0.10 0.84 7.35 -3.09 -0.02 0.81 16 12 C -0.13 -0.79 7.18 -25.10 -0.18 -0.97 16 13 C -0.15 -1.41 6.86 -26.74 -0.18 -1.60 16 14 C 0.52 7.30 8.02 -10.86 -0.09 7.22 16 15 O -0.53 -9.77 17.59 5.55 0.10 -9.68 16 16 C 0.12 2.09 5.03 -3.94 -0.02 2.07 16 17 C -0.10 -1.74 2.14 -90.72 -0.19 -1.94 16 18 H 0.07 1.40 8.14 -51.92 -0.42 0.98 16 19 C 0.16 3.32 5.19 -4.04 -0.02 3.30 16 20 N -0.73 -19.48 5.38 -59.91 -0.32 -19.80 16 21 C -0.24 -7.03 9.99 -15.06 -0.15 -7.19 16 22 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 23 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 24 N -0.93 -29.65 13.06 55.49 0.72 -28.92 16 25 Si 0.91 23.21 29.55 -169.99 -5.02 18.18 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 28 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.80 6.57 -51.93 -0.34 0.45 16 31 H 0.06 0.63 4.99 -51.93 -0.26 0.37 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.60 6.69 -51.93 -0.35 0.25 16 35 H 0.08 0.53 5.93 -51.93 -0.31 0.23 16 36 H 0.11 0.74 7.94 -51.93 -0.41 0.32 16 37 H 0.11 1.17 7.48 -51.93 -0.39 0.79 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 43 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.10 2.23 6.20 -51.93 -0.32 1.91 16 45 H 0.07 1.11 6.70 -51.93 -0.35 0.76 16 46 H 0.02 0.45 6.73 -51.93 -0.35 0.10 16 47 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.38 11.04 6.89 -40.82 -0.28 10.76 16 49 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 LS Contribution 380.22 15.07 5.73 5.73 Total: -1.00 -38.74 380.22 -8.80 -47.54 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -7.98 Total: 7.49 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: -1.18 Total: 6.84 kcal Atomic # 7 Polarization: -64.84 SS G_CDS: -0.53 Total: -65.37 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: 0.19 Total: -20.41 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.02 Total: 18.18 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.74 -8.80 -47.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132617756.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.216 kcal (2) G-P(sol) polarization free energy of solvation -38.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds