Wall clock time and date at job start Fri Apr 10 2020 18:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.45724 * 2 1 4 4 C 1.53039 * 109.46386 * 119.97213 * 2 1 3 5 5 C 1.53190 * 109.30959 * 58.64277 * 4 2 1 6 6 N 1.46924 * 108.77480 * 54.63559 * 5 4 2 7 7 C 1.34788 * 120.62935 * 126.36843 * 6 5 4 8 8 O 1.21281 * 119.99692 * 180.02562 * 7 6 5 9 9 C 1.50697 * 119.99772 * 359.97438 * 7 6 5 10 10 N 1.46504 * 109.46736 * 180.02562 * 9 7 6 11 11 C 1.46825 * 124.33333 * 269.98326 * 10 9 7 12 12 C 1.54481 * 105.44388 * 197.00180 * 11 10 9 13 13 C 1.54625 * 101.79703 * 334.62720 * 12 11 10 14 14 C 1.34414 * 124.34881 * 90.02427 * 10 9 7 15 15 O 1.21283 * 124.94790 * 359.55020 * 14 10 9 16 16 C 1.46919 * 118.74225 * 306.63928 * 6 5 4 17 17 C 1.52761 * 109.00589 * 53.31009 * 16 6 5 18 18 H 1.09008 * 109.36082 * 65.50277 * 17 16 6 19 19 C 1.53006 * 109.56647 * 185.55220 * 17 16 6 20 20 N 1.46494 * 109.47193 * 294.96621 * 19 17 16 21 21 C 1.36935 * 120.00135 * 179.97438 * 20 19 17 22 22 H 1.08008 * 119.99822 * 0.02562 * 21 20 19 23 23 C 1.38812 * 120.00032 * 180.02562 * 21 20 19 24 24 N 1.31612 * 120.00193 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99905 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47160 * 89.99806 * 25 23 21 27 27 H 1.48495 * 109.47146 * 209.99962 * 25 23 21 28 28 H 1.48506 * 109.47100 * 329.99760 * 25 23 21 29 29 H 1.09004 * 109.46914 * 300.02188 * 1 2 3 30 30 H 1.08998 * 109.47599 * 60.02829 * 1 2 3 31 31 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.49845 * 298.69180 * 4 2 1 33 33 H 1.08997 * 109.49740 * 178.59543 * 4 2 1 34 34 H 1.08992 * 109.58669 * 294.84686 * 5 4 2 35 35 H 1.09003 * 109.58312 * 174.41902 * 5 4 2 36 36 H 1.09000 * 109.47421 * 59.99989 * 9 7 6 37 37 H 1.09004 * 109.47308 * 299.99741 * 9 7 6 38 38 H 1.08998 * 110.23857 * 78.01832 * 11 10 9 39 39 H 1.09000 * 110.28306 * 316.00091 * 11 10 9 40 40 H 1.09002 * 110.96936 * 216.49131 * 12 11 10 41 41 H 1.09003 * 110.97019 * 92.76754 * 12 11 10 42 42 H 1.09010 * 110.48568 * 143.45878 * 13 12 11 43 43 H 1.09003 * 110.49084 * 265.96626 * 13 12 11 44 44 H 1.09001 * 109.59023 * 173.14188 * 16 6 5 45 45 H 1.08995 * 109.58663 * 293.57547 * 16 6 5 46 46 H 1.09001 * 109.46869 * 54.96803 * 19 17 16 47 47 H 1.09002 * 109.47041 * 174.96762 * 19 17 16 48 48 H 0.97000 * 119.99947 * 359.97438 * 20 19 17 49 49 H 0.97000 * 120.00137 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7209 1.2500 5 6 1.4994 -2.1541 1.2641 6 7 1.8621 -2.8088 -0.0002 7 6 2.5158 -3.9875 -0.0004 8 8 2.8100 -4.5176 -1.0508 9 6 2.8821 -4.6461 1.3046 10 7 3.5811 -5.9054 1.0367 11 6 2.9162 -7.2058 0.8862 12 6 4.0320 -8.2605 1.0565 13 6 5.2885 -7.4615 0.6398 14 6 4.9133 -6.0188 0.8979 15 8 5.7000 -5.0985 0.9686 16 6 1.5040 -2.1513 -1.2644 17 6 2.0395 -0.7207 -1.2502 18 1 3.1293 -0.7429 -1.2386 19 6 1.5565 0.0196 -2.4991 20 7 2.1417 -0.5996 -3.6908 21 6 1.8502 -0.1035 -4.9334 22 1 1.1892 0.7446 -5.0348 23 6 2.4043 -0.6906 -6.0626 24 7 3.2103 -1.7237 -5.9390 25 14 2.0073 -0.0133 -7.7576 26 1 2.9992 1.0313 -8.1182 27 1 2.0611 -1.1123 -8.7549 28 1 0.6457 0.5794 -7.7474 29 1 -0.3633 0.5142 0.8898 30 1 -0.3634 0.5134 -0.8902 31 1 -0.3633 -1.0276 0.0005 32 1 1.6960 -0.1936 2.1397 33 1 3.1296 -0.7430 1.2380 34 1 0.4145 -2.1345 1.3674 35 1 1.9381 -2.7019 2.0982 36 1 1.9766 -4.8473 1.8769 37 1 3.5332 -3.9840 1.8756 38 1 2.4676 -7.2876 -0.1038 39 1 2.1562 -7.3330 1.6571 40 1 3.8712 -9.1092 0.3916 41 1 4.1041 -8.5882 2.0936 42 1 6.1436 -7.7487 1.2520 43 1 5.5072 -7.6178 -0.4165 44 1 1.9457 -2.6971 -2.0981 45 1 0.4195 -2.1314 -1.3715 46 1 0.4695 -0.0365 -2.5570 47 1 1.8640 1.0639 -2.4441 48 1 2.7357 -1.3610 -3.5996 49 1 3.5972 -2.1342 -6.7281 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132617756.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:43 Heat of formation + Delta-G solvation = -83.291466 kcal Electronic energy + Delta-G solvation = -28669.220663 eV Core-core repulsion = 24823.214375 eV Total energy + Delta-G solvation = -3846.006288 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.84893 -41.00453 -39.23224 -37.44359 -36.67652 -34.98321 -33.83997 -33.50894 -31.58148 -29.23814 -28.53383 -28.49037 -26.82280 -25.59263 -24.92757 -22.80684 -22.60868 -21.62233 -20.30157 -19.47065 -18.95139 -18.49105 -17.87864 -17.39198 -16.87404 -16.76948 -16.54770 -16.10838 -15.95930 -15.71344 -15.36480 -15.02888 -14.71655 -14.65788 -14.57347 -14.38180 -14.18186 -13.86864 -13.73117 -13.46307 -13.11033 -13.07269 -12.93757 -12.88209 -12.64679 -12.45432 -12.29037 -12.17842 -12.04185 -11.93713 -11.90100 -11.74788 -11.41616 -11.25982 -11.06556 -10.96879 -10.95161 -9.76891 -9.61286 -9.05308 -7.97881 -5.29346 1.37003 1.41850 1.45683 1.53363 1.54200 1.82376 2.19594 2.52376 3.34848 3.40578 3.44920 3.62490 3.68938 3.78607 3.83216 4.04338 4.07000 4.11039 4.16292 4.17521 4.26706 4.28950 4.37610 4.51403 4.54615 4.63094 4.69302 4.70296 4.75894 4.81213 4.83807 4.89518 4.97588 5.07894 5.08046 5.17082 5.22204 5.22907 5.28811 5.38149 5.40876 5.44726 5.52592 5.60593 6.02875 6.21969 6.38446 7.03847 7.14449 7.26864 8.03089 8.25757 9.25809 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.011377 B = 0.003563 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.424794 B = 7857.661378 C = 9686.252128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 H 0.076 0.924 4 C -0.126 4.126 5 C 0.097 3.903 6 N -0.606 5.606 7 C 0.479 3.521 8 O -0.588 6.588 9 C 0.114 3.886 10 N -0.606 5.606 11 C 0.095 3.905 12 C -0.113 4.113 13 C -0.153 4.153 14 C 0.502 3.498 15 O -0.589 6.589 16 C 0.132 3.868 17 C -0.092 4.092 18 H 0.038 0.962 19 C 0.160 3.840 20 N -0.750 5.750 21 C -0.247 4.247 22 H 0.081 0.919 23 C -0.081 4.081 24 N -0.974 5.974 25 Si 0.980 3.020 26 H -0.286 1.286 27 H -0.296 1.296 28 H -0.263 1.263 29 H 0.083 0.917 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.116 0.884 33 H 0.050 0.950 34 H 0.101 0.899 35 H 0.113 0.887 36 H 0.161 0.839 37 H 0.116 0.884 38 H 0.056 0.944 39 H 0.117 0.883 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.117 0.883 43 H 0.099 0.901 44 H 0.040 0.960 45 H 0.077 0.923 46 H 0.034 0.966 47 H 0.022 0.978 48 H 0.368 0.632 49 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.093 -9.812 26.656 29.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.099 4.099 3 H 0.094 0.906 4 C -0.164 4.164 5 C -0.023 4.023 6 N -0.339 5.339 7 C 0.267 3.733 8 O -0.468 6.468 9 C -0.012 4.012 10 N -0.338 5.338 11 C -0.027 4.027 12 C -0.150 4.150 13 C -0.193 4.193 14 C 0.292 3.708 15 O -0.470 6.470 16 C 0.008 3.992 17 C -0.111 4.111 18 H 0.057 0.943 19 C 0.034 3.966 20 N -0.392 5.392 21 C -0.379 4.379 22 H 0.099 0.901 23 C -0.273 4.273 24 N -0.625 5.625 25 Si 0.808 3.192 26 H -0.213 1.213 27 H -0.223 1.223 28 H -0.188 1.188 29 H 0.102 0.898 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.134 0.866 33 H 0.069 0.931 34 H 0.119 0.881 35 H 0.132 0.868 36 H 0.178 0.822 37 H 0.134 0.866 38 H 0.075 0.925 39 H 0.135 0.865 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.135 0.865 43 H 0.117 0.883 44 H 0.059 0.941 45 H 0.095 0.905 46 H 0.052 0.948 47 H 0.039 0.961 48 H 0.199 0.801 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.701 -9.448 26.073 28.530 hybrid contribution 0.639 0.356 -2.005 2.134 sum -6.063 -9.093 24.068 26.433 Atomic orbital electron populations 1.21944 0.93490 1.02330 1.02622 1.21067 0.97285 0.99113 0.92413 0.90576 1.21964 1.00398 0.95445 0.98573 1.22239 1.02397 0.93639 0.84067 1.48306 1.56766 1.20511 1.08299 1.22131 0.76871 0.81425 0.92864 1.90742 1.55108 1.65131 1.35791 1.21457 1.01085 0.85934 0.92717 1.48110 1.06972 1.08782 1.69975 1.22448 0.97067 0.80204 1.02951 1.22630 0.90397 0.96999 1.05023 1.22382 1.02038 0.90153 1.04726 1.21825 0.82408 0.92666 0.73939 1.90688 1.55650 1.47275 1.53401 1.21220 0.99581 0.92454 0.85902 1.21477 0.98800 0.94696 0.96170 0.94321 1.20871 0.96078 0.94688 0.84980 1.42715 1.56840 1.37483 1.02183 1.19697 1.22508 1.10734 0.84943 0.90126 1.25714 1.00458 0.98917 1.02183 1.69891 1.37249 1.26172 1.29209 0.85050 0.78303 0.76815 0.79046 1.21272 1.22270 1.18778 0.89785 0.93514 0.92233 0.86584 0.93071 0.88143 0.86848 0.82179 0.86636 0.92533 0.86463 0.87146 0.87186 0.86454 0.88322 0.94086 0.90492 0.94823 0.96056 0.80101 0.94139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.11 71.98 0.58 -2.22 16 2 C -0.08 -1.85 2.71 -10.77 -0.03 -1.88 16 3 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 4 C -0.13 -2.13 5.63 30.67 0.17 -1.96 16 5 C 0.10 1.51 5.88 86.36 0.51 2.01 16 6 N -0.61 -16.92 2.98 -819.76 -2.44 -19.37 16 7 C 0.48 15.33 7.77 87.65 0.68 16.01 16 8 O -0.59 -26.50 15.84 -3.03 -0.05 -26.54 16 9 C 0.11 2.32 4.76 85.63 0.41 2.73 16 10 N -0.61 -13.81 2.42 -822.15 -1.99 -15.80 16 11 C 0.09 1.34 7.35 86.82 0.64 1.98 16 12 C -0.11 -1.08 7.18 31.65 0.23 -0.86 16 13 C -0.15 -2.77 6.86 30.59 0.21 -2.56 16 14 C 0.50 14.41 8.02 87.90 0.71 15.11 16 15 O -0.59 -23.12 17.59 -3.04 -0.05 -23.17 16 16 C 0.13 4.78 5.03 86.22 0.43 5.21 16 17 C -0.09 -3.23 2.14 -10.86 -0.02 -3.25 16 18 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 19 C 0.16 6.82 5.19 86.38 0.45 7.27 16 20 N -0.75 -42.00 5.38 -343.45 -1.85 -43.84 16 21 C -0.25 -14.79 9.99 84.03 0.84 -13.95 16 22 H 0.08 4.53 7.83 -2.91 -0.02 4.51 16 23 C -0.08 -5.00 5.50 84.86 0.47 -4.53 16 24 N -0.97 -65.34 13.06 21.65 0.28 -65.06 16 25 Si 0.98 48.88 29.55 68.60 2.03 50.90 16 26 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 27 H -0.30 -14.86 7.11 99.48 0.71 -14.16 16 28 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 29 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.05 1.06 6.57 -2.39 -0.02 1.04 16 31 H 0.06 1.11 4.99 -2.39 -0.01 1.10 16 32 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.10 1.11 6.69 -2.39 -0.02 1.09 16 35 H 0.11 1.00 5.93 -2.39 -0.01 0.99 16 36 H 0.16 1.47 7.94 -2.39 -0.02 1.45 16 37 H 0.12 2.27 7.48 -2.38 -0.02 2.25 16 38 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.12 1.69 8.14 -2.38 -0.02 1.67 16 43 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.04 1.99 6.20 -2.39 -0.01 1.98 16 45 H 0.08 2.59 6.70 -2.39 -0.02 2.57 16 46 H 0.03 1.38 6.73 -2.39 -0.02 1.36 16 47 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.37 22.85 6.89 -92.71 -0.64 22.22 16 49 H 0.25 16.20 8.31 -92.71 -0.77 15.43 16 Total: -1.00 -95.16 380.22 2.51 -92.65 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: 0.31 Total: 31.12 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: 6.27 Total: 19.11 kcal Atomic # 7 Polarization: -138.07 SS G_CDS: -6.00 Total: -144.07 kcal Atomic # 8 Polarization: -49.61 SS G_CDS: -0.10 Total: -49.72 kcal Atomic # 14 Polarization: 48.88 SS G_CDS: 2.03 Total: 50.90 kcal Total: -95.16 2.51 -92.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132617756.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.361 kcal (2) G-P(sol) polarization free energy of solvation -95.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds